Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1571

Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Biofilm in Fresh BG11R in Flasks with Spin rep 1
1,629,074	+	pacS	Synpcc7942_1570	0.83	+1.0
1,629,088	+	pacS	Synpcc7942_1570	0.84	+1.0
1,629,125	+	pacS	Synpcc7942_1570	0.86	+1.0
1,629,174	-	pacS	Synpcc7942_1570	0.88	+1.0
1,629,179	+	pacS	Synpcc7942_1570	0.88	+1.0
1,629,200	-	pacS	Synpcc7942_1570	0.89	+1.0
1,629,310	+				+1.0
1,629,310	+				+1.0
1,629,318	-				+2.0
1,629,406	+				+1.0
1,629,435	-				-0.6
1,629,449	+				-0.3
1,629,462	+				+2.2
1,629,464	+				+1.0
1,629,464	+				+1.6
1,629,465	-				-0.8
1,629,498	-				-0.0
1,629,580	+				+1.0
1,629,588	-				+1.0
1,629,588	-				+0.4
1,629,598	-				+1.4
1,629,598	-				-0.7
1,629,598	-				+0.6
1,629,598	-				-0.6
1,629,610	-				-0.5
1,629,620	+				-1.3
1,629,620	+				-0.4
1,629,623	+				-4.2
1,629,628	-				-0.9
1,629,633	-				+2.0
1,629,658	-				-2.2
1,629,674	-				-0.4
1,629,693	+				+1.8
1,629,722	+				-2.6
1,629,722	+				+0.5
1,629,793	+				-0.8
1,629,807	-				+1.0
1,629,809	-				-1.3
1,629,814	-				-2.6
1,629,814	-				-0.6
1,629,814	-				-2.6
1,629,825	+				+2.0
1,629,905	-				+0.6
1,629,911	-				+1.0
1,629,917	-				-2.1
1,629,917	-				+1.0
1,629,917	-				+1.0
1,629,927	+				+1.4
1,629,927	+				-0.4
1,629,945	-				-1.7
1,629,945	-				-2.0
1,629,990	-				+1.0
1,629,990	-				+2.0
1,630,071	+				-2.2
1,630,087	-				-1.3
1,630,092	-				+1.6
1,630,094	+				-0.4
1,630,094	+				-1.3
1,630,150	-	smpX	Synpcc7942_1571	0.11	-0.0
1,630,266	+	smpX	Synpcc7942_1571	0.25	-3.1
1,630,266	+	smpX	Synpcc7942_1571	0.25	-1.3
1,630,277	+	smpX	Synpcc7942_1571	0.26	-0.2
1,630,307	-	smpX	Synpcc7942_1571	0.30	+1.0
1,630,393	+				-0.0
1,630,447	-	smpX	Synpcc7942_1571	0.47	-0.0
1,630,454	+	smpX	Synpcc7942_1571	0.48	-1.7
1,630,507	+	smpX	Synpcc7942_1571	0.55	-1.2
1,630,517	-	smpX	Synpcc7942_1571	0.56	-0.3
1,630,543	-	smpX	Synpcc7942_1571	0.59	-1.0
1,630,560	+	smpX	Synpcc7942_1571	0.61	+1.0
1,630,606	-	smpX	Synpcc7942_1571	0.67	-2.1
1,630,606	-	smpX	Synpcc7942_1571	0.67	-1.9
1,630,681	+	smpX	Synpcc7942_1571	0.76	-0.0
1,630,740	-	smpX	Synpcc7942_1571	0.84	+0.4
1,630,820	+				+4.0
1,630,821	+				-2.0
1,630,828	-				+0.4
1,630,894	-				-0.8
1,630,926	-				-2.5
1,631,022	-				+0.1
1,631,116	-				-1.7
1,631,153	+				-4.5
1,631,153	+				-0.3
1,631,187	+				+0.4
1,631,201	+				-0.4
1,631,201	+				-1.6
1,631,201	+				-1.7
1,631,201	+				+1.5
1,631,201	+				+0.2
1,631,209	-				-0.8
1,631,209	-				-0.6
1,631,209	-				+1.9
1,631,225	+				+2.0
1,631,225	+				+1.0
1,631,225	+				-1.0
1,631,233	-				-0.0
1,631,233	-				-2.1
1,631,233	-				-1.5
1,631,242	-				-0.9
1,631,262	+				+1.0
1,631,269	+				+2.0
1,631,279	+				-0.0
1,631,279	+				+1.0
1,631,279	+				+2.0
1,631,287	-				-0.1
