Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gor and Synpcc7942_0843 are separated by 98 nucleotides Synpcc7942_0843 and Synpcc7942_0844 are separated by 163 nucleotides Synpcc7942_0844 and Synpcc7942_0845 are separated by 63 nucleotides Synpcc7942_0845 and Synpcc7942_0846 are separated by 183 nucleotides
Synpcc7942_0842: gor - glutathione reductase, at 837,065 to 838,405
gor
Synpcc7942_0843: Synpcc7942_0843 - hypothetical protein, at 838,504 to 838,935
_0843
Synpcc7942_0844: Synpcc7942_0844 - Phosphoesterase PHP-like, at 839,099 to 839,809
_0844
Synpcc7942_0845: Synpcc7942_0845 - hypothetical protein, at 839,873 to 840,079
_0845
Synpcc7942_0846: Synpcc7942_0846 - hypothetical protein, at 840,263 to 841,081
_0846
Position (kb) 839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 838.181 kb on - strand, within gor at 838.189 kb on - strand, within gor at 838.203 kb on - strand, within gor at 838.204 kb on - strand, within gor at 838.204 kb on - strand, within gor at 838.238 kb on + strand, within gor at 838.256 kb on + strand, within gor at 838.414 kb on + strand at 838.415 kb on - strand at 838.450 kb on + strand at 838.473 kb on + strand at 838.473 kb on + strand at 838.475 kb on - strand at 838.482 kb on + strand at 838.485 kb on - strand at 838.485 kb on - strand at 838.539 kb on + strand at 838.540 kb on + strand at 838.542 kb on - strand at 838.633 kb on - strand, within Synpcc7942_0843 at 838.633 kb on - strand, within Synpcc7942_0843 at 838.648 kb on + strand, within Synpcc7942_0843 at 838.651 kb on - strand, within Synpcc7942_0843 at 838.656 kb on - strand, within Synpcc7942_0843 at 838.656 kb on - strand, within Synpcc7942_0843 at 838.666 kb on + strand at 838.676 kb on + strand, within Synpcc7942_0843 at 838.676 kb on + strand, within Synpcc7942_0843 at 838.684 kb on - strand, within Synpcc7942_0843 at 838.684 kb on - strand, within Synpcc7942_0843 at 838.687 kb on + strand, within Synpcc7942_0843 at 838.695 kb on - strand, within Synpcc7942_0843 at 838.717 kb on - strand, within Synpcc7942_0843 at 838.757 kb on - strand, within Synpcc7942_0843 at 838.757 kb on - strand, within Synpcc7942_0843 at 838.757 kb on - strand, within Synpcc7942_0843 at 838.785 kb on - strand, within Synpcc7942_0843 at 838.797 kb on - strand, within Synpcc7942_0843 at 838.833 kb on - strand, within Synpcc7942_0843 at 838.848 kb on + strand, within Synpcc7942_0843 at 838.863 kb on - strand, within Synpcc7942_0843 at 838.895 kb on - strand at 838.985 kb on + strand at 838.996 kb on + strand at 839.002 kb on - strand at 839.005 kb on + strand at 839.005 kb on + strand at 839.026 kb on - strand at 839.028 kb on + strand at 839.084 kb on - strand at 839.094 kb on - strand at 839.124 kb on - strand at 839.194 kb on + strand, within