Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2389

Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Biofilm in Fresh BG11R in Flasks with Spin rep 1
2,459,634	+	oxdC	Synpcc7942_2388	0.40	-0.6
2,459,634	+	oxdC	Synpcc7942_2388	0.40	-0.1
2,459,642	-	oxdC	Synpcc7942_2388	0.41	-1.0
2,459,642	-	oxdC	Synpcc7942_2388	0.41	-0.6
2,459,667	-	oxdC	Synpcc7942_2388	0.43	+0.2
2,459,691	+	oxdC	Synpcc7942_2388	0.45	-1.8
2,459,699	-	oxdC	Synpcc7942_2388	0.46	-0.6
2,459,794	+	oxdC	Synpcc7942_2388	0.54	-0.0
2,459,796	+	oxdC	Synpcc7942_2388	0.54	-1.0
2,460,075	+	oxdC	Synpcc7942_2388	0.78	-2.2
2,460,187	-	oxdC	Synpcc7942_2388	0.88	-2.9
2,460,260	-				-1.6
2,460,264	+				+1.9
2,460,384	+				-1.5
2,460,392	-				+3.7
2,460,392	-				-1.1
2,460,392	-				+0.9
2,460,473	+				+0.4
2,460,621	+				-0.1
2,460,624	-				-0.1
2,460,665	+				-4.1
2,460,729	-		Synpcc7942_2389	0.16	-1.6
2,460,735	+		Synpcc7942_2389	0.17	+1.9
2,460,739	+		Synpcc7942_2389	0.17	+0.9
2,460,745	+		Synpcc7942_2389	0.18	-0.4
2,460,745	+		Synpcc7942_2389	0.18	+0.0
2,460,745	+		Synpcc7942_2389	0.18	-1.1
2,460,745	+		Synpcc7942_2389	0.18	-1.7
2,460,745	+		Synpcc7942_2389	0.18	+0.6
2,460,753	-		Synpcc7942_2389	0.19	-0.9
2,460,784	-		Synpcc7942_2389	0.23	-0.4
2,460,789	-		Synpcc7942_2389	0.23	+0.4
2,460,793	+		Synpcc7942_2389	0.24	+0.5
2,460,818	+		Synpcc7942_2389	0.27	+0.9
2,460,821	+		Synpcc7942_2389	0.27	-0.8
2,460,826	-		Synpcc7942_2389	0.28	-0.6
2,460,835	+		Synpcc7942_2389	0.29	-1.0
2,460,866	+		Synpcc7942_2389	0.33	-3.4
2,460,874	-				-0.9
2,460,898	-		Synpcc7942_2389	0.37	-1.6
2,460,909	+		Synpcc7942_2389	0.38	-2.0
2,460,927	-		Synpcc7942_2389	0.41	-1.3
2,460,927	-		Synpcc7942_2389	0.41	-1.6
2,460,927	-		Synpcc7942_2389	0.41	-1.2
2,460,927	-		Synpcc7942_2389	0.41	-0.8
2,460,930	+		Synpcc7942_2389	0.41	+0.6
2,460,941	+		Synpcc7942_2389	0.42	-1.7
2,460,973	-		Synpcc7942_2389	0.46	-2.2
2,460,973	-		Synpcc7942_2389	0.46	+0.2
2,460,973	-		Synpcc7942_2389	0.46	-2.3
2,461,000	-		Synpcc7942_2389	0.50	-0.5
2,461,036	+		Synpcc7942_2389	0.54	-1.4
2,461,043	+		Synpcc7942_2389	0.55	-0.6
2,461,043	+		Synpcc7942_2389	0.55	-1.6
2,461,044	-		Synpcc7942_2389	0.55	+1.1
2,461,046	-		Synpcc7942_2389	0.56	-1.2
2,461,053	-		Synpcc7942_2389	0.56	+3.1
2,461,063	-		Synpcc7942_2389	0.58	+0.9
2,461,066	+		Synpcc7942_2389	0.58	-0.1
2,461,085	-		Synpcc7942_2389	0.60	-1.6
2,461,103	+		Synpcc7942_2389	0.63	-1.4
2,461,103	+		Synpcc7942_2389	0.63	-0.6
2,461,103	+		Synpcc7942_2389	0.63	-2.0
2,461,103	+		Synpcc7942_2389	0.63	-1.9
2,461,111	-		Synpcc7942_2389	0.64	-1.3
2,461,111	-		Synpcc7942_2389	0.64	+0.9
2,461,111	-		Synpcc7942_2389	0.64	-0.6
2,461,111	-		Synpcc7942_2389	0.64	-1.4
2,461,116	+		Synpcc7942_2389	0.64	+2.5
2,461,137	+		Synpcc7942_2389	0.67	-0.7
2,461,156	-		Synpcc7942_2389	0.69	-0.1
2,461,198	+		Synpcc7942_2389	0.75	-3.0
2,461,224	+		Synpcc7942_2389	0.78	+0.4
2,461,357	-				-3.0
2,461,362	-				+1.6
2,461,396	+				-0.9
2,461,439	-				-1.1
2,461,440	+				-0.8
2,461,441	-				-0.7