1,631,287	-				-1.7
1,631,287	-				-1.2
1,631,287	-				-0.8
1,631,287	-				-0.5
1,631,357	+				-3.2
1,631,374	+				+0.7
1,631,382	-				-1.5
1,631,388	-				+2.0
1,631,454	+				-0.8
1,631,454	+				+1.1
1,631,462	-				-0.7
1,631,498	-		Synpcc7942_1572	0.10	-1.3
1,631,498	-		Synpcc7942_1572	0.10	-1.6
1,631,523	+		Synpcc7942_1572	0.12	-0.0
1,631,528	+		Synpcc7942_1572	0.12	+1.0
1,631,531	-		Synpcc7942_1572	0.12	-2.6
1,631,533	-		Synpcc7942_1572	0.12	-1.0
1,631,564	-		Synpcc7942_1572	0.14	+2.0
1,631,577	+		Synpcc7942_1572	0.15	-0.6
1,631,580	+		Synpcc7942_1572	0.15	-1.3
1,631,592	+		Synpcc7942_1572	0.16	-0.0
1,631,602	+		Synpcc7942_1572	0.17	+3.3
1,631,612	+		Synpcc7942_1572	0.17	-2.1
1,631,612	+		Synpcc7942_1572	0.17	-1.0
1,631,620	-		Synpcc7942_1572	0.18	-1.3
1,631,620	-		Synpcc7942_1572	0.18	-0.5
1,631,620	-		Synpcc7942_1572	0.18	-1.0
1,631,620	-		Synpcc7942_1572	0.18	-2.0
1,631,630	-		Synpcc7942_1572	0.18	+1.0
1,631,638	+		Synpcc7942_1572	0.19	-1.0
1,631,645	-		Synpcc7942_1572	0.19	-2.0
1,631,646	-		Synpcc7942_1572	0.19	+1.0
1,631,648	+		Synpcc7942_1572	0.19	-1.7
1,631,705	-		Synpcc7942_1572	0.23	-0.0
1,631,713	-		Synpcc7942_1572	0.24	-1.0
1,631,715	-		Synpcc7942_1572	0.24	+0.6
1,631,778	+		Synpcc7942_1572	0.28	+2.0
1,631,784	+		Synpcc7942_1572	0.28	+0.2
1,631,784	+		Synpcc7942_1572	0.28	+0.8
1,631,786	+		Synpcc7942_1572	0.28	-0.0
1,631,786	+		Synpcc7942_1572	0.28	+0.6
1,631,794	-		Synpcc7942_1572	0.29	+1.0
1,631,808	+		Synpcc7942_1572	0.30	+1.2
1,631,808	+		Synpcc7942_1572	0.30	-0.0
1,631,808	+				-1.8
1,631,808	+		Synpcc7942_1572	0.30	-2.6
1,631,808	+		Synpcc7942_1572	0.30	-2.8
1,631,808	+		Synpcc7942_1572	0.30	-0.3
1,631,808	+		Synpcc7942_1572	0.30	-0.0
1,631,808	+		Synpcc7942_1572	0.30	+4.2
1,631,808	+		Synpcc7942_1572	0.30	+1.0
1,631,808	+		Synpcc7942_1572	0.30	-0.9
1,631,816	-		Synpcc7942_1572	0.30	-0.0
1,631,816	-		Synpcc7942_1572	0.30	-3.5
1,631,816	-		Synpcc7942_1572	0.30	-1.3
1,631,816	-		Synpcc7942_1572	0.30	-1.0
1,631,816	-		Synpcc7942_1572	0.30	+1.2
1,631,816	-		Synpcc7942_1572	0.30	-0.9
1,631,816	-		Synpcc7942_1572	0.30	+1.6
1,631,816	-		Synpcc7942_1572	0.30	-1.1
1,631,816	-		Synpcc7942_1572	0.30	+1.0
1,631,816	-		Synpcc7942_1572	0.30	-3.0
1,631,830	+		Synpcc7942_1572	0.31	-0.6
1,631,830	+		Synpcc7942_1572	0.31	+1.0
1,631,830	+		Synpcc7942_1572	0.31	+0.1
1,631,838	-		Synpcc7942_1572	0.31	-0.2
1,631,840	-		Synpcc7942_1572	0.32	-0.6
1,631,850	+		Synpcc7942_1572	0.32	-1.0
1,631,856	+		Synpcc7942_1572	0.33	+1.2
1,631,858	-		Synpcc7942_1572	0.33	-3.2
1,631,863	-		Synpcc7942_1572	0.33	-0.9
1,631,864	-		Synpcc7942_1572	0.33	-0.1
1,631,864	-		Synpcc7942_1572	0.33	+1.0
1,631,864	-		Synpcc7942_1572	0.33	+0.2
1,631,864	-		Synpcc7942_1572	0.33	-1.6
1,631,869	+		Synpcc7942_1572	0.33	-0.3