Synpcc7942_0844 at 839.194 kb on + strand, within Synpcc7942_0844 at 839.202 kb on - strand, within Synpcc7942_0844 at 839.202 kb on - strand, within Synpcc7942_0844 at 839.202 kb on - strand, within Synpcc7942_0844 at 839.222 kb on - strand, within Synpcc7942_0844 at 839.222 kb on - strand, within Synpcc7942_0844 at 839.222 kb on - strand, within Synpcc7942_0844 at 839.222 kb on - strand, within Synpcc7942_0844 at 839.248 kb on - strand, within Synpcc7942_0844 at 839.252 kb on + strand, within Synpcc7942_0844 at 839.309 kb on + strand, within Synpcc7942_0844 at 839.340 kb on - strand, within Synpcc7942_0844 at 839.341 kb on - strand, within Synpcc7942_0844 at 839.341 kb on - strand, within Synpcc7942_0844 at 839.400 kb on - strand, within Synpcc7942_0844 at 839.401 kb on + strand at 839.401 kb on + strand, within Synpcc7942_0844 at 839.406 kb on + strand, within Synpcc7942_0844 at 839.409 kb on - strand, within Synpcc7942_0844 at 839.414 kb on - strand at 839.414 kb on - strand, within Synpcc7942_0844 at 839.453 kb on + strand, within Synpcc7942_0844 at 839.468 kb on + strand, within Synpcc7942_0844 at 839.470 kb on + strand, within Synpcc7942_0844 at 839.481 kb on + strand, within Synpcc7942_0844 at 839.499 kb on + strand, within Synpcc7942_0844 at 839.504 kb on + strand, within Synpcc7942_0844 at 839.514 kb on - strand, within Synpcc7942_0844 at 839.518 kb on - strand, within Synpcc7942_0844 at 839.576 kb on + strand, within Synpcc7942_0844 at 839.584 kb on - strand, within Synpcc7942_0844 at 839.602 kb on + strand, within Synpcc7942_0844 at 839.620 kb on - strand, within Synpcc7942_0844 at 839.630 kb on + strand, within Synpcc7942_0844 at 839.644 kb on + strand, within Synpcc7942_0844 at 839.654 kb on - strand, within Synpcc7942_0844 at 839.679 kb on + strand, within Synpcc7942_0844 at 839.747 kb on - strand at 839.747 kb on - strand at 839.815 kb on + strand at 839.823 kb on - strand at 839.830 kb on + strand at 839.830 kb on + strand at 839.830 kb on + strand at 839.838 kb on - strand at 839.838 kb on - strand at 839.856 kb on - strand at 839.870 kb on + strand at 839.870 kb on + strand at 839.870 kb on + strand at 839.878 kb on - strand at 839.878 kb on - strand at 839.888 kb on - strand at 839.888 kb on - strand at 839.900 kb on + strand, within Synpcc7942_0845 at 839.924 kb on - strand, within Synpcc7942_0845 at 839.970 kb on - strand, within Synpcc7942_0845 at 839.972 kb on + strand, within Synpcc7942_0845 at 839.990 kb on + strand, within Synpcc7942_0845 at 839.998 kb on - strand, within Synpcc7942_0845 at 840.008 kb on - strand, within Synpcc7942_0845 at 840.008 kb on - strand, within Synpcc7942_0845 at 840.024 kb on + strand, within Synpcc7942_0845 at 840.024 kb on + strand, within Synpcc7942_0845 