Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1039

Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Biofilm in Fresh BG11R in Flasks with Spin rep 1
1,053,370	+		Synpcc7942_1038	0.18	-1.0
1,053,397	+		Synpcc7942_1038	0.23	+1.0
1,053,405	-		Synpcc7942_1038	0.24	-0.6
1,053,464	+		Synpcc7942_1038	0.34	+0.8
1,053,472	-		Synpcc7942_1038	0.35	+0.4
1,053,515	-		Synpcc7942_1038	0.43	-0.7
1,053,524	-		Synpcc7942_1038	0.44	-1.2
1,053,529	-		Synpcc7942_1038	0.45	-0.0
1,053,539	+		Synpcc7942_1038	0.47	+1.7
1,053,576	-		Synpcc7942_1038	0.53	-3.5
1,053,586	-		Synpcc7942_1038	0.55	-0.6
1,053,659	+		Synpcc7942_1038	0.67	+2.7
1,053,659	+		Synpcc7942_1038	0.67	-1.6
1,053,706	+		Synpcc7942_1038	0.75	-0.2
1,053,729	+		Synpcc7942_1038	0.79	+0.5
1,053,729	+		Synpcc7942_1038	0.79	-0.7
1,053,736	-		Synpcc7942_1038	0.80	+1.4
1,053,744	-		Synpcc7942_1038	0.82	-0.2
1,053,804	-				+1.1
1,053,806	+				-0.0
1,053,846	+				+1.0
1,053,853	+				+0.4
1,053,853	+				-1.1
1,053,853	+				-1.2
1,053,853	+				-0.0
1,053,853	+				-0.0
1,053,854	+				-1.4
1,053,861	-				-0.6
1,053,865	+				+0.1
1,053,875	+				+1.0
1,053,875	+				-2.0
1,053,875	+				-1.0
1,053,883	-				-1.3
1,053,896	-				+0.1
1,053,923	-				-1.5
1,053,930	-		Synpcc7942_1039	0.11	-2.2
1,053,995	+		Synpcc7942_1039	0.25	-1.9
1,054,135	+		Synpcc7942_1039	0.54	-0.6
1,054,143	-		Synpcc7942_1039	0.56	+2.3
1,054,187	-		Synpcc7942_1039	0.65	-1.3
1,054,236	-		Synpcc7942_1039	0.75	+1.4
1,054,328	+				-0.0
1,054,339	-				-1.2
1,054,346	+				-1.2
1,054,348	+				-0.5
1,054,354	-				-0.7
1,054,359	-				+1.0
1,054,374	+				-0.4
1,054,389	-				-1.2
1,054,391	+				-1.4
1,054,402	+				-1.1
1,054,418	+				+0.7
1,054,431	-				-0.6
1,054,442	+				-1.6
1,054,443	+				-0.8
1,054,443	+				-0.9
1,054,451	-				-0.0
1,054,451	-				-0.3
1,054,477	+				-0.3
1,054,480	+				+1.4
1,054,492	+				-0.0
1,054,492	+				-0.2
1,054,500	-				+0.8
1,054,500	-				+1.0
1,054,508	-				-0.8
1,054,513	-				+1.0
1,054,532	-				+2.2
1,054,568	-				+1.0
1,054,588	-				-1.3
1,054,605	+				+1.0
1,054,613	-				-0.6
1,054,658	+				-1.7
1,054,661	-				-0.5
1,054,661	-				+1.0
1,054,666	+				-0.3
1,054,673	+				-0.6
1,054,674	+				-1.0
1,054,685	+				+2.2
1,054,685	+				-1.1
1,054,690	+				-2.4
1,054,693	-				-0.5
1,054,694	-				+1.8
1,054,699	+				-1.7
1,054,708	+				+0.0
1,054,739	-				+1.0
1,054,739	-				-0.6
1,054,786	-		Synpcc7942_1040	0.11	-0.7
1,054,786	-		Synpcc7942_1040	0.11	+0.5
1,054,793	+		Synpcc7942_1040	0.13	+1.1
1,054,793	+		Synpcc7942_1040	0.13	+2.0
1,054,799	+		Synpcc7942_1040	0.14	-0.4
1,054,799	-		Synpcc7942_1040	0.14	+1.8
1,054,818	+		Synpcc7942_1040	0.17	+0.5
1,054,818	+		Synpcc7942_1040	0.17	-0.6
1,054,818	+		Synpcc7942_1040	0.17	-1.9
1,054,866	-		Synpcc7942_1040	0.26	-1.3
1,054,866	-		Synpcc7942_1040	0.26	-0.6
1,054,870	+		Synpcc7942_1040	0.27	+0.6
1,054,870	+		Synpcc7942_1040	0.27	-1.3
1,054,870	+		Synpcc7942_1040	0.27	-1.0
1,054,878	-		Synpcc7942_1040	0.28	+2.0
1,054,939	-		Synpcc7942_1040	0.39	-1.5
1,054,941	-		Synpcc7942_1040	0.39	-0.1
1,054,973	-		Synpcc7942_1040	0.45	-0.3
1,055,002	-		Synpcc7942_1040	0.50	-1.2
1,055,002	-		Synpcc7942_1040	0.50	+5.1
1,055,009	+		Synpcc7942_1040	0.51	-1.9
1,055,097	+		Synpcc7942_1040	0.67	-0.8
1,055,164	-		Synpcc7942_1040	0.79	-0.0
1,055,176	+		Synpcc7942_1040	0.81	+1.0
1,055,201	-		Synpcc7942_1040	0.86	-1.1
1,055,201	-		Synpcc7942_1040	0.86	+0.6
1,055,228	-				-0.9
1,055,243	-				-1.2
1,055,243	-				+0.2
1,055,243	-				+1.0
1,055,243	-				-1.2
1,055,272	+				+0.5
1,055,280	-				+0.7
1,055,304	-				-1.2
1,055,307	+				+2.0
1,055,313	+				-0.6
1,055,318	+				+2.6