Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1537

Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Biofilm in Fresh BG11R in Flasks with Spin rep 1
1,595,690	+	rbcX	Synpcc7942_1535	0.44	-0.4
1,595,700	-	rbcX	Synpcc7942_1535	0.47	-0.3
1,595,709	+	rbcX	Synpcc7942_1535	0.49	+1.0
1,595,722	+	rbcX	Synpcc7942_1535	0.51	+0.7
1,595,722	+	rbcX	Synpcc7942_1535	0.51	-1.2
1,595,730	-	rbcX	Synpcc7942_1535	0.53	-1.7
1,595,749	-	rbcX	Synpcc7942_1535	0.57	-0.7
1,595,791	+	rbcX	Synpcc7942_1535	0.66	+0.1
1,595,801	-	rbcX	Synpcc7942_1535	0.69	+1.0
1,595,844	+	rbcX	Synpcc7942_1535	0.78	-0.9
1,595,850	+	rbcX	Synpcc7942_1535	0.79	+1.4
1,595,911	-				-0.0
1,595,915	-				+1.0
1,595,971	+				-0.6
1,596,007	+	gat	Synpcc7942_1536	0.11	-1.3
1,596,019	+	gat	Synpcc7942_1536	0.12	-0.8
1,596,019	+	gat	Synpcc7942_1536	0.12	+2.1
1,596,027	-	gat	Synpcc7942_1536	0.14	+1.7
1,596,080	+	gat	Synpcc7942_1536	0.21	-0.6
1,596,095	+	gat	Synpcc7942_1536	0.24	-0.3
1,596,121	+	gat	Synpcc7942_1536	0.27	-1.6
1,596,129	-	gat	Synpcc7942_1536	0.29	+0.4
1,596,221	+	gat	Synpcc7942_1536	0.42	+1.0
1,596,221	+				+2.6
1,596,222	-	gat	Synpcc7942_1536	0.42	-5.1
1,596,222	-	gat	Synpcc7942_1536	0.42	-0.8
1,596,222	-	gat	Synpcc7942_1536	0.42	+1.3
1,596,273	+	gat	Synpcc7942_1536	0.50	-0.0
1,596,286	-	gat	Synpcc7942_1536	0.52	-1.0
1,596,343	+	gat	Synpcc7942_1536	0.60	+0.5
1,596,377	-	gat	Synpcc7942_1536	0.65	-0.1
1,596,421	-	gat	Synpcc7942_1536	0.72	+1.6
1,596,460	+	gat	Synpcc7942_1536	0.77	-1.0
1,596,460	+	gat	Synpcc7942_1536	0.77	-1.2
1,596,473	+	gat	Synpcc7942_1536	0.79	+2.0
1,596,482	+	gat	Synpcc7942_1536	0.80	-1.7
1,596,490	-	gat	Synpcc7942_1536	0.82	-1.0
1,596,509	-	gat	Synpcc7942_1536	0.84	+0.7
1,596,524	-	gat	Synpcc7942_1536	0.87	-1.4
1,596,531	+	gat	Synpcc7942_1536	0.88	+0.1
1,596,531	+	gat	Synpcc7942_1536	0.88	+2.6
1,596,531	+	gat	Synpcc7942_1536	0.88	-1.8
1,596,531	+	gat	Synpcc7942_1536	0.88	+1.0
1,596,531	+	gat	Synpcc7942_1536	0.88	+2.0
1,596,535	+	gat	Synpcc7942_1536	0.88	-0.8
1,596,538	-	gat	Synpcc7942_1536	0.89	-0.2
1,596,539	-	gat	Synpcc7942_1536	0.89	-0.0
1,596,539	-	gat	Synpcc7942_1536	0.89	-1.0
1,596,539	-	gat	Synpcc7942_1536	0.89	-1.0
1,596,627	+				-0.0
1,596,645	+				-0.3
1,596,651	+				+1.0
1,596,659	-				-1.2
1,596,678	-				-0.3
1,596,704	+	stbB	Synpcc7942_1537	0.17	-1.2
1,596,719	+	stbB	Synpcc7942_1537	0.24	-1.8
1,596,727	-	stbB	Synpcc7942_1537	0.28	+2.6
1,596,742	+	stbB	Synpcc7942_1537	0.35	+1.0
1,596,743	+	stbB	Synpcc7942_1537	0.36	-1.1
1,596,871	+				-1.6
1,596,879	-				-1.7
1,596,879	-				-1.1
1,596,879	-				-0.3
1,596,887	-				-0.2
1,596,897	-				-1.3
1,597,002	-				-0.3
1,597,016	+		Synpcc7942_1538	0.12	-0.2
1,597,086	+		Synpcc7942_1538	0.30	-1.2
1,597,225	+		Synpcc7942_1538	0.64	+0.9
1,597,225	+		Synpcc7942_1538	0.64	+0.6
1,597,233	-		Synpcc7942_1538	0.66	+0.4
1,597,276	+		Synpcc7942_1538	0.77	+1.0
1,597,389	+				-2.0
1,597,458	+				+2.0
1,597,466	+				-0.6
1,597,515	+				+2.0
1,597,515	+				-0.3
1,597,537	-				-2.3
1,597,539	+				+1.5
1,597,547	-		Synpcc7942_1539	0.10	-1.1
1,597,551	+		Synpcc7942_1539	0.12	+1.0
1,597,585	-		Synpcc7942_1539	0.23	-1.3
1,597,587	+		Synpcc7942_1539	0.23	-0.0
1,597,587	+		Synpcc7942_1539	0.23	-1.2
1,597,595	-		Synpcc7942_1539	0.26	-2.8
1,597,595	-		Synpcc7942_1539	0.26	-0.6
1,597,598	+		Synpcc7942_1539	0.27	+1.0
1,597,635	+		Synpcc7942_1539	0.39	+0.1
1,597,640	+		Synpcc7942_1539	0.41	-0.0
1,597,641	-		Synpcc7942_1539	0.41	-3.1
1,597,641	-		Synpcc7942_1539	0.41	+1.0
1,597,643	+		Synpcc7942_1539	0.42	-2.3
1,597,645	+		Synpcc7942_1539	0.43	-0.8
1,597,645	+		Synpcc7942_1539	0.43	-0.4
1,597,647	+		Synpcc7942_1539	0.43	-1.6
1,597,647	+		Synpcc7942_1539	0.43	-0.7
1,597,651	-		Synpcc7942_1539	0.45	-3.6
1,597,651	-		Synpcc7942_1539	0.45	-1.4
1,597,653	-		Synpcc7942_1539	0.45	-1.2
1,597,655	-		Synpcc7942_1539	0.46	+0.2
1,597,724	-		Synpcc7942_1539	0.69	-1.4
1,597,724	-		Synpcc7942_1539	0.69	-2.4
1,597,846	+				-3.0
1,597,846	+				+0.6