Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1970

Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Biofilm in Fresh BG11R in Flasks with Spin rep 1
2,040,040	+				+0.8
2,040,111	+				-0.9
2,040,111	+				-0.5
2,040,111	+				-0.1
2,040,111	+				+1.2
2,040,111	+				-0.4
2,040,111	+				+1.0
2,040,111	+				-0.8
2,040,119	-				-0.3
2,040,119	-				-1.3
2,040,119	-				-0.3
2,040,119	-				+1.3
2,040,214	-				-0.6
2,040,260	-				-2.1
2,040,315	-				-2.0
2,040,476	-				-2.0
2,040,615	+		Synpcc7942_1969	0.37	+0.7
2,040,633	-		Synpcc7942_1969	0.42	+0.9
2,040,661	+		Synpcc7942_1969	0.49	-1.3
2,040,697	-		Synpcc7942_1969	0.59	-0.4
2,040,745	-		Synpcc7942_1969	0.72	-3.1
2,040,914	-				-0.1
2,040,941	-				+1.2
2,040,943	+				-1.4
2,040,963	-				-1.2
2,040,996	-				-0.3
2,041,043	-				-2.8
2,041,102	+		Synpcc7942_1970	0.14	+0.9
2,041,152	+		Synpcc7942_1970	0.26	-1.3
2,041,162	+		Synpcc7942_1970	0.28	+0.4
2,041,224	-		Synpcc7942_1970	0.42	+2.5
2,041,413	+		Synpcc7942_1970	0.84	-2.5
2,041,414	+		Synpcc7942_1970	0.84	+0.9
2,041,421	-		Synpcc7942_1970	0.86	-0.5
2,041,484	+				-1.1
2,041,507	-				+0.7
2,041,548	-				-0.4
2,041,573	-	ama	Synpcc7942_1971	0.12	-2.2
2,041,575	+	ama	Synpcc7942_1971	0.12	-0.1
2,041,583	-	ama	Synpcc7942_1971	0.13	-0.1
2,041,583	-	ama	Synpcc7942_1971	0.13	+1.4
2,041,621	+	ama	Synpcc7942_1971	0.18	-0.8
2,041,629	-	ama	Synpcc7942_1971	0.19	-1.4
2,041,633	+	ama	Synpcc7942_1971	0.20	-2.0
2,041,757	-	ama	Synpcc7942_1971	0.36	-3.9
2,041,789	-	ama	Synpcc7942_1971	0.41	-0.7
2,041,801	-	ama	Synpcc7942_1971	0.42	+1.3
2,041,815	+	ama	Synpcc7942_1971	0.44	-2.9
2,041,842	-	ama	Synpcc7942_1971	0.48	-0.9
2,041,871	-	ama	Synpcc7942_1971	0.51	-0.3
2,041,886	+	ama	Synpcc7942_1971	0.53	+2.3
2,041,886	+	ama	Synpcc7942_1971	0.53	+0.9
2,041,886	+	ama	Synpcc7942_1971	0.53	+0.9
2,041,886	+	ama	Synpcc7942_1971	0.53	-1.0
2,041,886	+	ama	Synpcc7942_1971	0.53	-1.5
2,041,886	+	ama	Synpcc7942_1971	0.53	-0.1
2,041,894	-	ama	Synpcc7942_1971	0.54	-1.9
2,041,894	-	ama	Synpcc7942_1971	0.54	-4.6
2,041,898	+	ama	Synpcc7942_1971	0.55	+0.9
2,041,898	+	ama	Synpcc7942_1971	0.55	+1.8
2,041,906	-	ama	Synpcc7942_1971	0.56	+0.3
2,041,906	-	ama	Synpcc7942_1971	0.56	-0.8
2,041,909	+	ama	Synpcc7942_1971	0.56	+0.2
2,041,916	+	ama	Synpcc7942_1971	0.57	-1.5
2,041,916	+	ama	Synpcc7942_1971	0.57	+1.9
2,041,928	-	ama	Synpcc7942_1971	0.59	-0.6
2,041,929	-	ama	Synpcc7942_1971	0.59	+0.5
2,041,949	+	ama	Synpcc7942_1971	0.62	-0.1
2,041,957	-	ama	Synpcc7942_1971	0.63	+1.9
2,041,999	+	ama	Synpcc7942_1971	0.68	-0.7
2,042,000	-	ama	Synpcc7942_1971	0.68	-0.2
2,042,007	-	ama	Synpcc7942_1971	0.69	-1.4
2,042,012	-	ama	Synpcc7942_1971	0.70	-0.1
2,042,012	-	ama	Synpcc7942_1971	0.70	-0.3
2,042,025	+	ama	Synpcc7942_1971	0.72	+0.9
2,042,049	+	ama	Synpcc7942_1971	0.75	-1.1
2,042,057	+	ama	Synpcc7942_1971	0.76	-1.0
2,042,057	+	ama	Synpcc7942_1971	0.76	+0.9
2,042,065	-	ama	Synpcc7942_1971	0.77	+1.9
2,042,065	-	ama	Synpcc7942_1971	0.77	+0.9
2,042,066	+	ama	Synpcc7942_1971	0.77	-1.0
2,042,074	+	ama	Synpcc7942_1971	0.78	-2.6
2,042,080	+	ama	Synpcc7942_1971	0.79	-1.4
2,042,085	+	ama	Synpcc7942_1971	0.80	-0.6
2,042,088	-	ama	Synpcc7942_1971	0.80	-0.5
2,042,088	-	ama	Synpcc7942_1971	0.80	-1.4
2,042,088	-	ama	Synpcc7942_1971	0.80	-0.5
2,042,143	-	ama	Synpcc7942_1971	0.87	+0.7
2,042,148	-	ama	Synpcc7942_1971	0.88	-0.1
2,042,148	-	ama	Synpcc7942_1971	0.88	-1.1
2,042,150	+	ama	Synpcc7942_1971	0.88	+0.2
2,042,158	-	ama	Synpcc7942_1971	0.89	-0.5
2,042,158	-	ama	Synpcc7942_1971	0.89	-1.1
2,042,185	+				-0.4
2,042,221	+				-0.7
2,042,221	+				-0.9
2,042,226	+				+0.3
2,042,229	-				+2.9
2,042,229	-				+0.3
2,042,229	-				+0.9
2,042,300	+				+2.5
2,042,300	+				+0.5
2,042,352	+				-2.2
2,042,362	+				-1.6
2,042,383	+		Synpcc7942_1972	0.12	+0.9
2,042,386	-		Synpcc7942_1972	0.12	-1.0
2,042,418	-		Synpcc7942_1972	0.17	-1.3
2,042,430	-		Synpcc7942_1972	0.18	-0.2
2,042,444	-		Synpcc7942_1972	0.20	+1.4
2,042,446	-		Synpcc7942_1972	0.20	+1.5
2,042,470	-		Synpcc7942_1972	0.23	-0.3