Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS11645

Experiment: diet=StandardDiet; sample=FecalPellet; mouse5; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS11630 and BBR_RS11635 are separated by 165 nucleotidesBBR_RS11635 and BBR_RS11640 are separated by 15 nucleotidesBBR_RS11640 and BBR_RS11645 are separated by 46 nucleotidesBBR_RS11645 and BBR_RS11650 are separated by 33 nucleotides BBR_RS11630: BBR_RS11630 - MFS transporter, at 365,435 to 366,640 _RS11630 BBR_RS11635: BBR_RS11635 - hypothetical protein, at 366,806 to 367,117 _RS11635 BBR_RS11640: BBR_RS11640 - hypothetical protein, at 367,133 to 367,498 _RS11640 BBR_RS11645: BBR_RS11645 - integrase, at 367,545 to 367,706 _RS11645 BBR_RS11650: BBR_RS11650 - integrase, at 367,740 to 368,417 _RS11650 Position (kb) 367 368Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 366.553 kb on + strandat 366.575 kb on + strandat 366.609 kb on - strandat 366.656 kb on + strandat 366.662 kb on - strandat 366.665 kb on + strandat 366.672 kb on - strandat 366.682 kb on - strandat 366.686 kb on + strandat 366.689 kb on + strandat 366.707 kb on - strandat 366.717 kb on + strandat 366.733 kb on + strandat 366.743 kb on - strandat 366.751 kb on + strandat 366.751 kb on + strandat 366.864 kb on + strand, within BBR_RS11635at 366.872 kb on - strand, within BBR_RS11635at 366.891 kb on - strand, within BBR_RS11635at 366.897 kb on - strand, within BBR_RS11635at 366.916 kb on - strand, within BBR_RS11635at 366.919 kb on + strand, within BBR_RS11635at 366.928 kb on + strand, within BBR_RS11635at 366.942 kb on - strand, within BBR_RS11635at 366.958 kb on + strand, within BBR_RS11635at 366.963 kb on + strand, within BBR_RS11635at 366.963 kb on + strand, within BBR_RS11635at 366.965 kb on + strand, within BBR_RS11635at 366.966 kb on - strand, within BBR_RS11635at 366.990 kb on - strand, within BBR_RS11635at 366.997 kb on - strand, within BBR_RS11635at 367.009 kb on - strand, within BBR_RS11635at 367.027 kb on + strand, within BBR_RS11635at 367.035 kb on + strand, within BBR_RS11635at 367.035 kb on + strand, within BBR_RS11635at 367.043 kb on - strand, within BBR_RS11635at 367.044 kb on + strand, within BBR_RS11635at 367.056 kb on - strand, within BBR_RS11635at 367.064 kb on + strand, within BBR_RS11635at 367.296 kb on - strand, within BBR_RS11640at 367.353 kb on + strand, within BBR_RS11640at 367.431 kb on + strand, within BBR_RS11640at 367.444 kb on + strand, within BBR_RS11640at 367.476 kb on - strandat 367.493 kb on + strandat 367.515 kb on - strandat 367.515 kb on - strandat 367.546 kb on - strandat 367.546 kb on - strandat 367.556 kb on - strandat 367.556 kb on - strandat 367.569 kb on + strand, within BBR_RS11645at 367.574 kb on + strand, within