Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1805

Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Biofilm in Fresh BG11R in Flasks with Spin rep 1
1,873,510	+		Synpcc7942_1803	0.37	+0.3
1,873,510	+		Synpcc7942_1803	0.37	-1.6
1,873,654	-		Synpcc7942_1803	0.70	-2.6
1,873,692	+		Synpcc7942_1803	0.79	-1.2
1,873,700	-		Synpcc7942_1803	0.81	-1.0
1,873,719	-		Synpcc7942_1803	0.85	-2.0
1,873,738	+		Synpcc7942_1803	0.90	-3.8
1,873,746	-				-0.1
1,873,748	-				-0.3
1,873,780	-				-1.5
1,873,780	-				-0.8
1,873,815	-				+0.5
1,873,818	+				-0.3
1,873,826	-				-0.5
1,873,850	+				-1.4
1,873,858	-				-2.4
1,873,860	+				-1.5
1,873,860	+				-1.5
1,873,860	+				-1.5
1,873,865	-				-0.4
1,873,868	-				-1.1
1,873,881	+				-0.3
1,873,894	-				-1.1
1,873,923	-		Synpcc7942_1804	0.14	-0.1
1,873,929	+		Synpcc7942_1804	0.15	-0.1
1,873,937	-		Synpcc7942_1804	0.17	+3.1
1,873,950	+		Synpcc7942_1804	0.19	+0.5
1,873,993	+		Synpcc7942_1804	0.27	-0.5
1,874,046	+		Synpcc7942_1804	0.37	-1.7
1,874,066	+		Synpcc7942_1804	0.40	-0.4
1,874,076	+		Synpcc7942_1804	0.42	-2.2
1,874,110	+		Synpcc7942_1804	0.48	-1.9
1,874,110	+		Synpcc7942_1804	0.48	-0.6
1,874,118	+		Synpcc7942_1804	0.50	+0.9
1,874,126	-		Synpcc7942_1804	0.51	+0.1
1,874,126	-		Synpcc7942_1804	0.51	+0.2
1,874,126	-		Synpcc7942_1804	0.51	+1.6
1,874,154	-		Synpcc7942_1804	0.56	+0.9
1,874,170	+		Synpcc7942_1804	0.59	+0.7
1,874,174	+		Synpcc7942_1804	0.60	+0.9
1,874,184	+		Synpcc7942_1804	0.61	+1.9
1,874,184	+		Synpcc7942_1804	0.61	+1.5
1,874,184	+		Synpcc7942_1804	0.61	+0.9
1,874,219	+		Synpcc7942_1804	0.68	+0.3
1,874,236	-		Synpcc7942_1804	0.71	+0.3
1,874,291	+		Synpcc7942_1804	0.81	+0.6
1,874,292	+		Synpcc7942_1804	0.81	-0.6
1,874,327	+		Synpcc7942_1804	0.87	-1.1
1,874,346	-				-0.3
1,874,370	-				-1.3
1,874,370	-				-1.2
1,874,371	+				+0.1
1,874,502	+				-2.5
1,875,171	+	hetI	Synpcc7942_1805	0.89	+0.9
1,875,171	+	hetI	Synpcc7942_1805	0.89	-3.1
1,875,177	+				+1.7
1,875,177	+				+0.1
1,875,179	+				-0.3
1,875,185	-				-0.7
1,875,218	+				-1.0
1,875,231	+				+0.9
1,875,237	+				+0.9
1,875,238	+				+1.9
1,875,239	+				+0.9
1,875,257	+				-1.1
1,875,257	+				-0.4
1,875,258	-				-1.1
1,875,280	-				-1.3
1,875,321	+	prxQ-A2	Synpcc7942_1806	0.11	-0.7
1,875,329	+	prxQ-A2	Synpcc7942_1806	0.13	-1.6
1,875,338	+	prxQ-A2	Synpcc7942_1806	0.15	+1.4
1,875,353	-				+0.9
1,875,361	-	prxQ-A2	Synpcc7942_1806	0.20	-1.0
1,875,372	-	prxQ-A2	Synpcc7942_1806	0.22	-0.4
1,875,404	+	prxQ-A2	Synpcc7942_1806	0.29	-1.4
1,875,409	-	prxQ-A2	Synpcc7942_1806	0.30	+0.5
1,875,463	+	prxQ-A2	Synpcc7942_1806	0.41	-1.6
1,875,464	+	prxQ-A2	Synpcc7942_1806	0.41	-1.3
