Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0869 and Synpcc7942_0870 are separated by 33 nucleotides Synpcc7942_0870 and Synpcc7942_0871 overlap by 8 nucleotides Synpcc7942_0871 and Synpcc7942_0872 are separated by 31 nucleotides Synpcc7942_0872 and Synpcc7942_0873 are separated by 167 nucleotides
Synpcc7942_0869: Synpcc7942_0869 - hypothetical protein, at 871,262 to 871,852
_0869
Synpcc7942_0870: Synpcc7942_0870 - hypothetical protein, at 871,886 to 872,113
_0870
Synpcc7942_0871: Synpcc7942_0871 - hypothetical protein, at 872,106 to 872,330
_0871
Synpcc7942_0872: Synpcc7942_0872 - hypothetical protein, at 872,362 to 872,940
_0872
Synpcc7942_0873: Synpcc7942_0873 - hypothetical protein, at 873,108 to 874,196
_0873
Position (kb) 872
873 Strain fitness (log2 ratio) -2
-1
0
1
2 at 871.481 kb on - strand, within Synpcc7942_0869 at 871.558 kb on - strand, within Synpcc7942_0869 at 872.352 kb on - strand at 872.410 kb on - strand at 872.423 kb on + strand, within Synpcc7942_0872 at 872.424 kb on - strand, within Synpcc7942_0872 at 872.474 kb on - strand, within Synpcc7942_0872 at 872.537 kb on + strand, within Synpcc7942_0872 at 872.576 kb on + strand, within Synpcc7942_0872 at 872.576 kb on + strand, within Synpcc7942_0872 at 872.576 kb on + strand, within Synpcc7942_0872 at 872.576 kb on + strand, within Synpcc7942_0872 at 872.584 kb on - strand, within Synpcc7942_0872 at 872.584 kb on - strand, within Synpcc7942_0872 at 872.688 kb on + strand, within Synpcc7942_0872 at 872.688 kb on + strand, within Synpcc7942_0872 at 872.696 kb on - strand, within Synpcc7942_0872 at 872.763 kb on + strand, within Synpcc7942_0872 at 872.788 kb on + strand, within Synpcc7942_0872 at 872.807 kb on + strand, within Synpcc7942_0872 at 872.921 kb on - strand at 872.934 kb on - strand at 873.041 kb on - strand at 873.186 kb on + strand at 873.225 kb on + strand, within Synpcc7942_0873 at 873.227 kb on + strand, within Synpcc7942_0873 at 873.279 kb on - strand, within Synpcc7942_0873 at 873.289 kb on - strand, within Synpcc7942_0873 at 873.459 kb on - strand, within Synpcc7942_0873 at 873.592 kb on + strand, within Synpcc7942_0873 at 873.615 kb on + strand, within Synpcc7942_0873 at 873.703 kb on + strand, within Synpcc7942_0873 at 873.719 kb on + strand, within Synpcc7942_0873 at 873.729 kb on - strand, within Synpcc7942_0873 at 873.784 kb on - strand, within Synpcc7942_0873
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 871,481 - Synpcc7942_0869 0.37 +1.0 871,558 - Synpcc7942_0869 0.50 +1.0 872,352 - -1.3 872,410 - +0.4 872,423 + Synpcc7942_0872 0.11 -0.5 872,424 - Synpcc7942_0872 0.11 +1.0 872,474 - Synpcc7942_0872 0.19 +2.0 872,537 + Synpcc7942_0872 0.30 +1.0 872,576 + Synpcc7942_0872 0.37 -1.0 872,576 + Synpcc7942_0872 0.37 +1.0 872,576 + Synpcc7942_0872 0.37 -1.0 872,576 + Synpcc7942_0872 0.37 -1.4 872,584 - Synpcc7942_0872 0.38 -2.7 872,584 - Synpcc7942_0872 0.38 -1.5 872,688 + Synpcc7942_0872 0.56 -0.6 872,688 + Synpcc7942_0872 0.56 +1.0 872,696 - Synpcc7942_0872 0.58 -2.0 872,763 + Synpcc7942_0872 0.69 -2.4 872,788 + Synpcc7942_0872 0.74 -1.2 872,807 + Synpcc7942_0872 0.77 -0.6 872,921 - -1.6 872,934 - +0.5 873,041 - -2.5 873,186 + +0.9 873,225 + Synpcc7942_0873 0.11 -1.0 873,227 + Synpcc7942_0873 0.11 -0.4 873,279 - Synpcc7942_0873 0.16 -0.7 873,289 - Synpcc7942_0873 0.17 -0.8 873,459 - Synpcc7942_0873 0.32 -0.6 873,592 + Synpcc7942_0873 0.44 +1.0 873,615 + Synpcc7942_0873 0.47 -1.1 873,703 + Synpcc7942_0873 0.55 +0.2 873,719 + Synpcc7942_0873 0.56 +0.2 873,729 - Synpcc7942_0873 0.57 +1.5 873,784 - Synpcc7942_0873 0.62 -1.1
Or see this region's nucleotide sequence