Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0433 and tRNA-Arg are separated by 70 nucleotides tRNA-Arg and Synpcc7942_0434 are separated by 72 nucleotides
Synpcc7942_0433: Synpcc7942_0433 - hypothetical protein, at 423,632 to 424,840
_0433
Synpcc7942_R0031: tRNA-Arg - tRNA-Arg, at 424,911 to 424,984
tRNA-Arg
Synpcc7942_0434: Synpcc7942_0434 - hypothetical protein, at 425,057 to 426,064
_0434
Position (kb) 424
425 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 423.911 kb on - strand, within Synpcc7942_0433 at 423.913 kb on + strand, within Synpcc7942_0433 at 423.913 kb on + strand, within Synpcc7942_0433 at 423.925 kb on + strand, within Synpcc7942_0433 at 423.941 kb on - strand, within Synpcc7942_0433 at 423.951 kb on + strand, within Synpcc7942_0433 at 423.958 kb on + strand, within Synpcc7942_0433 at 423.958 kb on + strand, within Synpcc7942_0433 at 423.961 kb on - strand, within Synpcc7942_0433 at 423.963 kb on + strand, within Synpcc7942_0433 at 423.966 kb on - strand, within Synpcc7942_0433 at 423.986 kb on - strand, within Synpcc7942_0433 at 423.986 kb on - strand, within Synpcc7942_0433 at 423.986 kb on - strand, within Synpcc7942_0433 at 423.986 kb on - strand, within Synpcc7942_0433 at 423.990 kb on - strand, within Synpcc7942_0433 at 423.999 kb on - strand, within Synpcc7942_0433 at 423.999 kb on - strand, within Synpcc7942_0433 at 424.011 kb on + strand, within Synpcc7942_0433 at 424.013 kb on + strand, within Synpcc7942_0433 at 424.016 kb on - strand, within Synpcc7942_0433 at 424.023 kb on + strand, within Synpcc7942_0433 at 424.049 kb on - strand, within Synpcc7942_0433 at 424.061 kb on + strand, within Synpcc7942_0433 at 424.068 kb on - strand, within Synpcc7942_0433 at 424.069 kb on - strand, within Synpcc7942_0433 at 424.084 kb on + strand, within Synpcc7942_0433 at 424.127 kb on + strand, within Synpcc7942_0433 at 424.135 kb on - strand, within Synpcc7942_0433 at 424.137 kb on + strand, within Synpcc7942_0433 at 424.198 kb on + strand, within Synpcc7942_0433 at 424.198 kb on + strand, within Synpcc7942_0433 at 424.206 kb on - strand, within Synpcc7942_0433 at 424.214 kb on - strand, within Synpcc7942_0433 at 424.220 kb on + strand, within Synpcc7942_0433 at 424.228 kb on - strand, within Synpcc7942_0433 at 424.228 kb on - strand, within Synpcc7942_0433 at 424.296 kb on - strand, within Synpcc7942_0433 at 424.366 kb on + strand, within Synpcc7942_0433 at 424.376 kb on - strand, within Synpcc7942_0433 at 424.384 kb on + strand, within Synpcc7942_0433 at 424.387 kb on - strand, within Synpcc7942_0433 at 424.453 kb on - strand, within Synpcc7942_0433 at 424.511 kb on + strand, within Synpcc7942_0433 at 424.567 kb on + strand, within Synpcc7942_0433 at 424.575 kb on - strand, within Synpcc7942_0433 at 424.595 kb on + strand, within Synpcc7942_0433 at 424.625 kb on - strand, within Synpcc7942_0433 at 424.644 kb on + strand, within Synpcc7942_0433 at 424.657 kb on - strand, within Synpcc7942_0433 at 424.783 kb on + strand at 424.786 kb on - strand at 424.806 kb on - strand at 424.835 kb on + strand at 424.847 kb on - strand at 424.863 kb on + strand at 424.871 kb on - strand at 424.937 kb on + strand, within tRNA-Arg at 424.937 kb on + strand, within tRNA-Arg at 424.937 kb on + strand, within tRNA-Arg at 424.937 kb on + strand, within tRNA-Arg at 424.945 kb on - strand, within tRNA-Arg at 424.962 kb on - strand, within tRNA-Arg at 425.002 kb on - strand at 425.002 kb on - strand at 425.012 kb on - strand at 425.049 kb on + strand at 425.071 kb on - strand at 425.076 kb on + strand at 425.076 kb on + strand at 425.076 kb on + strand at 425.076 kb on + strand at 425.084 kb on - strand at 425.086 kb on + strand at 425.086 kb on + strand at 425.094 kb on - strand at 425.094 kb on - strand at 425.094 kb on - strand at 425.226 kb on + strand, within Synpcc7942_0434 at 425.263 kb on - strand, within Synpcc7942_0434 at 425.334 kb on + strand, within Synpcc7942_0434 at 425.339 kb on - strand, within Synpcc7942_0434 at 425.440 kb on + strand, within Synpcc7942_0434 at 425.646 kb on + strand, within Synpcc7942_0434 at 425.661 kb on - strand, within Synpcc7942_0434 at 425.675 kb on + strand, within Synpcc7942_0434 at 425.680 kb on + strand, within Synpcc7942_0434 at 425.680 kb on + strand, within Synpcc7942_0434 at 425.683 kb on - strand, within Synpcc7942_0434 at 425.683 kb on - strand, within Synpcc7942_0434 at 425.688 kb on - strand, within Synpcc7942_0434 at 425.688 kb on - strand, within Synpcc7942_0434 at 425.696 kb on + strand, within Synpcc7942_0434 at 425.733 kb on + strand, within Synpcc7942_0434 at 425.749 kb on + strand, within Synpcc7942_0434 at 425.757 kb on + strand, within Synpcc7942_0434 at 425.757 kb on + strand, within Synpcc7942_0434 at 425.757 kb on - strand, within Synpcc7942_0434 at 425.758 kb on - strand, within Synpcc7942_0434 at 425.758 kb on - strand, within Synpcc7942_0434 at 425.765 kb on - strand, within Synpcc7942_0434 at 425.772 kb on + strand, within Synpcc7942_0434 at 425.772 kb on + strand, within Synpcc7942_0434 at 425.772 kb on + strand, within Synpcc7942_0434 at 425.772 kb on + strand, within Synpcc7942_0434 at 425.780 kb on - strand, within Synpcc7942_0434 at 425.780 kb on - strand, within Synpcc7942_0434 at 425.780 kb on - strand, within Synpcc7942_0434 at 425.785 kb on - strand, within Synpcc7942_0434 at 425.795 kb on + strand, within Synpcc7942_0434 at 425.798 kb on - strand, within Synpcc7942_0434 at 425.798 kb on - strand, within Synpcc7942_0434 at 425.814 kb on + strand, within Synpcc7942_0434 at 425.840 kb on + strand, within Synpcc7942_0434 at 425.843 kb on - strand, within Synpcc7942_0434 at 425.917 kb on - strand, within Synpcc7942_0434 at 425.960 kb on - strand, within Synpcc7942_0434
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 423,911 - Synpcc7942_0433 0.23 -2.0 423,913 + Synpcc7942_0433 0.23 -1.6 423,913 + Synpcc7942_0433 0.23 -1.9 423,925 + Synpcc7942_0433 0.24 -0.4 423,941 - Synpcc7942_0433 0.26 +0.7 423,951 + Synpcc7942_0433 0.26 -0.7 423,958 + Synpcc7942_0433 0.27 +1.0 423,958 + Synpcc7942_0433 0.27 +0.2 423,961 - Synpcc7942_0433 0.27 -0.3 423,963 + Synpcc7942_0433 0.27 -2.9 423,966 - Synpcc7942_0433 0.28 -1.0 423,986 - Synpcc7942_0433 0.29 +0.4 423,986 - Synpcc7942_0433 0.29 -1.0 423,986 - Synpcc7942_0433 0.29 -0.4 423,986 - Synpcc7942_0433 0.29 -0.3 423,990 - Synpcc7942_0433 0.30 +0.1 423,999 - Synpcc7942_0433 0.30 -2.4 423,999 - Synpcc7942_0433 