Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argC and Synpcc7942_1434 are separated by 213 nucleotides Synpcc7942_1434 and menD are separated by 120 nucleotides
Synpcc7942_1433: argC - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,486,983 to 1,488,041
argC
Synpcc7942_1434: Synpcc7942_1434 - hypothetical protein, at 1,488,255 to 1,488,854
_1434
Synpcc7942_1435: menD - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase, at 1,488,975 to 1,490,723
menD
Position (kb)
1488
1489 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1488.034 kb on + strand at 1488.035 kb on + strand at 1488.035 kb on + strand at 1488.035 kb on + strand at 1488.057 kb on + strand at 1488.057 kb on + strand at 1488.057 kb on + strand at 1488.057 kb on + strand at 1488.065 kb on - strand at 1488.065 kb on - strand at 1488.065 kb on - strand at 1488.068 kb on - strand at 1488.133 kb on - strand at 1488.136 kb on + strand at 1488.161 kb on + strand at 1488.164 kb on - strand at 1488.167 kb on - strand at 1488.169 kb on - strand at 1488.276 kb on - strand at 1488.355 kb on + strand, within Synpcc7942_1434 at 1488.395 kb on - strand, within Synpcc7942_1434 at 1488.434 kb on + strand, within Synpcc7942_1434 at 1488.448 kb on - strand, within Synpcc7942_1434 at 1488.461 kb on - strand, within Synpcc7942_1434 at 1488.484 kb on - strand, within Synpcc7942_1434 at 1488.500 kb on + strand, within Synpcc7942_1434 at 1488.508 kb on - strand, within Synpcc7942_1434 at 1488.533 kb on + strand, within Synpcc7942_1434 at 1488.581 kb on + strand, within Synpcc7942_1434 at 1488.581 kb on + strand, within Synpcc7942_1434 at 1488.584 kb on - strand, within Synpcc7942_1434 at 1488.589 kb on - strand, within Synpcc7942_1434 at 1488.625 kb on - strand, within Synpcc7942_1434 at 1488.648 kb on + strand, within Synpcc7942_1434 at 1488.654 kb on - strand at 1488.656 kb on - strand, within Synpcc7942_1434 at 1488.688 kb on - strand, within Synpcc7942_1434 at 1488.707 kb on - strand, within Synpcc7942_1434 at 1488.712 kb on - strand, within Synpcc7942_1434 at 1488.742 kb on - strand, within Synpcc7942_1434 at 1488.795 kb on - strand at 1488.858 kb on + strand at 1488.901 kb on - strand at 1488.983 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 1,488,034 + +2.1 1,488,035 + -0.6 1,488,035 + +3.6 1,488,035 + +1.0 1,488,057 + -0.6 1,488,057 + -0.6 1,488,057 + +1.6 1,488,057 + -3.5 1,488,065 - -0.2 1,488,065 - +1.7 1,488,065 - +0.3 1,488,068 - -0.1 1,488,133 - -0.8 1,488,136 + -0.7 1,488,161 + -0.1 1,488,164 - -0.9 1,488,167 - -1.9 1,488,169 - +0.0 1,488,276 - -2.7 1,488,355 + Synpcc7942_1434 0.17 +0.0 1,488,395 - Synpcc7942_1434 0.23 -2.4 1,488,434 + Synpcc7942_1434 0.30 +0.6 1,488,448 - Synpcc7942_1434 0.32 -1.8 1,488,461 - Synpcc7942_1434 0.34 -2.3 1,488,484 - Synpcc7942_1434 0.38 -2.1 1,488,500 + Synpcc7942_1434 0.41 -1.6 1,488,508 - Synpcc7942_1434 0.42 +0.0 1,488,533 + Synpcc7942_1434 0.46 +3.0 1,488,581 + Synpcc7942_1434 0.54 -0.6 1,488,581 + Synpcc7942_1434 0.54 -4.2 1,488,584 - Synpcc7942_1434 0.55 -0.7 1,488,589 - Synpcc7942_1434 0.56 -1.5 1,488,625 - Synpcc7942_1434 0.62 +2.7 1,488,648 + Synpcc7942_1434 0.66 -2.2 1,488,654 - -1.6 1,488,656 - Synpcc7942_1434 0.67 +1.0 1,488,688 - Synpcc7942_1434 0.72 -1.3 1,488,707 - Synpcc7942_1434 0.75 +0.6 1,488,712 - Synpcc7942_1434 0.76 +0.3 1,488,742 - Synpcc7942_1434 0.81 -0.9 1,488,795 - -0.6 1,488,858 + -0.2 1,488,901 - -2.1 1,488,983 + -1.1
Or see this region's nucleotide sequence