at 840.029 kb on + strand, within Synpcc7942_0845 at 840.095 kb on + strand at 840.114 kb on + strand at 840.131 kb on + strand at 840.137 kb on + strand at 840.137 kb on + strand at 840.137 kb on + strand at 840.145 kb on - strand at 840.145 kb on - strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.171 kb on + strand at 840.186 kb on - strand at 840.231 kb on + strand at 840.238 kb on - strand at 840.288 kb on - strand at 840.314 kb on - strand at 840.317 kb on + strand at 840.322 kb on - strand at 840.326 kb on + strand at 840.340 kb on + strand at 840.369 kb on - strand, within Synpcc7942_0846 at 840.386 kb on + strand, within Synpcc7942_0846 at 840.389 kb on - strand, within Synpcc7942_0846 at 840.403 kb on - strand, within Synpcc7942_0846 at 840.436 kb on + strand, within Synpcc7942_0846 at 840.439 kb on - strand, within Synpcc7942_0846 at 840.462 kb on + strand, within Synpcc7942_0846 at 840.462 kb on + strand, within Synpcc7942_0846 at 840.462 kb on + strand, within Synpcc7942_0846 at 840.482 kb on + strand, within Synpcc7942_0846 at 840.483 kb on + strand, within Synpcc7942_0846 at 840.483 kb on + strand, within Synpcc7942_0846 at 840.483 kb on + strand, within Synpcc7942_0846 at 840.491 kb on - strand, within Synpcc7942_0846 at 840.491 kb on - strand, within Synpcc7942_0846 at 840.491 kb on - strand, within Synpcc7942_0846 at 840.491 kb on - strand, within Synpcc7942_0846 at 840.509 kb on - strand at 840.509 kb on - strand, within Synpcc7942_0846 at 840.511 kb on - strand, within Synpcc7942_0846 at 840.528 kb on + strand, within Synpcc7942_0846 at 840.553 kb on - strand, within Synpcc7942_0846 at 840.572 kb on + strand, within Synpcc7942_0846 at 840.572 kb on + strand, within Synpcc7942_0846 at 840.593 kb on + strand, within Synpcc7942_0846 at 840.601 kb on + strand, within Synpcc7942_0846 at 840.603 kb on + strand, within Synpcc7942_0846 at 840.619 kb on - strand, within Synpcc7942_0846 at 840.628 kb on - strand, within Synpcc7942_0846 at 840.634 kb on + strand, within Synpcc7942_0846 at 840.645 kb on - strand, within Synpcc7942_0846 at 840.655 kb on - strand, within Synpcc7942_0846 at 840.660 kb on - strand, within Synpcc7942_0846 at 840.665 kb on - strand, within Synpcc7942_0846 at 840.665 kb on - strand, within Synpcc7942_0846 at 840.686 kb on + strand, within Synpcc7942_0846 at 840.688 kb on + strand, within Synpcc7942_0846 at 840.698 kb on + strand, within Synpcc7942_0846 at 840.707 kb on - strand, within Synpcc7942_0846 at 840.723 kb on - strand, within Synpcc7942_0846 at 840.759 kb on + strand, within Synpcc7942_0846 at 840.767 kb on - strand, within Synpcc7942_0846
