Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0762 and Synpcc7942_0763 are separated by 427 nucleotides Synpcc7942_0763 and Synpcc7942_0764 are separated by 37 nucleotides Synpcc7942_0764 and Synpcc7942_0765 are separated by 243 nucleotides Synpcc7942_0765 and Synpcc7942_0766 are separated by 62 nucleotides
Synpcc7942_0762: Synpcc7942_0762 - hypothetical protein, at 756,010 to 756,561
_0762
Synpcc7942_0763: Synpcc7942_0763 - transcriptional regulator, XRE family, at 756,989 to 757,318
_0763
Synpcc7942_0764: Synpcc7942_0764 - transcriptional regulator, XRE family, at 757,356 to 757,595
_0764
Synpcc7942_0765: Synpcc7942_0765 - hypothetical protein, at 757,839 to 758,327
_0765
Synpcc7942_0766: Synpcc7942_0766 - DNA-damage-inducible protein, at 758,390 to 759,037
_0766
Position (kb) 757
758 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 756.570 kb on + strand at 756.580 kb on + strand at 756.679 kb on - strand at 756.703 kb on - strand at 756.704 kb on - strand at 756.714 kb on - strand at 756.714 kb on - strand at 756.753 kb on + strand at 756.775 kb on - strand at 757.043 kb on + strand, within Synpcc7942_0763 at 757.076 kb on + strand, within Synpcc7942_0763 at 757.084 kb on - strand, within Synpcc7942_0763 at 757.084 kb on - strand, within Synpcc7942_0763 at 757.091 kb on - strand, within Synpcc7942_0763 at 757.113 kb on - strand, within Synpcc7942_0763 at 757.115 kb on + strand, within Synpcc7942_0763 at 757.115 kb on + strand, within Synpcc7942_0763 at 757.123 kb on - strand, within Synpcc7942_0763 at 757.142 kb on - strand, within Synpcc7942_0763 at 757.181 kb on - strand, within Synpcc7942_0763 at 757.181 kb on - strand, within Synpcc7942_0763 at 757.181 kb on - strand, within Synpcc7942_0763 at 757.198 kb on + strand, within Synpcc7942_0763 at 757.201 kb on - strand, within Synpcc7942_0763 at 757.206 kb on - strand, within Synpcc7942_0763 at 757.206 kb on - strand, within Synpcc7942_0763 at 757.374 kb on + strand at 757.374 kb on - strand at 757.453 kb on - strand, within Synpcc7942_0764 at 757.497 kb on + strand, within Synpcc7942_0764 at 757.512 kb on + strand, within Synpcc7942_0764 at 757.547 kb on - strand, within Synpcc7942_0764 at 757.579 kb on - strand at 757.987 kb on + strand, within Synpcc7942_0765 at 758.039 kb on - strand, within Synpcc7942_0765 at 758.079 kb on + strand at 758.093 kb on + strand, within Synpcc7942_0765 at 758.093 kb on + strand, within Synpcc7942_0765 at 758.101 kb on - strand, within Synpcc7942_0765 at 758.122 kb on - strand, within Synpcc7942_0765 at 758.129 kb on + strand, within Synpcc7942_0765 at 758.142 kb on + strand, within Synpcc7942_0765 at 758.172 kb on + strand, within Synpcc7942_0765 at 758.177 kb on + strand, within Synpcc7942_0765 at 758.188 kb on + strand, within Synpcc7942_0765 at 758.212 kb on + strand, within Synpcc7942_0765 at 758.227 kb on + strand, within Synpcc7942_0765 at 758.242 kb on + strand, within Synpcc7942_0765 at 758.255 kb on - strand, within Synpcc7942_0765 at 758.257 kb on + strand, within Synpcc7942_0765 at 758.258 