BBR_RS11645at 367.574 kb on + strand, within BBR_RS11645at 367.578 kb on + strand, within BBR_RS11645at 367.582 kb on - strand, within BBR_RS11645at 367.584 kb on - strand, within BBR_RS11645at 367.601 kb on + strand, within BBR_RS11645at 367.621 kb on - strand, within BBR_RS11645at 367.628 kb on - strand, within BBR_RS11645at 367.647 kb on + strand, within BBR_RS11645at 367.654 kb on + strand, within BBR_RS11645at 367.672 kb on + strand, within BBR_RS11645at 367.695 kb on + strandat 367.702 kb on - strandat 367.704 kb on + strandat 367.716 kb on - strandat 367.755 kb on - strandat 367.770 kb on + strandat 367.773 kb on - strandat 367.778 kb on - strandat 367.780 kb on + strandat 367.788 kb on - strandat 367.800 kb on - strandat 367.836 kb on + strand, within BBR_RS11650at 367.836 kb on + strand, within BBR_RS11650at 367.836 kb on - strand, within BBR_RS11650at 367.849 kb on + strand, within BBR_RS11650at 367.888 kb on + strand, within BBR_RS11650at 367.888 kb on + strand, within BBR_RS11650at 367.896 kb on - strand, within BBR_RS11650at 367.946 kb on + strand, within BBR_RS11650at 367.946 kb on + strand, within BBR_RS11650at 367.946 kb on + strand, within BBR_RS11650at 367.980 kb on + strand, within BBR_RS11650at 367.981 kb on - strand, within BBR_RS11650at 367.986 kb on - strand, within BBR_RS11650at 367.988 kb on - strand, within BBR_RS11650at 368.011 kb on - strand, within BBR_RS11650at 368.018 kb on - strand, within BBR_RS11650at 368.020 kb on + strand, within BBR_RS11650at 368.035 kb on + strand, within BBR_RS11650at 368.046 kb on + strand, within BBR_RS11650at 368.046 kb on + strand, within BBR_RS11650at 368.061 kb on + strand, within BBR_RS11650at 368.061 kb on + strand, within BBR_RS11650at 368.061 kb on + strand, within BBR_RS11650at 368.065 kb on + strand, within BBR_RS11650at 368.086 kb on + strand, within BBR_RS11650at 368.122 kb on + strand, within BBR_RS11650at 368.130 kb on - strand, within BBR_RS11650at 368.130 kb on - strand, within BBR_RS11650at 368.150 kb on + strand, within BBR_RS11650at 368.184 kb on + strand, within BBR_RS11650at 368.188 kb on - strand, within BBR_RS11650at 368.215 kb on + strand, within BBR_RS11650at 368.229 kb on + strand, within BBR_RS11650at 368.229 kb on + strand, within BBR_RS11650at 368.237 kb on - strand, within BBR_RS11650at 368.245 kb on + strand, within BBR_RS11650at 368.264 kb on + strand, within BBR_RS11650at 368.269 kb on + strand, within BBR_RS11650at 368.269 kb on + strand, within BBR_RS11650at 368.269 kb on + strand, within BBR_RS11650at 368.269 kb on + strand, within BBR_RS11650at 368.269 kb on + strand, within BBR_RS11650at 368.269 kb on + strand, within BBR_RS11650at 368.269 kb on + strand, within BBR_RS11650at 368.272 kb on - strand, within