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 838,181 - gor Synpcc7942_0842 0.83 -2.5 838,189 - gor Synpcc7942_0842 0.84 +0.2 838,203 - gor Synpcc7942_0842 0.85 +1.0 838,204 - gor Synpcc7942_0842 0.85 +1.7 838,204 - gor Synpcc7942_0842 0.85 +2.3 838,238 + gor Synpcc7942_0842 0.87 -0.5 838,256 + gor Synpcc7942_0842 0.89 +0.7 838,414 + -1.4 838,415 - +0.1 838,450 + -1.3 838,473 + +1.0 838,473 + -1.3 838,475 - +3.3 838,482 + -0.0 838,485 - +1.0 838,485 - -0.2 838,539 + -1.2 838,540 + -2.0 838,542 - +2.8 838,633 - Synpcc7942_0843 0.30 +1.0 838,633 - Synpcc7942_0843 0.30 +0.1 838,648 + Synpcc7942_0843 0.33 +0.7 838,651 - Synpcc7942_0843 0.34 +2.5 838,656 - Synpcc7942_0843 0.35 +2.4 838,656 - Synpcc7942_0843 0.35 +0.1 838,666 + +0.5 838,676 + Synpcc7942_0843 0.40 -2.5 838,676 + Synpcc7942_0843 0.40 +0.6 838,684 - Synpcc7942_0843 0.42 +2.3 838,684 - Synpcc7942_0843 0.42 -1.0 838,687 + Synpcc7942_0843 0.42 +1.0 838,695 - Synpcc7942_0843 0.44 -0.5 838,717 - Synpcc7942_0843 0.49 -1.2 838,757 - Synpcc7942_0843 0.59 -1.2 838,757 - Synpcc7942_0843 0.59 -2.0 838,757 - Synpcc7942_0843 0.59 -1.6 838,785 - Synpcc7942_0843 0.65 -2.8 838,797 - Synpcc7942_0843 0.68 -3.1 838,833 - Synpcc7942_0843 0.76 -0.8 838,848 + Synpcc7942_0843 0.80 -0.1 838,863 - Synpcc7942_0843 0.83 +2.8 838,895 - -0.6 838,985 + -1.8 838,996 + -1.2 839,002 - +0.6 839,005 + -0.8 839,005 + -2.3 839,026 - -1.2 839,028 + +1.2 839,084 - +1.5 839,094 - +1.5 839,124 - -2.2 839,194 + Synpcc7942_0844 0.13 -2.0 839,194 + Synpcc7942_0844 0.13 +1.7 839,202 - Synpcc7942_0844 0.14 -2.7 839,202 - Synpcc7942_0844 0.14 -0.4 839,202 - Synpcc7942_0844 0.14 -1.0 839,222 - Synpcc7942_0844 0.17 -2.5 839,222 - Synpcc7942_0844 0.17 -2.7 839,222 - Synpcc7942_0844 0.17 -0.3 839,222 - Synpcc7942_0844 0.17 -0.6 839,248 - Synpcc7942_0844 0.21 -0.9 839,252 + Synpcc7942_0844 0.22 -1.0 839,309 + Synpcc7942_0844 0.30 -1.7 839,340 - Synpcc7942_0844 0.34 +1.0 839,341 - Synpcc7942_0844 0.34 +1.5 839,341 - Synpcc7942_0844 0.34 +1.0 839,400 - Synpcc7942_0844 0.42 +0.6 839,401 + -0.3 839,401 + Synpcc7942_0844 0.42 +1.0 839,406 + Synpcc7942_0844 0.43 -0.9 839,409 - Synpcc7942_0844 0.44 -2.1 839,414 - -2.0 839,414 - Synpcc7942_0844 0.44 +1.6 839,453 + Synpcc7942_0844 0.50 +2.0 839,468 + Synpcc7942_0844 0.52 +1.0 839,470 + Synpcc7942_0844 0.52 +1.0 839,481 + Synpcc7942_0844 0.54 -1.3 839,499 + Synpcc7942_0844 0.56 -0.9 839,504 + Synpcc7942_0844 0.57 -0.6 839,514 - Synpcc7942_0844 0.58 +0.4 839,518 - Synpcc7942_0844 0.59 -0.0 839,576 + Synpcc7942_0844 0.67 +0.8 839,584 - Synpcc7942_0844 0.68 -1.0 839,602 + Synpcc7942_0844 0.71 -2.3 839,620 - Synpcc7942_0844 0.73 -1.4 839,630 + Synpcc7942_0844 0.75 +0.4 839,644 + Synpcc7942_0844 0.77 -2.0 839,654 - Synpcc7942_0844 0.78 -2.5 839,679 + Synpcc7942_0844 0.82 -1.5 839,747 - -1.4 839,747 - +2.5 839,815 + -1.2 839,823 - -1.3 839,830 + -0.6 839,830 + +1.4 839,830 + +0.4 839,838 - +0.8 