2,461,454	-				+0.9
2,461,454	-				-1.5
2,461,456	+				+0.9
2,461,456	+				-1.3
2,461,458	+				-0.9
2,461,458	+				+0.4
2,461,463	+				+4.6
2,461,464	-				-3.6
2,461,464	-				+0.7
2,461,464	-				-1.1
2,461,491	+				+0.5
2,461,501	+				-0.1
2,461,501	+				-1.5
2,461,544	-				-4.0
2,461,558	-				+0.2
2,461,560	+				+0.5
2,461,568	-				+0.9
2,461,623	+				+1.5
2,461,624	-				-0.8
2,461,658	+				-1.3
2,461,693	-				+0.1
2,461,715	+				-2.2
2,461,721	+				-0.6
2,461,728	-				-0.9
2,461,741	-				-2.6
2,461,741	-				-1.5
2,461,745	+				-1.2
2,461,745	+				+1.7
2,461,750	+				+0.9
2,461,751	-				+0.9
2,461,756	-				-0.0
2,461,758	-				+0.9
2,461,758	-				-0.5
2,461,763	+				-1.5
2,461,765	-				+0.9
2,461,831	+		Synpcc7942_2390	0.11	-0.1
2,461,831	+		Synpcc7942_2390	0.11	+0.9
2,461,839	-		Synpcc7942_2390	0.11	-1.1
2,461,839	-		Synpcc7942_2390	0.11	-0.8
2,461,841	+		Synpcc7942_2390	0.11	-0.8
2,461,841	+		Synpcc7942_2390	0.11	-0.9
2,461,841	+		Synpcc7942_2390	0.11	+0.9
2,461,841	+		Synpcc7942_2390	0.11	-0.1
2,461,849	-		Synpcc7942_2390	0.11	-0.6
2,461,849	-		Synpcc7942_2390	0.11	-1.8
2,461,849	-		Synpcc7942_2390	0.11	-3.0
2,461,862	-		Synpcc7942_2390	0.12	-0.7
2,461,881	-		Synpcc7942_2390	0.12	-0.6
2,461,881	-		Synpcc7942_2390	0.12	+2.4
2,461,881	-		Synpcc7942_2390	0.12	-1.2
2,461,949	+		Synpcc7942_2390	0.14	-0.4
2,461,949	+		Synpcc7942_2390	0.14	-2.4
2,461,957	-		Synpcc7942_2390	0.14	+1.1
2,461,957	-		Synpcc7942_2390	0.14	-1.5
2,461,962	-		Synpcc7942_2390	0.14	+1.6
2,461,962	-		Synpcc7942_2390	0.14	-1.8
2,461,990	-		Synpcc7942_2390	0.15	-1.4
2,462,000	+		Synpcc7942_2390	0.15	-0.6
2,462,001	-		Synpcc7942_2390	0.15	-2.6
2,462,074	-		Synpcc7942_2390	0.17	-0.6
2,462,079	-		Synpcc7942_2390	0.18	-1.2
2,462,101	+		Synpcc7942_2390	0.18	-1.4
2,462,105	+		Synpcc7942_2390	0.18	-1.3
2,462,109	-		Synpcc7942_2390	0.18	-0.6
2,462,113	-				+0.7
2,462,119	-		Synpcc7942_2390	0.19	-0.2
2,462,146	+		Synpcc7942_2390	0.19	-3.7
2,462,165	+		Synpcc7942_2390	0.20	+0.9
2,462,166	+		Synpcc7942_2390	0.20	+1.9
2,462,173	-		Synpcc7942_2390	0.20	-0.4
2,462,173	-		Synpcc7942_2390	0.20	+0.9
2,462,193	+		Synpcc7942_2390	0.21	-0.1
2,462,193	+		Synpcc7942_2390	0.21	-1.1
2,462,201	-		Synpcc7942_2390	0.21	-0.4
2,462,209	-		Synpcc7942_2390	0.21	+0.9
2,462,215	+		Synpcc7942_2390	0.21	-0.1
2,462,223	-		Synpcc7942_2390	0.21	-1.7
2,462,231	+		Synpcc7942_2390	0.22	-0.2
2,462,239	-		Synpcc7942_2390	0.22	-1.3
2,462,252	+				+0.2
2,462,260	-		Synpcc7942_2390	0.22	-4.3
2,462,260	-		Synpcc7942_2390	0.22	-2.5
2,462,267	-		Synpcc7942_2390	0.23	+2.2
2,462,273	+		Synpcc7942_2390	0.23	-2.3
2,462,277	-		Synpcc7942_2390	0.23	-0.6
2,462,292	-		Synpcc7942_2390	0.23	-1.5
2,462,335	+		Synpcc7942_2390	0.24	+0.9
2,462,350	+		Synpcc7942_2390	0.25	+0.9
2,462,359	-		Synpcc7942_2390	0.25	-3.1
2,462,361	+		Synpcc7942_2390	0.25	+2.3
2,462,366	+		Synpcc7942_2390	0.25	-1.6
2,462,366	+		Synpcc7942_2390	0.25	-1.5
2,462,366	+		Synpcc7942_2390	0.25	-2.6
2,462,369	-		Synpcc7942_2390	0.25	-1.4
2,462,397	+				-1.5