Experiment: BHIS with Doxycycline hyclate 0.000390625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0318 and BT0319 are separated by 8 nucleotides BT0319 and BT0320 are separated by 146 nucleotides BT0320 and BT0321 are separated by 37 nucleotides BT0321 and BT0322 are separated by 121 nucleotides
BT0318: BT0318 - hypothetical protein (NCBI ptt file), at 385,353 to 386,567
BT0318
BT0319: BT0319 - hypothetical protein (NCBI ptt file), at 386,576 to 386,947
BT0319
BT0320: BT0320 - hypothetical protein (NCBI ptt file), at 387,094 to 387,897
BT0320
BT0321: BT0321 - cytidine/deoxycytidylate deaminase (NCBI ptt file), at 387,935 to 388,405
BT0321
BT0322: BT0322 - putative oxidoreductase (NCBI ptt file), at 388,527 to 389,501
BT0322
Position (kb) 387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 386.106 kb on - strand, within BT0318 at 386.123 kb on + strand, within BT0318 at 386.123 kb on + strand, within BT0318 at 386.186 kb on + strand, within BT0318 at 386.219 kb on - strand, within BT0318 at 386.343 kb on - strand, within BT0318 at 386.343 kb on - strand, within BT0318 at 386.388 kb on - strand, within BT0318 at 386.401 kb on - strand, within BT0318 at 386.424 kb on + strand, within BT0318 at 386.449 kb on - strand at 386.472 kb on - strand at 386.497 kb on + strand at 386.617 kb on + strand, within BT0319 at 386.703 kb on - strand, within BT0319 at 386.713 kb on + strand, within BT0319 at 386.880 kb on - strand, within BT0319 at 386.959 kb on - strand at 387.054 kb on - strand at 387.061 kb on + strand at 387.238 kb on + strand, within BT0320 at 387.436 kb on + strand, within BT0320 at 387.437 kb on - strand, within BT0320 at 387.672 kb on + strand, within BT0320 at 387.673 kb on - strand, within BT0320 at 387.673 kb on - strand, within BT0320 at 387.907 kb on + strand at 387.907 kb on + strand at 387.908 kb on - strand at 387.944 kb on + strand at 387.945 kb on - strand at 388.004 kb on + strand, within BT0321 at 388.111 kb on - strand, within BT0321 at 388.135 kb on - strand, within BT0321 at 388.186 kb on - strand, within BT0321 at 388.229 kb on + strand, within BT0321 at 388.238 kb on - strand, within BT0321 at 388.291 kb on + strand, within BT0321 at 388.405 kb on + strand at 388.477 kb on + strand at 388.478 kb on - strand at 388.524 kb on - strand at 388.529 kb on - strand at 388.620 kb on + strand at 388.740 kb on - strand, within BT0322 at 388.746 kb on - strand, within BT0322
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Doxycycline hyclate 0.000390625 mM remove 386,106 - BT0318 0.62 -3.4 386,123 + BT0318 0.63 +0.4 386,123 + BT0318 0.63 -0.0 386,186 + BT0318 0.69 +1.7 386,219 - BT0318 0.71 -0.0 386,343 - BT0318 0.81 -0.0 386,343 - BT0318 0.81 -2.4 386,388 - BT0318 0.85 -0.0 386,401 - BT0318 0.86 -3.2 386,424 + BT0318 0.88 -0.0 386,449 - -1.0 386,472 - +0.2 386,497 + +1.3 386,617 + BT0319 0.11 +1.7 386,703 - BT0319 0.34 -1.0 386,713 + BT0319 0.37 -0.2 386,880 - BT0319 0.82 -1.3 386,959 - -0.6 387,054 - -0.6 387,061 + -0.8 387,238 + BT0320 0.18 +1.3 387,436 + BT0320 0.43 -0.0 387,437 - BT0320 0.43 -0.0 387,672 + BT0320 0.72 +0.5 387,673 - BT0320 0.72 +1.0 387,673 - BT0320 0.72 -0.5 387,907 + +1.6 387,907 + -1.5 387,908 - +1.1 387,944 + -0.4 387,945 - -0.0 388,004 + BT0321 0.15 -1.0 388,111 - BT0321 0.37 -3.6 388,135 - BT0321 0.42 -1.6 388,186 - BT0321 0.53 -1.0 388,229 + BT0321 0.62 -2.4 388,238 - BT0321 0.64 -0.4 388,291 + BT0321 0.76 -0.0 388,405 + +0.9 388,477 + +0.2 388,478 - -1.3 388,524 - +0.9 388,529 - -2.6 388,620 + -1.0 388,740 - BT0322 0.22 +1.5 388,746 - BT0322 0.22 -0.0
Or see this region's nucleotide sequence