1,875,472	-	prxQ-A2	Synpcc7942_1806	0.43	-0.9
1,875,472	-	prxQ-A2	Synpcc7942_1806	0.43	-2.9
1,875,476	+	prxQ-A2	Synpcc7942_1806	0.44	+0.6
1,875,499	-	prxQ-A2	Synpcc7942_1806	0.49	+1.4
1,875,504	-	prxQ-A2	Synpcc7942_1806	0.50	+1.9
1,875,525	+	prxQ-A2	Synpcc7942_1806	0.54	-0.7
1,875,533	-	prxQ-A2	Synpcc7942_1806	0.56	-1.2
1,875,545	-	prxQ-A2	Synpcc7942_1806	0.58	-0.9
1,875,607	+	prxQ-A2	Synpcc7942_1806	0.72	-0.3
1,875,617	-	prxQ-A2	Synpcc7942_1806	0.74	-1.0
1,875,617	-	prxQ-A2	Synpcc7942_1806	0.74	-1.1
1,875,651	+	prxQ-A2	Synpcc7942_1806	0.81	-2.1
1,875,666	+	prxQ-A2	Synpcc7942_1806	0.84	-0.4
1,875,666	+				-1.9
1,875,674	-	prxQ-A2	Synpcc7942_1806	0.86	-1.8
1,875,686	-	prxQ-A2	Synpcc7942_1806	0.88	-1.7
1,875,715	+				-0.3
1,875,715	+				-0.8
1,875,723	-				+1.9
1,875,742	+				+1.9
1,875,773	+				-0.1
1,875,773	+				+1.2
1,875,773	+				-1.8
1,875,773	-				+0.1
1,875,778	+				+2.4
1,875,787	+				-0.9
1,875,808	+				+1.0
1,875,808	+				-0.5
1,875,808	+				-1.4
1,875,816	-				-0.5
1,875,832	+				-0.1
1,875,840	-				+0.1
1,875,840	-				+0.9
1,875,897	-	mutT	Synpcc7942_1807	0.22	-1.8
1,875,897	-	mutT	Synpcc7942_1807	0.22	-0.5
1,875,916	+	mutT	Synpcc7942_1807	0.27	+0.5
1,875,916	+	mutT	Synpcc7942_1807	0.27	-2.7
1,875,916	+	mutT	Synpcc7942_1807	0.27	-0.6
1,875,916	+	mutT	Synpcc7942_1807	0.27	+1.5
1,875,916	+	mutT	Synpcc7942_1807	0.27	+0.9
1,875,928	+	mutT	Synpcc7942_1807	0.29	-3.4
1,875,936	-	mutT	Synpcc7942_1807	0.31	+0.9
1,875,936	-	mutT	Synpcc7942_1807	0.31	+0.9
1,876,014	+	mutT	Synpcc7942_1807	0.49	-1.2
1,876,027	+	mutT	Synpcc7942_1807	0.51	+1.9
1,876,033	+	mutT	Synpcc7942_1807	0.53	+0.7
1,876,033	+	mutT	Synpcc7942_1807	0.53	-1.5
1,876,033	+	mutT	Synpcc7942_1807	0.53	-0.1
1,876,033	+	mutT	Synpcc7942_1807	0.53	+1.5
1,876,041	-	mutT	Synpcc7942_1807	0.55	+0.9
1,876,041	-	mutT	Synpcc7942_1807	0.55	-0.1
1,876,041	-	mutT	Synpcc7942_1807	0.55	-0.9
1,876,041	-	mutT	Synpcc7942_1807	0.55	-1.6
1,876,054	-	mutT	Synpcc7942_1807	0.57	-1.1
1,876,085	-	mutT	Synpcc7942_1807	0.64	-0.8
1,876,133	-	mutT	Synpcc7942_1807	0.75	+0.9
1,876,141	-	mutT	Synpcc7942_1807	0.77	+2.2
1,876,150	+	mutT	Synpcc7942_1807	0.79	+1.3
1,876,173	-	mutT	Synpcc7942_1807	0.84	+2.7
1,876,177	+	mutT	Synpcc7942_1807	0.85	-1.6
1,876,177	+	mutT	Synpcc7942_1807	0.85	+0.9
1,876,179	-	mutT	Synpcc7942_1807	0.85	+0.9
1,876,185	+	mutT	Synpcc7942_1807	0.87	-2.9
1,876,185	-	mutT	Synpcc7942_1807	0.87	+2.5
1,876,185	-				-0.6
1,876,193	-	mutT	Synpcc7942_1807	0.89	-2.3
1,876,193	-	mutT	Synpcc7942_1807	0.89	-3.1
1,876,205	+				-1.4
1,876,213	-				-1.9
1,876,213	-				+1.0
1,876,213	-				+3.7
1,876,237	-				-0.1