BBR_RS11650at 368.288 kb on + strand, within BBR_RS11650at 368.288 kb on + strand, within BBR_RS11650at 368.298 kb on + strand, within BBR_RS11650at 368.303 kb on + strand, within BBR_RS11650at 368.306 kb on - strand, within BBR_RS11650at 368.324 kb on + strand, within BBR_RS11650at 368.326 kb on + strand, within BBR_RS11650at 368.326 kb on + strand, within BBR_RS11650at 368.345 kb on - strand, within BBR_RS11650at 368.346 kb on + strand, within BBR_RS11650at 368.361 kb on + strandat 368.361 kb on + strandat 368.361 kb on + strandat 368.377 kb on - strandat 368.380 kb on + strandat 368.382 kb on + strandat 368.384 kb on - strandat 368.406 kb on + strandat 368.437 kb on + strandat 368.445 kb on - strandat 368.455 kb on + strandat 368.455 kb on + strandat 368.471 kb on + strandat 368.479 kb on - strandat 368.479 kb on - strandat 368.479 kb on - strandat 368.528 kb on + strandat 368.533 kb on + strandat 368.533 kb on + strandat 368.536 kb on - strandat 368.536 kb on - strandat 368.541 kb on - strandat 368.570 kb on + strandat 368.578 kb on + strandat 368.586 kb on - strandat 368.586 kb on - strandat 368.618 kb on + strandat 368.635 kb on + strandat 368.684 kb on + strandat 368.690 kb on + strandat 368.690 kb on + strandat 368.690 kb on + strandat 368.698 kb on - strandat 368.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse5; day3
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366,553 + -1.5
366,575 + +2.2
366,609 - +0.9
366,656 + +1.1
366,662 - +1.1
366,665 + +2.1
366,672 - -1.5
366,682 - +0.8
366,686 + +0.3
366,689 + +0.6
366,707 - -0.9
366,717 + -1.9
366,733 + -1.9
366,743 - +1.0
366,751 + -0.4
366,751 + -3.2
366,864 + BBR_RS11635 0.19 -2.4
366,872 - BBR_RS11635 0.21 +0.7
366,891 - BBR_RS11635 0.27 +2.0
366,897 - BBR_RS11635 0.29 -0.1
366,916 - BBR_RS11635 0.35 +0.2
366,919 + BBR_RS11635 0.36 +0.8
366,928 + BBR_RS11635 0.39 +0.1
366,942 - BBR_RS11635 0.44 +1.8
366,958 + BBR_RS11635 0.49 +2.5
366,963 + BBR_RS11635 0.50 +2.4
366,963 + BBR_RS11635 0.50 -2.0
366,965 + BBR_RS11635 0.51 -2.1
366,966 - BBR_RS11635 0.51 +2.2
366,990 - BBR_RS11635 0.59 -0.4
366,997 - BBR_RS11635 0.61 -2.5
367,009 - BBR_RS11635 0.65 -0.5
367,027 + BBR_RS11635 0.71 +1.7
367,035 + BBR_RS11635 0.73 +1.5
367,035 + BBR_RS11635 0.73 -0.9
367,043 - BBR_RS11635 0.76 -0.5
367,044 + BBR_RS11635 0.76 -2.9
367,056 - BBR_RS11635 0.80 +2.8
367,064 + BBR_RS11635 0.83 +0.8
367,296 - BBR_RS11640 0.45 -2.1
367,353 + BBR_RS11640 0.60 +0.8
367,431 + BBR_RS11640 0.81 +0.8
367,444 + BBR_RS11640 0.85 +1.2
367,476 - -2.9
367,493 + +1.3
367,515 - -2.3
367,515 - -0.2
367,546 - -3.1
367,546 - -1.8
367,556 - -2.2
367,556 - -0.5
367,569 + BBR_RS11645 0.15 +1.1
367,574 + BBR_RS11645 0.18 +0.8
367,574 + BBR_RS11645 0.18 -1.4
367,578 + BBR_RS11645 0.20 -2.2