kb on - strand, within Synpcc7942_0765 at 758.265 kb on + strand, within Synpcc7942_0765 at 758.270 kb on + strand, within Synpcc7942_0765 at 758.295 kb on - strand at 758.353 kb on + strand at 758.393 kb on + strand at 758.409 kb on + strand at 758.420 kb on + strand at 758.420 kb on + strand at 758.437 kb on + strand at 758.437 kb on - strand at 758.520 kb on + strand, within Synpcc7942_0766 at 758.520 kb on + strand, within Synpcc7942_0766 at 758.525 kb on + strand, within Synpcc7942_0766 at 758.525 kb on + strand, within Synpcc7942_0766 at 758.528 kb on - strand, within Synpcc7942_0766 at 758.528 kb on - strand, within Synpcc7942_0766 at 758.528 kb on - strand, within Synpcc7942_0766 at 758.542 kb on + strand, within Synpcc7942_0766 at 758.547 kb on + strand, within Synpcc7942_0766 at 758.578 kb on + strand, within Synpcc7942_0766
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 756,570 + +0.9 756,580 + +1.9 756,679 - -1.2 756,703 - +1.1 756,704 - -3.4 756,714 - +0.9 756,714 - -1.1 756,753 + +0.7 756,775 - -1.8 757,043 + Synpcc7942_0763 0.16 -3.9 757,076 + Synpcc7942_0763 0.26 +0.9 757,084 - Synpcc7942_0763 0.29 -0.4 757,084 - Synpcc7942_0763 0.29 -2.1 757,091 - Synpcc7942_0763 0.31 -2.9 757,113 - Synpcc7942_0763 0.38 -0.6 757,115 + Synpcc7942_0763 0.38 +2.9 757,115 + Synpcc7942_0763 0.38 -1.0 757,123 - Synpcc7942_0763 0.41 -2.4 757,142 - Synpcc7942_0763 0.46 -0.2 757,181 - Synpcc7942_0763 0.58 +1.7 757,181 - Synpcc7942_0763 0.58 +1.8 757,181 - Synpcc7942_0763 0.58 -4.1 757,198 + Synpcc7942_0763 0.63 -0.1 757,201 - Synpcc7942_0763 0.64 -0.3 757,206 - Synpcc7942_0763 0.66 -0.7 757,206 - Synpcc7942_0763 0.66 -1.0 757,374 + -1.1 757,374 - +1.5 757,453 - Synpcc7942_0764 0.40 -0.4 757,497 + Synpcc7942_0764 0.59 -1.3 757,512 + Synpcc7942_0764 0.65 -0.5 757,547 - Synpcc7942_0764 0.80 -1.7 757,579 - -0.9 757,987 + Synpcc7942_0765 0.30 -2.6 758,039 - Synpcc7942_0765 0.41 -0.6 758,079 + -0.4 758,093 + Synpcc7942_0765 0.52 +2.9 758,093 + Synpcc7942_0765 0.52 +2.9 758,101 - Synpcc7942_0765 0.54 -0.6 758,122 - Synpcc7942_0765 0.58 +1.5 758,129 + Synpcc7942_0765 0.59 +0.4 758,142 + Synpcc7942_0765 0.62 +2.7 758,172 + Synpcc7942_0765 0.68 -0.1 758,177 + Synpcc7942_0765 0.69 -1.0 758,188 + Synpcc7942_0765 0.71 +1.5 758,212 + Synpcc7942_0765 0.76 +2.2 758,227 + Synpcc7942_0765 0.79 -1.1 758,242 + Synpcc7942_0765 0.82 -0.1 758,255 - Synpcc7942_0765 0.85 +0.5 758,257 + Synpcc7942_0765 0.85 -0.2 758,258 - Synpcc7942_0765 0.86 -0.6 758,265 + Synpcc7942_0765 0.87 +2.5 758,270 + Synpcc7942_0765 0.88 -0.1 758,295 - -0.9 758,353 + +0.3 758,393 + -0.8 758,409 + +1.7 758,420 + +1.9 758,420 + -1.6 758,437 + +1.9 758,437 - -1.2 758,520 + Synpcc7942_0766 0.20 -1.1 758,520 + Synpcc7942_0766 0.20 -0.9 758,525 + Synpcc7942_0766 0.21 +3.0 758,525 + Synpcc7942_0766 0.21 -1.8 758,528 - Synpcc7942_0766 0.21 -1.0 758,528 - Synpcc7942_0766 0.21 +1.4 758,528 - Synpcc7942_0766 0.21 -0.1 758,542 + Synpcc7942_0766 0.23 -0.7 758,547 + Synpcc7942_0766 0.24 +0.9 758,578 + Synpcc7942_0766 0.29 -1.9
Or see this region's nucleotide sequence