Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0756 and Synpcc7942_0757 are separated by 406 nucleotides Synpcc7942_0757 and Synpcc7942_0758 are separated by 1 nucleotides Synpcc7942_0758 and Synpcc7942_0759 are separated by 192 nucleotides
Synpcc7942_0756: Synpcc7942_0756 - chain A, D20c mutant of T4 lysozyme, at 750,406 to 750,870
_0756
Synpcc7942_0757: Synpcc7942_0757 - hypothetical protein, at 751,277 to 751,957
_0757
Synpcc7942_0758: Synpcc7942_0758 - hypothetical protein, at 751,959 to 752,381
_0758
Synpcc7942_0759: Synpcc7942_0759 - hypothetical protein, at 752,574 to 753,953
_0759
Position (kb) 751
752 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 750.331 kb on + strand at 750.339 kb on - strand at 750.348 kb on - strand at 750.352 kb on + strand at 750.354 kb on - strand at 750.354 kb on - strand at 750.355 kb on + strand at 750.360 kb on - strand at 750.363 kb on - strand at 750.390 kb on + strand at 750.417 kb on + strand at 750.438 kb on + strand at 750.480 kb on + strand, within Synpcc7942_0756 at 750.489 kb on - strand, within Synpcc7942_0756 at 750.502 kb on + strand, within Synpcc7942_0756 at 750.571 kb on - strand, within Synpcc7942_0756 at 750.597 kb on - strand, within Synpcc7942_0756 at 750.605 kb on - strand, within Synpcc7942_0756 at 750.618 kb on + strand, within Synpcc7942_0756 at 750.623 kb on + strand, within Synpcc7942_0756 at 750.631 kb on - strand, within Synpcc7942_0756 at 750.634 kb on + strand, within Synpcc7942_0756 at 750.639 kb on + strand, within Synpcc7942_0756 at 750.644 kb on + strand, within Synpcc7942_0756 at 750.644 kb on + strand, within Synpcc7942_0756 at 750.652 kb on - strand, within Synpcc7942_0756 at 750.654 kb on + strand, within Synpcc7942_0756 at 750.717 kb on + strand, within Synpcc7942_0756 at 750.726 kb on + strand, within Synpcc7942_0756 at 750.742 kb on - strand, within Synpcc7942_0756 at 750.742 kb on - strand, within Synpcc7942_0756 at 750.742 kb on - strand, within Synpcc7942_0756 at 750.756 kb on + strand, within Synpcc7942_0756 at 750.762 kb on + strand, within Synpcc7942_0756 at 750.772 kb on + strand, within Synpcc7942_0756 at 750.781 kb on + strand, within Synpcc7942_0756 at 750.783 kb on + strand, within Synpcc7942_0756 at 750.789 kb on - strand, within Synpcc7942_0756 at 750.792 kb on + strand, within Synpcc7942_0756 at 750.792 kb on + strand, within Synpcc7942_0756 at 750.792 kb on + strand, within Synpcc7942_0756 at 750.797 kb on + strand, within Synpcc7942_0756 at 750.800 kb on - strand, within Synpcc7942_0756 at 750.800 kb on - strand, within Synpcc7942_0756 at 750.800 kb on - strand, within Synpcc7942_0756 at 750.802 kb on + strand, within Synpcc7942_0756 at 750.802 kb on + strand, within Synpcc7942_0756 at 750.818 kb on - strand, within Synpcc7942_0756 at 750.821 kb on + strand, within Synpcc7942_0756 at 750.853 kb on - strand at 750.859 kb on - strand at 750.868 kb on - strand at 750.879 kb on - strand at 750.927 kb on - strand at 751.023 kb on + strand at 751.047 kb on + strand at 751.099 kb on + strand at 751.441 kb on + strand, within Synpcc7942_0757 at 751.523 kb on - strand, within Synpcc7942_0757 at 751.712 kb on - strand, within Synpcc7942_0757 at 751.712 kb on - strand, within Synpcc7942_0757 at 752.506 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 750,331 + -0.5 750,339 - -3.1 750,348 - +0.7 750,352 + +2.2 750,354 - +1.5 750,354 - +0.6 750,355 + -2.8 750,360 - +0.9 750,363 - +1.9 750,390 + -0.9 750,417 + +1.8 750,438 + +1.9 750,480 + Synpcc7942_0756 0.16 -0.2 750,489 - Synpcc7942_0756 0.18 +0.8 750,502 + Synpcc7942_0756 0.21 -0.1 750,571 - Synpcc7942_0756 0.35 -1.8 750,597 - Synpcc7942_0756 0.41 -0.4 750,605 - Synpcc7942_0756 0.43 +1.7 750,618 + Synpcc7942_0756 0.46 +0.6 750,623 + Synpcc7942_0756 0.47 -2.6 750,631 - Synpcc7942_0756 0.48 -0.9 750,634 + Synpcc7942_0756 0.49 +1.3 750,639 + Synpcc7942_0756 0.50 -1.1 750,644 + Synpcc7942_0756 0.51 -4.0 750,644 + Synpcc7942_0756 0.51 -1.5 750,652 - Synpcc7942_0756 0.53 -1.2 750,654 + Synpcc7942_0756 0.53 +0.5 750,717 + Synpcc7942_0756 0.67 +2.1 750,726 + Synpcc7942_0756 0.69 -1.4 750,742 - Synpcc7942_0756 0.72 -1.3 750,742 - Synpcc7942_0756 0.72 -0.1 750,742 - Synpcc7942_0756 0.72 +0.0 750,756 + Synpcc7942_0756 0.75 -0.8 750,762 + Synpcc7942_0756 0.77 +0.7 750,772 + Synpcc7942_0756 0.79 -1.8 750,781 + Synpcc7942_0756 0.81 -0.9 750,783 + Synpcc7942_0756 0.81 +1.1 750,789 - Synpcc7942_0756 0.82 +0.9 750,792 + Synpcc7942_0756 0.83 -2.5 750,792 + Synpcc7942_0756 0.83 +0.1 750,792 + Synpcc7942_0756 0.83 -0.9 750,797 + Synpcc7942_0756 0.84 -1.4 750,800 - Synpcc7942_0756 0.85 -1.5 750,800 - Synpcc7942_0756 0.85 -2.1 750,800 - Synpcc7942_0756 0.85 +2.3 750,802 + Synpcc7942_0756 0.85 +0.2 750,802 + Synpcc7942_0756 0.85 +0.9 750,818 - Synpcc7942_0756 0.89 +3.3 750,821 + Synpcc7942_0756 0.89 -0.4 750,853 - -3.0 750,859 - -2.6 750,868 - -1.3 750,879 - -0.9 750,927 - +0.9 751,023 + -0.2 751,047 + -2.6 751,099 + -1.9 751,441 + Synpcc7942_0757 0.24 -3.1 751,523 - Synpcc7942_0757 0.36 -1.5 751,712 - Synpcc7942_0757 0.64 -1.3 751,712 - Synpcc7942_0757 0.64 -0.9 752,506 + +0.2
Or see this region's nucleotide sequence