Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ppk and Synpcc7942_1567 are separated by 57 nucleotides Synpcc7942_1567 and Synpcc7942_1568 are separated by 337 nucleotides Synpcc7942_1568 and Synpcc7942_1569 are separated by 57 nucleotides
Synpcc7942_1566: ppk - polyphosphate kinase, at 1,623,449 to 1,625,644
ppk
Synpcc7942_1567: Synpcc7942_1567 - possible ribosomal protein L36, at 1,625,702 to 1,626,019
_1567
Synpcc7942_1568: Synpcc7942_1568 - hypothetical protein, at 1,626,357 to 1,626,596
_1568
Synpcc7942_1569: Synpcc7942_1569 - hypothetical protein, at 1,626,654 to 1,627,115
_1569
Position (kb) 1625
1626
1627 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1624.710 kb on - strand, within ppk at 1624.737 kb on + strand, within ppk at 1624.794 kb on - strand, within ppk at 1624.802 kb on + strand, within ppk at 1624.824 kb on - strand, within ppk at 1624.859 kb on + strand, within ppk at 1624.867 kb on - strand, within ppk at 1624.867 kb on - strand, within ppk at 1624.874 kb on - strand, within ppk at 1624.896 kb on - strand, within ppk at 1624.898 kb on + strand, within ppk at 1624.940 kb on + strand, within ppk at 1624.974 kb on - strand, within ppk at 1624.989 kb on - strand, within ppk at 1624.991 kb on + strand, within ppk at 1624.999 kb on - strand, within ppk at 1625.117 kb on - strand at 1625.229 kb on - strand, within ppk at 1625.238 kb on - strand, within ppk at 1625.240 kb on + strand, within ppk at 1625.286 kb on + strand, within ppk at 1625.286 kb on - strand, within ppk at 1625.319 kb on - strand, within ppk at 1625.428 kb on + strand at 1625.429 kb on - strand at 1625.433 kb on + strand at 1625.434 kb on - strand at 1625.492 kb on - strand at 1625.550 kb on + strand at 1625.553 kb on + strand at 1625.556 kb on - strand at 1625.563 kb on - strand at 1625.602 kb on - strand at 1625.630 kb on + strand at 1625.638 kb on - strand at 1625.651 kb on + strand at 1625.656 kb on + strand at 1625.656 kb on + strand at 1625.664 kb on - strand at 1625.672 kb on - strand at 1625.680 kb on + strand at 1625.771 kb on - strand, within Synpcc7942_1567 at 1625.795 kb on - strand, within Synpcc7942_1567 at 1625.821 kb on + strand, within Synpcc7942_1567 at 1625.825 kb on + strand, within Synpcc7942_1567 at 1625.842 kb on + strand, within Synpcc7942_1567 at 1625.850 kb on - strand, within Synpcc7942_1567 at 1625.850 kb on - strand, within Synpcc7942_1567 at 1625.968 kb on - strand, within Synpcc7942_1567 at 1626.019 kb on - strand at 1626.049 kb on + strand at 1626.091 kb on - strand at 1626.091 kb on - strand at 1626.092 kb on + strand at 1626.092 kb on + strand at 1626.092 kb on + strand at 1626.100 kb on - strand at 1626.100 kb on - strand at 1626.100 kb on - strand at 1626.100 kb on - strand at 1626.135 kb on - strand at 1626.135 kb on - strand at 1626.152 kb on + strand at 1626.160 kb on - strand at 1626.160 kb on - strand at 1626.179 kb on - strand at 1626.204 kb on + strand at 1626.227 kb on - strand at 1626.251 kb on + strand at 1626.251 kb on + strand at 1626.259 kb on - strand at 1626.264 kb on - strand at 1626.276 kb on + strand at 1626.305 kb on + strand at 1626.318 kb on - strand at 1626.323 kb on + strand at 1626.366 kb on - strand at 1626.391 kb on + strand, within Synpcc7942_1568 at 1626.391 kb on + strand, within Synpcc7942_1568 at 1626.394 kb on - strand, within Synpcc7942_1568 at 1626.399 kb on - strand, within Synpcc7942_1568 at 1626.399 kb on - strand, within Synpcc7942_1568 at 1626.403 kb on - strand, within Synpcc7942_1568 at 1626.518 kb on + strand, within Synpcc7942_1568 at 1626.518 kb on + strand, within Synpcc7942_1568 at 1626.518 kb on + strand, within Synpcc7942_1568 at 1626.518 kb on + strand, within Synpcc7942_1568 at 1626.518 kb on + strand, within Synpcc7942_1568 at 1626.518 kb on + strand, within Synpcc7942_1568 at 1626.518 kb on + strand, within Synpcc7942_1568 at 1626.518 kb on + strand, within Synpcc7942_1568 at 1626.518 kb on + strand, within Synpcc7942_1568 at 1626.518 kb on + strand, within Synpcc7942_1568 at 1626.526 kb on - strand, within Synpcc7942_1568 at 1626.526 kb on - strand, within Synpcc7942_1568 at 1626.526 kb on - strand, within Synpcc7942_1568 at 1626.526 kb on - strand, within Synpcc7942_1568 at 1626.526 kb on - strand, within Synpcc7942_1568 at 1626.526 kb on - strand, within Synpcc7942_1568 at 1626.526 kb on - strand, within Synpcc7942_1568 at 1626.526 kb on - strand, within Synpcc7942_1568 at 1626.526 kb on - strand, within Synpcc7942_1568 at 1626.526 kb on - strand, within Synpcc7942_1568 at 1626.526 kb on - strand, within Synpcc7942_1568 at 1626.526 kb on - strand, within Synpcc7942_1568 at 1626.526 kb on - strand, within Synpcc7942_1568 at 1626.607 kb on + strand at 1626.649 kb on + strand at 1626.651 kb on + strand at 1626.657 kb on + strand at 1626.659 kb on - strand at 1626.681 kb on - strand at 1626.708 kb on + strand, within Synpcc7942_1569 at 1626.716 kb on - strand, within Synpcc7942_1569 at 1626.764 kb on - strand, within Synpcc7942_1569 at 1626.774 kb on + strand, within Synpcc7942_1569 at 1626.774 kb on + strand, within Synpcc7942_1569 at 1626.782 kb on - strand, within Synpcc7942_1569 at 1626.782 kb on - strand, within Synpcc7942_1569 at 1626.782 kb on - strand, within Synpcc7942_1569 at 1626.782 kb on - strand, within Synpcc7942_1569 at 1626.784 kb on - strand, within Synpcc7942_1569 at 1626.806 kb on + strand, within Synpcc7942_1569 at 1626.809 kb on + strand, within Synpcc7942_1569 at 1626.913 kb on - strand, within Synpcc7942_1569 at 1626.928 kb on + strand, within Synpcc7942_1569 at 1626.946 kb on + strand, within Synpcc7942_1569 at 1626.953 kb on + strand, within Synpcc7942_1569 at 1626.999 kb on + strand, within Synpcc7942_1569
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 1,624,710 - ppk Synpcc7942_1566 0.57 +1.0 1,624,737 + ppk Synpcc7942_1566 0.59 -0.0 1,624,794 - ppk Synpcc7942_1566 0.61 +1.0 1,624,802 + ppk Synpcc7942_1566 0.62 +1.0 1,624,824 - ppk Synpcc7942_1566 0.63 +1.0 1,624,859 + ppk Synpcc7942_1566 0.64 +1.0 1,624,867 - ppk Synpcc7942_1566 0.65 +1.0 1,624,867 - ppk Synpcc7942_1566 0.65 -0.0 1,624,874 - ppk Synpcc7942_1566 0.65 -1.3 1,624,896 - ppk Synpcc7942_1566 0.66 +1.0 1,624,898 + ppk Synpcc7942_1566 0.66 +1.0 1,624,940 + ppk Synpcc7942_1566 0.68 -2.2 1,624,974 - ppk Synpcc7942_1566 0.69 +1.0 1,624,989 - ppk Synpcc7942_1566 0.70 +1.0 1,624,991 + ppk Synpcc7942_1566 0.70 +1.0 1,624,999 - ppk Synpcc7942_1566 0.71 +1.0 1,625,117 - -0.0 