Experiment: BHIS with Doxycycline hyclate 0.000390625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0593 and BT0594 are separated by 227 nucleotides BT0594 and BT0595 are separated by 87 nucleotides BT0595 and BT0596 are separated by 349 nucleotides BT0596 and BT0597 are separated by 7 nucleotides
BT0593: BT0593 - conserved hypothetical protein (NCBI ptt file), at 733,790 to 734,155
BT0593
BT0594: BT0594 - hypothetical protein (NCBI ptt file), at 734,383 to 734,781
BT0594
BT0595: BT0595 - integrase (NCBI ptt file), at 734,869 to 735,825
BT0595
BT0596: BT0596 - putative transcriptional regulator (NCBI ptt file), at 736,175 to 736,753
BT0596
BT0597: BT0597 - conserved hypothetical protein (NCBI ptt file), at 736,761 to 737,114
BT0597
Position (kb) 734
735
736 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 733.897 kb on - strand, within BT0593 at 733.897 kb on - strand, within BT0593 at 733.954 kb on + strand, within BT0593 at 734.002 kb on - strand, within BT0593 at 734.075 kb on - strand, within BT0593 at 734.156 kb on + strand at 734.157 kb on - strand at 734.222 kb on + strand at 734.400 kb on - strand at 734.508 kb on + strand, within BT0594 at 734.613 kb on - strand, within BT0594 at 734.845 kb on + strand at 734.852 kb on - strand at 735.000 kb on + strand, within BT0595 at 735.049 kb on + strand, within BT0595 at 735.100 kb on + strand, within BT0595 at 735.108 kb on + strand, within BT0595 at 735.120 kb on + strand, within BT0595 at 735.126 kb on + strand, within BT0595 at 735.161 kb on + strand, within BT0595 at 735.184 kb on + strand, within BT0595 at 735.184 kb on + strand, within BT0595 at 735.187 kb on - strand, within BT0595 at 735.367 kb on - strand, within BT0595 at 735.432 kb on + strand, within BT0595 at 735.433 kb on - strand, within BT0595 at 735.542 kb on - strand, within BT0595 at 735.712 kb on - strand, within BT0595 at 735.717 kb on + strand, within BT0595 at 735.954 kb on - strand at 736.081 kb on + strand at 736.256 kb on + strand, within BT0596 at 736.654 kb on - strand, within BT0596
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Doxycycline hyclate 0.000390625 mM remove 733,897 - BT0593 0.29 -3.8 733,897 - BT0593 0.29 -1.6 733,954 + BT0593 0.45 +0.6 734,002 - BT0593 0.58 -0.0 734,075 - BT0593 0.78 -1.0 734,156 + +0.6 734,157 - -0.0 734,222 + -0.0 734,400 - +0.2 734,508 + BT0594 0.31 -0.0 734,613 - BT0594 0.58 +1.1 734,845 + -3.8 734,852 - -0.6 735,000 + BT0595 0.14 -4.1 735,049 + BT0595 0.19 -3.8 735,100 + BT0595 0.24 -0.0 735,108 + BT0595 0.25 -1.6 735,120 + BT0595 0.26 -3.9 735,126 + BT0595 0.27 -1.0 735,161 + BT0595 0.31 -2.3 735,184 + BT0595 0.33 -2.3 735,184 + BT0595 0.33 -0.0 735,187 - BT0595 0.33 +1.0 735,367 - BT0595 0.52 +1.1 735,432 + BT0595 0.59 -4.0 735,433 - BT0595 0.59 -0.0 735,542 - BT0595 0.70 -2.0 735,712 - BT0595 0.88 -0.0 735,717 + BT0595 0.89 -0.5 735,954 - -0.8 736,081 + -1.0 736,256 + BT0596 0.14 -1.0 736,654 - BT0596 0.83 -0.0
Or see this region's nucleotide sequence