367,582 - BBR_RS11645 0.23 -2.9
367,584 - BBR_RS11645 0.24 -2.4
367,601 + BBR_RS11645 0.35 -2.5
367,621 - BBR_RS11645 0.47 +1.2
367,628 - BBR_RS11645 0.51 -2.7
367,647 + BBR_RS11645 0.63 -1.1
367,654 + BBR_RS11645 0.67 -0.5
367,672 + BBR_RS11645 0.78 -2.0
367,695 + +1.9
367,702 - +1.0
367,704 + +0.5
367,716 - +1.4
367,755 - +1.3
367,770 + -1.0
367,773 - +0.6
367,778 - +1.6
367,780 + +0.3
367,788 - +0.9
367,800 - +0.0
367,836 + BBR_RS11650 0.14 -1.2
367,836 + BBR_RS11650 0.14 +1.5
367,836 - BBR_RS11650 0.14 +1.2
367,849 + BBR_RS11650 0.16 -0.2
367,888 + BBR_RS11650 0.22 +0.2
367,888 + BBR_RS11650 0.22 -2.0
367,896 - BBR_RS11650 0.23 -4.4
367,946 + BBR_RS11650 0.30 +1.9
367,946 + BBR_RS11650 0.30 +0.1
367,946 + BBR_RS11650 0.30 +2.0
367,980 + BBR_RS11650 0.35 +2.6
367,981 - BBR_RS11650 0.36 +2.1
367,986 - BBR_RS11650 0.36 +1.1
367,988 - BBR_RS11650 0.37 -2.5
368,011 - BBR_RS11650 0.40 +1.9
368,018 - BBR_RS11650 0.41 +1.3
368,020 + BBR_RS11650 0.41 -1.9
368,035 + BBR_RS11650 0.44 -2.2
368,046 + BBR_RS11650 0.45 +0.1
368,046 + BBR_RS11650 0.45 +0.4
368,061 + BBR_RS11650 0.47 -2.4
368,061 + BBR_RS11650 0.47 +1.5
368,061 + BBR_RS11650 0.47 -0.8
368,065 + BBR_RS11650 0.48 +1.5
368,086 + BBR_RS11650 0.51 +0.8
368,122 + BBR_RS11650 0.56 +1.6
368,130 - BBR_RS11650 0.58 -2.4
368,130 - BBR_RS11650 0.58 -2.9
368,150 + BBR_RS11650 0.60 -0.0
368,184 + BBR_RS11650 0.65 -1.8
368,188 - BBR_RS11650 0.66 -2.7
368,215 + BBR_RS11650 0.70 -2.9
368,229 + BBR_RS11650 0.72 +3.8
368,229 + BBR_RS11650 0.72 -0.2
368,237 - BBR_RS11650 0.73 -2.4
368,245 + BBR_RS11650 0.74 -0.9
368,264 + BBR_RS11650 0.77 -2.0
368,269 + BBR_RS11650 0.78 +1.9
368,269 + BBR_RS11650 0.78 -2.0
368,269 + BBR_RS11650 0.78 -2.1
368,269 + BBR_RS11650 0.78 +2.7
368,269 + BBR_RS11650 0.78 +2.0
368,269 + BBR_RS11650 0.78 -1.8
368,269 + BBR_RS11650 0.78 -2.6
368,272 - BBR_RS11650 0.78 -3.6
368,288 + BBR_RS11650 0.81 +2.5
368,288 + BBR_RS11650 0.81 +1.2
368,298 + BBR_RS11650 0.82 -2.3
368,303 + BBR_RS11650 0.83 -2.8
368,306 - BBR_RS11650 0.83 -2.9
368,324 + BBR_RS11650 0.86 -1.5
368,326 + BBR_RS11650 0.86 +1.0
368,326 + BBR_RS11650 0.86 +1.2
368,345 - BBR_RS11650 0.89 -0.9
368,346 + BBR_RS11650 0.89 +1.2
368,361 + -0.4
368,361 + -2.6
368,361 + +2.5
368,377 - -2.3
368,380 + -0.0
368,382 + -2.2
368,384 - +2.8
368,406 + +1.7
368,437 + +1.9
368,445 - -0.6
368,455 + +0.1
368,455 + +1.6
368,471 + +2.5
368,479 - -1.0
368,479 - +1.6
368,479 - -1.3
368,528 + -0.5
368,533 + -1.9
368,533 + +1.4
368,536 - +1.5
368,536 - -1.8
368,541 - -2.9
368,570 + +0.1
368,578 + +1.4
368,586 - -0.9
368,586 - -3.0
368,618 + +2.0
368,635 + -2.7
368,684 + +3.1
368,690 + +0.9
368,690 + -0.2
368,690 + +1.4
368,698 - +2.9
368,698 - +1.1

Or see this region's nucleotide sequence