1,625,229 - ppk Synpcc7942_1566 0.81 -1.8 1,625,238 - ppk Synpcc7942_1566 0.81 -0.6 1,625,240 + ppk Synpcc7942_1566 0.82 +2.0 1,625,286 + ppk Synpcc7942_1566 0.84 -0.0 1,625,286 - ppk Synpcc7942_1566 0.84 -0.0 1,625,319 - ppk Synpcc7942_1566 0.85 -0.6 1,625,428 + -0.9 1,625,429 - +1.0 1,625,433 + -2.0 1,625,434 - -1.3 1,625,492 - +1.0 1,625,550 + +1.0 1,625,553 + +1.0 1,625,556 - -1.6 1,625,563 - +0.2 1,625,602 - -0.0 1,625,630 + -0.8 1,625,638 - +1.7 1,625,651 + -1.2 1,625,656 + -1.3 1,625,656 + -1.9 1,625,664 - -1.2 1,625,672 - -2.7 1,625,680 + +2.0 1,625,771 - Synpcc7942_1567 0.22 +0.6 1,625,795 - Synpcc7942_1567 0.29 -0.9 1,625,821 + Synpcc7942_1567 0.37 -1.1 1,625,825 + Synpcc7942_1567 0.39 -2.6 1,625,842 + Synpcc7942_1567 0.44 -0.6 1,625,850 - Synpcc7942_1567 0.47 -2.5 1,625,850 - Synpcc7942_1567 0.47 +2.6 1,625,968 - Synpcc7942_1567 0.84 -1.1 1,626,019 - -0.3 1,626,049 + -0.0 1,626,091 - +1.0 1,626,091 - -2.1 1,626,092 + +3.3 1,626,092 + -0.7 1,626,092 + -0.6 1,626,100 - -1.1 1,626,100 - -0.4 1,626,100 - +0.3 1,626,100 - -1.8 1,626,135 - -0.4 1,626,135 - +0.2 1,626,152 + +0.4 1,626,160 - +1.4 1,626,160 - -1.6 1,626,179 - -0.3 1,626,204 + -1.0 1,626,227 - +1.6 1,626,251 + -0.3 1,626,251 + -2.5 1,626,259 - -1.0 1,626,264 - +1.0 1,626,276 + -0.9 1,626,305 + -2.2 1,626,318 - +1.0 1,626,323 + -0.3 1,626,366 - -0.0 1,626,391 + Synpcc7942_1568 0.14 +0.1 1,626,391 + Synpcc7942_1568 0.14 +0.4 1,626,394 - Synpcc7942_1568 0.15 -1.6 1,626,399 - Synpcc7942_1568 0.17 -0.5 1,626,399 - Synpcc7942_1568 0.17 +2.3 1,626,403 - Synpcc7942_1568 0.19 +1.0 1,626,518 + Synpcc7942_1568 0.67 -1.1 1,626,518 + Synpcc7942_1568 0.67 +0.1 1,626,518 + Synpcc7942_1568 0.67 -0.0 1,626,518 + Synpcc7942_1568 0.67 +1.0 1,626,518 + Synpcc7942_1568 0.67 -0.3 1,626,518 + Synpcc7942_1568 0.67 +1.0 1,626,518 + Synpcc7942_1568 0.67 +0.2 1,626,518 + Synpcc7942_1568 0.67 +0.7 1,626,518 + Synpcc7942_1568 0.67 -1.1 1,626,518 + Synpcc7942_1568 0.67 -1.7 1,626,526 - Synpcc7942_1568 0.70 -0.3 1,626,526 - Synpcc7942_1568 0.70 -0.9 1,626,526 - Synpcc7942_1568 0.70 -1.3 1,626,526 - Synpcc7942_1568 0.70 -0.5 1,626,526 - Synpcc7942_1568 0.70 -2.0 1,626,526 - Synpcc7942_1568 0.70 -2.2 1,626,526 - Synpcc7942_1568 0.70 +0.4 1,626,526 - Synpcc7942_1568 0.70 +3.0 1,626,526 - Synpcc7942_1568 0.70 -0.0 1,626,526 - Synpcc7942_1568 0.70 +1.0 1,626,526 - Synpcc7942_1568 0.70 -0.0 1,626,526 - Synpcc7942_1568 0.70 -0.8 1,626,526 - Synpcc7942_1568 0.70 +1.0 1,626,607 + +0.4 1,626,649 + +2.1 1,626,651 + -0.4 1,626,657 + -0.7 1,626,659 - -0.6 1,626,681 - -0.1 1,626,708 + Synpcc7942_1569 0.12 -1.3 1,626,716 - Synpcc7942_1569 0.13 -1.0 1,626,764 - Synpcc7942_1569 0.24 -0.9 1,626,774 + Synpcc7942_1569 0.26 +1.0 1,626,774 + Synpcc7942_1569 0.26 -1.0 1,626,782 - Synpcc7942_1569 0.28 +4.3 1,626,782 - Synpcc7942_1569 0.28 +1.0 1,626,782 - Synpcc7942_1569 0.28 +1.0 1,626,782 - Synpcc7942_1569 0.28 +0.6 1,626,784 - Synpcc7942_1569 0.28 +1.0 1,626,806 + Synpcc7942_1569 0.33 -1.1 1,626,809 + Synpcc7942_1569 0.34 -2.3 1,626,913 - Synpcc7942_1569 0.56 -0.2 1,626,928 + Synpcc7942_1569 0.59 -3.3 1,626,946 + Synpcc7942_1569 0.63 +0.2 1,626,953 + Synpcc7942_1569 0.65 -0.0 1,626,999 + Synpcc7942_1569 0.75 +1.6
Or see this region's nucleotide sequence