0.30 -0.6 424,011 + Synpcc7942_0433 0.31 +0.2 424,013 + Synpcc7942_0433 0.32 -2.0 424,016 - Synpcc7942_0433 0.32 -1.7 424,023 + Synpcc7942_0433 0.32 +0.3 424,049 - Synpcc7942_0433 0.34 -0.5 424,061 + Synpcc7942_0433 0.35 -3.5 424,068 - Synpcc7942_0433 0.36 -2.1 424,069 - Synpcc7942_0433 0.36 +0.7 424,084 + Synpcc7942_0433 0.37 +0.4 424,127 + Synpcc7942_0433 0.41 +1.0 424,135 - Synpcc7942_0433 0.42 +1.0 424,137 + Synpcc7942_0433 0.42 -2.0 424,198 + Synpcc7942_0433 0.47 +3.1 424,198 + Synpcc7942_0433 0.47 +0.6 424,206 - Synpcc7942_0433 0.47 -2.0 424,214 - Synpcc7942_0433 0.48 -1.2 424,220 + Synpcc7942_0433 0.49 +1.6 424,228 - Synpcc7942_0433 0.49 +2.7 424,228 - Synpcc7942_0433 0.49 +0.1 424,296 - Synpcc7942_0433 0.55 -0.7 424,366 + Synpcc7942_0433 0.61 +2.4 424,376 - Synpcc7942_0433 0.62 +1.0 424,384 + Synpcc7942_0433 0.62 -3.0 424,387 - Synpcc7942_0433 0.62 -0.3 424,453 - Synpcc7942_0433 0.68 +1.0 424,511 + Synpcc7942_0433 0.73 -1.2 424,567 + Synpcc7942_0433 0.77 -1.0 424,575 - Synpcc7942_0433 0.78 -1.6 424,595 + Synpcc7942_0433 0.80 +1.0 424,625 - Synpcc7942_0433 0.82 -2.4 424,644 + Synpcc7942_0433 0.84 -3.4 424,657 - Synpcc7942_0433 0.85 -0.3 424,783 + -0.6 424,786 - -0.8 424,806 - +1.2 424,835 + +1.0 424,847 - -1.3 424,863 + -2.0 424,871 - +1.7 424,937 + tRNA-Arg Synpcc7942_R0031 0.35 -1.0 424,937 + tRNA-Arg Synpcc7942_R0031 0.35 -0.4 424,937 + tRNA-Arg Synpcc7942_R0031 0.35 -0.6 424,937 + tRNA-Arg Synpcc7942_R0031 0.35 -1.8 424,945 - tRNA-Arg Synpcc7942_R0031 0.46 +1.0 424,962 - tRNA-Arg Synpcc7942_R0031 0.69 +1.0 425,002 - -3.1 425,002 - -1.5 425,012 - +1.4 425,049 + +2.2 425,071 - -0.6 425,076 + +1.0 425,076 + +1.0 425,076 + +1.0 425,076 + -1.3 425,084 - -0.0 425,086 + +1.0 425,086 + +1.0 425,094 - -1.5 425,094 - -1.7 425,094 - -1.6 425,226 + Synpcc7942_0434 0.17 -0.8 425,263 - Synpcc7942_0434 0.20 +1.0 425,334 + Synpcc7942_0434 0.27 -2.2 425,339 - Synpcc7942_0434 0.28 -0.6 425,440 + Synpcc7942_0434 0.38 +0.6 425,646 + Synpcc7942_0434 0.58 +1.0 425,661 - Synpcc7942_0434 0.60 -1.9 425,675 + Synpcc7942_0434 0.61 +3.0 425,680 + Synpcc7942_0434 0.62 +1.0 425,680 + Synpcc7942_0434 0.62 -2.6 425,683 - Synpcc7942_0434 0.62 +0.6 425,683 - Synpcc7942_0434 0.62 -2.2 425,688 - Synpcc7942_0434 0.63 -0.6 425,688 - Synpcc7942_0434 0.63 +1.0 425,696 + Synpcc7942_0434 0.63 +1.0 425,733 + Synpcc7942_0434 0.67 -0.0 425,749 + Synpcc7942_0434 0.69 -3.3 425,757 + Synpcc7942_0434 0.69 +1.0 425,757 + Synpcc7942_0434 0.69 -0.6 425,757 - Synpcc7942_0434 0.69 -1.2 425,758 - Synpcc7942_0434 0.70 -0.6 425,758 - Synpcc7942_0434 0.70 -2.0 425,765 - Synpcc7942_0434 0.70 +1.0 425,772 + Synpcc7942_0434 0.71 -0.0 425,772 + Synpcc7942_0434 0.71 -0.0 425,772 + Synpcc7942_0434 0.71 -1.3 425,772 + Synpcc7942_0434 0.71 -1.8 425,780 - Synpcc7942_0434 0.72 +1.3 425,780 - Synpcc7942_0434 0.72 +1.0 425,780 - Synpcc7942_0434 0.72 -1.3 425,785 - Synpcc7942_0434 0.72 +1.0 425,795 + Synpcc7942_0434 0.73 +1.0 425,798 - Synpcc7942_0434 0.74 -0.6 425,798 - Synpcc7942_0434 0.74 -0.0 425,814 + Synpcc7942_0434 0.75 -0.6 425,840 + Synpcc7942_0434 0.78 -0.6 425,843 - Synpcc7942_0434 0.78 -1.5 425,917 - Synpcc7942_0434 0.85 +1.3 425,960 - Synpcc7942_0434 0.90 +1.0
Or see this region's nucleotide sequence