Experiment: BHIS with Doxycycline hyclate 0.000390625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0768 and BT0769 are separated by 280 nucleotides BT0769 and BT0770 are separated by 39 nucleotides BT0770 and BT0771 are separated by 18 nucleotides
BT0768: BT0768 - putative para-aminobenzoate synthase component I (NCBI ptt file), at 958,413 to 959,009
BT0768
BT0769: BT0769 - conserved hypothetical protein (NCBI ptt file), at 959,290 to 959,961
BT0769
BT0770: BT0770 - conserved hypothetical protein (NCBI ptt file), at 960,001 to 960,447
BT0770
BT0771: BT0771 - 1,4-alpha-glucan branching enzyme (isoamylase or pullulanase type II) (NCBI ptt file), at 960,466 to 962,478
BT0771
Position (kb) 960
961 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 959.137 kb on + strand at 959.381 kb on - strand, within BT0769 at 959.387 kb on + strand, within BT0769 at 959.530 kb on + strand, within BT0769 at 959.532 kb on + strand, within BT0769 at 959.593 kb on + strand, within BT0769 at 959.593 kb on + strand, within BT0769 at 959.701 kb on + strand, within BT0769 at 959.703 kb on + strand, within BT0769 at 959.977 kb on + strand at 960.291 kb on + strand, within BT0770 at 960.445 kb on + strand at 960.678 kb on + strand, within BT0771 at 960.691 kb on - strand, within BT0771 at 960.951 kb on + strand, within BT0771 at 960.952 kb on - strand, within BT0771 at 960.952 kb on - strand, within BT0771 at 961.077 kb on + strand, within BT0771 at 961.084 kb on - strand, within BT0771 at 961.114 kb on + strand, within BT0771 at 961.407 kb on + strand, within BT0771
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Doxycycline hyclate 0.000390625 mM remove 959,137 + +0.2 959,381 - BT0769 0.14 -3.0 959,387 + BT0769 0.14 -0.8 959,530 + BT0769 0.36 +0.0 959,532 + BT0769 0.36 +0.0 959,593 + BT0769 0.45 +0.0 959,593 + BT0769 0.45 -1.1 959,701 + BT0769 0.61 -0.6 959,703 + BT0769 0.61 -1.0 959,977 + -1.0 960,291 + BT0770 0.65 -2.4 960,445 + -2.6 960,678 + BT0771 0.11 -1.0 960,691 - BT0771 0.11 -1.6 960,951 + BT0771 0.24 -4.9 960,952 - BT0771 0.24 -1.6 960,952 - BT0771 0.24 -2.6 961,077 + BT0771 0.30 -3.8 961,084 - BT0771 0.31 +0.0 961,114 + BT0771 0.32 -2.0 961,407 + BT0771 0.47 -2.8
Or see this region's nucleotide sequence