839,838 - -1.2 839,856 - +1.0 839,870 + -0.5 839,870 + -1.8 839,870 + -0.0 839,878 - -0.5 839,878 - -0.6 839,888 - +0.1 839,888 - -0.4 839,900 + Synpcc7942_0845 0.13 -0.2 839,924 - Synpcc7942_0845 0.25 -0.5 839,970 - Synpcc7942_0845 0.47 -1.0 839,972 + Synpcc7942_0845 0.48 -0.9 839,990 + Synpcc7942_0845 0.57 +1.0 839,998 - Synpcc7942_0845 0.60 -2.6 840,008 - Synpcc7942_0845 0.65 -2.0 840,008 - Synpcc7942_0845 0.65 -1.6 840,024 + Synpcc7942_0845 0.73 +0.5 840,024 + Synpcc7942_0845 0.73 -1.0 840,029 + Synpcc7942_0845 0.75 -0.9 840,095 + -0.9 840,114 + -0.7 840,131 + -0.1 840,137 + -0.6 840,137 + -0.5 840,137 + -2.7 840,145 - -1.3 840,145 - -2.0 840,147 + -1.4 840,147 + +1.0 840,147 + -2.9 840,147 + -3.0 840,147 + +0.6 840,147 + -0.4 840,147 + -1.2 840,147 + -2.1 840,147 + -1.0 840,147 + -1.0 840,147 + -2.2 840,147 + -2.4 840,147 + -0.6 840,147 + -1.1 840,147 + -0.5 840,147 + +1.4 840,155 - -0.9 840,155 - -1.3 840,155 - -0.6 840,155 - -0.0 840,155 - -1.3 840,155 - +0.3 840,155 - +2.1 840,155 - +1.6 840,155 - +0.1 840,155 - +1.3 840,155 - -2.7 840,155 - -3.4 840,155 - -0.3 840,171 + -1.6 840,186 - -0.9 840,231 + +2.0 840,238 - -1.1 840,288 - -1.6 840,314 - +1.3 840,317 + -1.5 840,322 - -1.4 840,326 + -3.2 840,340 + -3.0 840,369 - Synpcc7942_0846 0.13 +2.3 840,386 + Synpcc7942_0846 0.15 +1.7 840,389 - Synpcc7942_0846 0.15 -1.6 840,403 - Synpcc7942_0846 0.17 +2.0 840,436 + Synpcc7942_0846 0.21 +1.4 840,439 - Synpcc7942_0846 0.21 +2.0 840,462 + Synpcc7942_0846 0.24 +2.1 840,462 + Synpcc7942_0846 0.24 -0.9 840,462 + Synpcc7942_0846 0.24 +0.1 840,482 + Synpcc7942_0846 0.27 +0.1 840,483 + Synpcc7942_0846 0.27 -0.0 840,483 + Synpcc7942_0846 0.27 +1.4 840,483 + Synpcc7942_0846 0.27 +2.5 840,491 - Synpcc7942_0846 0.28 +1.0 840,491 - Synpcc7942_0846 0.28 -1.0 840,491 - Synpcc7942_0846 0.28 -0.7 840,491 - Synpcc7942_0846 0.28 +0.5 840,509 - +0.6 840,509 - Synpcc7942_0846 0.30 -0.4 840,511 - Synpcc7942_0846 0.30 +2.2 840,528 + Synpcc7942_0846 0.32 -0.9 840,553 - Synpcc7942_0846 0.35 -0.8 840,572 + Synpcc7942_0846 0.38 +2.1 840,572 + Synpcc7942_0846 0.38 +0.4 840,593 + Synpcc7942_0846 0.40 -0.7 840,601 + Synpcc7942_0846 0.41 -1.4 840,603 + Synpcc7942_0846 0.42 +1.0 840,619 - Synpcc7942_0846 0.43 -0.6 840,628 - Synpcc7942_0846 0.45 +0.3 840,634 + Synpcc7942_0846 0.45 -0.1 840,645 - Synpcc7942_0846 0.47 -0.9 840,655 - Synpcc7942_0846 0.48 -2.3 840,660 - Synpcc7942_0846 0.48 +0.7 840,665 - Synpcc7942_0846 0.49 -0.9 840,665 - Synpcc7942_0846 0.49 -0.8 840,686 + Synpcc7942_0846 0.52 +0.3 840,688 + Synpcc7942_0846 0.52 -0.7 840,698 + Synpcc7942_0846 0.53 -1.6 840,707 - Synpcc7942_0846 0.54 -0.4 840,723 - Synpcc7942_0846 0.56 -0.9 840,759 + Synpcc7942_0846 0.61 +0.5 840,767 - Synpcc7942_0846 0.62 +0.8
Or see this region's nucleotide sequence