Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2094

Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Biofilm in Fresh BG11R in Flasks with Spin rep 1
2,175,235	+	chpY	Synpcc7942_2093	0.28	-1.1
2,175,253	+	chpY	Synpcc7942_2093	0.30	-0.1
2,175,253	-	chpY	Synpcc7942_2093	0.30	-0.1
2,175,319	+	chpY	Synpcc7942_2093	0.35	+0.9
2,175,320	+	chpY	Synpcc7942_2093	0.35	-1.4
2,175,351	+	chpY	Synpcc7942_2093	0.37	+0.9
2,175,359	-	chpY	Synpcc7942_2093	0.38	+0.9
2,175,386	+	chpY	Synpcc7942_2093	0.40	-1.9
2,175,422	+	chpY	Synpcc7942_2093	0.43	+0.9
2,175,427	+	chpY	Synpcc7942_2093	0.43	-0.1
2,175,435	-	chpY	Synpcc7942_2093	0.44	-0.1
2,175,464	-	chpY	Synpcc7942_2093	0.46	+0.9
2,175,469	-	chpY	Synpcc7942_2093	0.46	+0.9
2,175,478	-	chpY	Synpcc7942_2093	0.47	+0.9
2,175,496	+	chpY	Synpcc7942_2093	0.48	-3.5
2,175,504	-	chpY	Synpcc7942_2093	0.49	+0.9
2,175,631	-	chpY	Synpcc7942_2093	0.59	-0.1
2,175,635	+	chpY	Synpcc7942_2093	0.59	-4.4
2,175,681	+	chpY	Synpcc7942_2093	0.63	+0.9
2,175,681	+	chpY	Synpcc7942_2093	0.63	+0.9
2,175,709	+	chpY	Synpcc7942_2093	0.65	-0.1
2,175,712	-	chpY	Synpcc7942_2093	0.65	+0.9
2,175,714	+	chpY	Synpcc7942_2093	0.65	-1.1
2,175,717	-	chpY	Synpcc7942_2093	0.66	+0.9
2,175,733	-	chpY	Synpcc7942_2093	0.67	-1.5
2,175,740	+	chpY	Synpcc7942_2093	0.67	+0.9
2,175,740	+	chpY	Synpcc7942_2093	0.67	-2.8
2,175,740	+	chpY	Synpcc7942_2093	0.67	-1.4
2,175,743	-	chpY	Synpcc7942_2093	0.68	-0.1
2,175,748	-	chpY	Synpcc7942_2093	0.68	-1.1
2,175,763	-	chpY	Synpcc7942_2093	0.69	-0.6
2,175,768	-	chpY	Synpcc7942_2093	0.69	-3.2
2,175,768	-	chpY	Synpcc7942_2093	0.69	-1.6
2,175,811	+	chpY	Synpcc7942_2093	0.73	+0.9
2,175,811	-	chpY	Synpcc7942_2093	0.73	-0.1
2,175,820	+	chpY	Synpcc7942_2093	0.73	+0.9
2,175,825	+	chpY	Synpcc7942_2093	0.74	+0.9
2,175,830	+	chpY	Synpcc7942_2093	0.74	+0.9
2,175,833	-	chpY	Synpcc7942_2093	0.74	-2.5
2,175,877	-	chpY	Synpcc7942_2093	0.78	+0.9
2,175,892	+	chpY	Synpcc7942_2093	0.79	+0.9
2,175,902	-	chpY	Synpcc7942_2093	0.80	-1.4
2,175,931	-	chpY	Synpcc7942_2093	0.82	-0.6
2,175,982	+	chpY	Synpcc7942_2093	0.86	-0.3
2,175,986	+	chpY	Synpcc7942_2093	0.86	-2.2
2,175,994	-	chpY	Synpcc7942_2093	0.87	-0.1
2,176,009	+	chpY	Synpcc7942_2093	0.88	+0.9
2,176,028	+	chpY	Synpcc7942_2093	0.90	+0.9
2,176,029	-	chpY	Synpcc7942_2093	0.90	-0.1
2,176,033	+				+0.9
2,176,033	+				-0.4
2,176,199	-				-1.1
2,176,199	-				-2.9
2,176,205	-				-0.6
2,176,259	+		Synpcc7942_2094	0.12	-1.1
2,176,267	-		Synpcc7942_2094	0.14	-0.9
2,176,281	+		Synpcc7942_2094	0.18	-0.9
2,176,285	-		Synpcc7942_2094	0.19	-1.3
2,176,298	+		Synpcc7942_2094	0.22	-4.1
2,176,329	-		Synpcc7942_2094	0.30	+0.4
2,176,329	-		Synpcc7942_2094	0.30	-0.9
2,176,353	+		Synpcc7942_2094	0.36	-2.3
2,176,356	+		Synpcc7942_2094	0.37	-0.1
2,176,377	-		Synpcc7942_2094	0.42	-0.6
2,176,380	+		Synpcc7942_2094	0.43	+0.9
2,176,388	-		Synpcc7942_2094	0.45	+0.9
2,176,442	-		Synpcc7942_2094	0.58	-2.8
2,176,447	-		Synpcc7942_2094	0.59	-0.7
2,176,613	-				+1.8
2,176,732	-				-1.0
2,176,732	-				+0.1
2,176,732	-				-0.1
2,176,732	-				+0.8
2,176,732	-				+1.7
2,176,774	+				-0.6
2,176,774	+				-0.3
2,176,774	+				-1.0
2,176,774	+				+1.1
2,176,774	+				+1.4
2,176,774	+				+0.5
2,176,782	-				-2.7
2,176,835	+				-0.0
2,176,841	-				-0.8
2,176,843	+				-0.4
2,176,845	+				-1.1
2,176,954	+		Synpcc7942_2095	0.26	-2.1
2,176,984	+		Synpcc7942_2095	0.34	+3.3
2,176,989	+		Synpcc7942_2095	0.35	+1.2
2,176,997	-		Synpcc7942_2095	0.37	+0.9
2,177,003	-		Synpcc7942_2095	0.39	-3.1
2,177,042	-		Synpcc7942_2095	0.49	-0.9
2,177,042	-		Synpcc7942_2095	0.49	-2.4
2,177,116	+		Synpcc7942_2095	0.68	+1.7
2,177,129	-		Synpcc7942_2095	0.71	-0.4
2,177,150	-		Synpcc7942_2095	0.77	-2.6
2,177,197	+		Synpcc7942_2095	0.89	-1.2
2,177,295	-				-0.9
2,177,318	-				-0.4
2,177,318	-				-0.1
2,177,320	+				+0.9
2,177,328	-				-1.4
2,177,364	-				+1.5
2,177,389	+				+0.9
2,177,399	-				-1.2
2,177,514	+				+0.5
2,177,550	+				-2.4