Experiment: diet=StandardDiet; sample=FecalPellet; mouse5; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12285 and BBR_RS12290 are separated by 73 nucleotides BBR_RS12290 and BBR_RS12295 are separated by 22 nucleotides BBR_RS12295 and BBR_RS12300 are separated by 23 nucleotides BBR_RS12300 and BBR_RS12305 are separated by 219 nucleotides
BBR_RS12285: BBR_RS12285 - nucleoside hydrolase, at 507,942 to 508,997
_RS12285
BBR_RS12290: BBR_RS12290 - ribosome maturation factor RimM, at 509,071 to 509,685
_RS12290
BBR_RS12295: BBR_RS12295 - RNA-binding protein, at 509,708 to 509,941
_RS12295
BBR_RS12300: BBR_RS12300 - 30S ribosomal protein S16, at 509,965 to 510,438
_RS12300
BBR_RS12305: BBR_RS12305 - endonuclease/exonuclease/phosphatase family protein, at 510,658 to 511,989
_RS12305
Position (kb) 509
510 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 508.825 kb on - strand, within BBR_RS12285 at 508.896 kb on + strand at 508.915 kb on - strand at 508.924 kb on - strand at 508.933 kb on + strand at 508.941 kb on - strand at 508.993 kb on + strand at 509.004 kb on + strand at 509.005 kb on + strand at 509.043 kb on + strand at 509.043 kb on + strand at 509.062 kb on + strand at 509.063 kb on + strand at 509.070 kb on - strand at 509.084 kb on - strand at 509.090 kb on - strand at 509.641 kb on - strand at 509.641 kb on - strand at 509.641 kb on - strand at 509.679 kb on - strand at 509.689 kb on - strand at 509.689 kb on - strand at 509.707 kb on - strand at 509.729 kb on - strand at 509.787 kb on - strand, within BBR_RS12295 at 509.936 kb on - strand at 509.940 kb on - strand at 509.952 kb on - strand at 509.982 kb on - strand at 510.049 kb on - strand, within BBR_RS12300 at 510.049 kb on - strand, within BBR_RS12300 at 510.061 kb on - strand, within BBR_RS12300 at 510.154 kb on - strand, within BBR_RS12300 at 510.185 kb on - strand, within BBR_RS12300 at 510.567 kb on + strand at 510.580 kb on + strand at 510.580 kb on + strand at 510.588 kb on - strand at 510.588 kb on - strand at 510.588 kb on - strand at 510.593 kb on - strand at 510.593 kb on - strand at 510.602 kb on + strand at 510.603 kb on - strand at 510.612 kb on - strand at 510.645 kb on + strand at 510.692 kb on - strand at 510.698 kb on - strand at 510.716 kb on + strand at 510.724 kb on - strand at 510.812 kb on - strand, within BBR_RS12305 at 510.813 kb on - strand, within BBR_RS12305 at 510.858 kb on + strand, within BBR_RS12305
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse5; day3 remove 508,825 - BBR_RS12285 0.84 -1.3 508,896 + +0.6 508,915 - +0.1 508,924 - +1.8 508,933 + -0.3 508,941 - +1.4 508,993 + -2.1 509,004 + -0.0 509,005 + -1.4 509,043 + +1.3 509,043 + +0.6 509,062 + +2.0 509,063 + +0.3 509,070 - +1.3 509,084 - +0.0 509,090 - -0.7 509,641 - +0.4 509,641 - -2.3 509,641 - +1.1 509,679 - +1.4 509,689 - -1.9 509,689 - -2.6 509,707 - -1.8 509,729 - -0.3 509,787 - BBR_RS12295 0.34 -2.1 509,936 - -2.1 509,940 - +0.3 509,952 - -1.2 509,982 - -1.0 510,049 - BBR_RS12300 0.18 +2.2 510,049 - BBR_RS12300 0.18 -2.3 510,061 - BBR_RS12300 0.20 -1.9 510,154 - BBR_RS12300 0.40 -0.0 510,185 - BBR_RS12300 0.46 -2.2 510,567 + -1.9 510,580 + -0.4 510,580 + -1.4 510,588 - -1.4 510,588 - +2.5 510,588 - +2.4 510,593 - -2.9 510,593 - -1.1 510,602 + +2.2 510,603 - -3.0 510,612 - +0.4 510,645 + -0.5 510,692 - -1.3 510,698 - -1.7 510,716 + -2.9 510,724 - +0.8 510,812 - BBR_RS12305 0.12 -0.9 510,813 - BBR_RS12305 0.12 -0.5 510,858 + BBR_RS12305 0.15 -1.4
Or see this region's nucleotide sequence