Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0720 and Synpcc7942_0721 are separated by 202 nucleotides Synpcc7942_0721 and Synpcc7942_0722 are separated by 60 nucleotides Synpcc7942_0722 and Synpcc7942_0723 are separated by 296 nucleotides Synpcc7942_0723 and Synpcc7942_0724 are separated by 40 nucleotides
Synpcc7942_0720: Synpcc7942_0720 - hypothetical protein, at 715,051 to 715,389
_0720
Synpcc7942_0721: Synpcc7942_0721 - hypothetical protein, at 715,592 to 715,882
_0721
Synpcc7942_0722: Synpcc7942_0722 - hypothetical protein, at 715,943 to 717,025
_0722
Synpcc7942_0723: Synpcc7942_0723 - hypothetical protein, at 717,322 to 717,963
_0723
Synpcc7942_0724: Synpcc7942_0724 - hypothetical protein, at 718,004 to 718,447
_0724
Position (kb) 715
716
717
718 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 714.948 kb on - strand at 714.977 kb on - strand at 714.979 kb on - strand at 714.995 kb on - strand at 715.006 kb on + strand at 715.007 kb on + strand at 715.018 kb on + strand at 715.040 kb on - strand at 715.056 kb on + strand at 715.064 kb on - strand at 715.064 kb on - strand at 715.068 kb on + strand at 715.125 kb on + strand, within Synpcc7942_0720 at 715.194 kb on + strand, within Synpcc7942_0720 at 715.196 kb on - strand at 715.202 kb on - strand, within Synpcc7942_0720 at 715.257 kb on + strand, within Synpcc7942_0720 at 715.257 kb on + strand, within Synpcc7942_0720 at 715.274 kb on + strand, within Synpcc7942_0720 at 715.284 kb on + strand, within Synpcc7942_0720 at 715.284 kb on + strand, within Synpcc7942_0720 at 715.384 kb on + strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.401 kb on + strand at 715.401 kb on + strand at 715.431 kb on + strand at 715.442 kb on + strand at 715.442 kb on + strand at 715.449 kb on + strand at 715.449 kb on + strand at 715.457 kb on - strand at 715.464 kb on + strand at 715.464 kb on + strand at 715.467 kb on - strand at 715.470 kb on + strand at 715.472 kb on - strand at 715.495 kb on - strand at 715.544 kb on - strand at 715.571 kb on + strand at 715.598 kb on - strand at 715.603 kb on - strand at 715.607 kb on + strand at 715.607 kb on + strand at 715.615 kb on - strand at 715.630 kb on - strand, within Synpcc7942_0721 at 715.630 kb on - strand, within Synpcc7942_0721 at 715.630 kb on - strand, within Synpcc7942_0721 at 715.635 kb on + strand, within Synpcc7942_0721 at 715.668 kb on + strand, within Synpcc7942_0721 at 715.679 kb on - strand, within Synpcc7942_0721 at 715.681 kb on - strand, within Synpcc7942_0721 at 715.686 kb on - strand, within Synpcc7942_0721 at 715.689 kb on + strand, within Synpcc7942_0721 at 715.689 kb on + strand, within Synpcc7942_0721 at 715.723 kb on + strand, within Synpcc7942_0721 at 715.725 kb on - strand, within Synpcc7942_0721 at 715.801 kb on + strand, within Synpcc7942_0721 at 715.806 kb on + strand, within Synpcc7942_0721 at 715.806 kb on + strand, within Synpcc7942_0721 at 715.815 kb on + strand, within Synpcc7942_0721 at 715.829 kb on + strand, within Synpcc7942_0721 at 715.943 kb on - strand at 715.943 kb on - strand at 715.943 kb on - strand at 715.969 kb on + strand at 715.999 kb on + strand at 716.004 kb on + strand at 716.004 kb on + strand at 716.011 kb on - strand at 716.071 kb on + strand, within Synpcc7942_0722 at 716.082 kb on + strand, within Synpcc7942_0722 at 716.082 kb on + strand, within Synpcc7942_0722 at 716.089 kb on - strand, within Synpcc7942_0722 at 716.089 kb on - strand, within Synpcc7942_0722 at 716.089 kb on - strand, within Synpcc7942_0722 at 716.090 kb on - strand, within Synpcc7942_0722 at 716.090 kb on - strand, within Synpcc7942_0722 at 716.101 kb on + strand, within Synpcc7942_0722 at 716.109 kb on - strand, within Synpcc7942_0722 at 716.109 kb on - strand, within Synpcc7942_0722 at 716.116 kb on + strand, within Synpcc7942_0722 at 716.124 kb on - strand, within Synpcc7942_0722 at 716.149 kb on - strand, within Synpcc7942_0722 at 716.151 kb on + strand, within Synpcc7942_0722 at 716.151 kb on + strand, within Synpcc7942_0722 at 716.159 kb on - strand, within Synpcc7942_0722 at 716.184 kb on - strand, within Synpcc7942_0722 at 716.220 kb on + strand, within Synpcc7942_0722 at 716.220 kb on + strand, within Synpcc7942_0722 at 716.221 kb on + strand, within Synpcc7942_0722 at 716.230 kb on + strand, within Synpcc7942_0722 at 716.236 kb on + strand, within Synpcc7942_0722 at 716.284 kb on + strand, within Synpcc7942_0722 at 716.289 kb on + strand at 716.301 kb on + strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.341 kb on + strand, within Synpcc7942_0722 at 716.356 kb on + strand, within Synpcc7942_0722 at 716.356 kb on + strand, within Synpcc7942_0722 at 716.358 kb on + strand, within Synpcc7942_0722 at 716.374 kb on - strand, within Synpcc7942_0722 at 716.378 kb on + strand, within Synpcc7942_0722 at 716.378 kb on - strand, within Synpcc7942_0722 at 716.386 kb on - strand, within Synpcc7942_0722 at 716.387 kb on - strand, within Synpcc7942_0722 at 716.394 kb on - strand, within Synpcc7942_0722 at 716.397 kb on - strand, within Synpcc7942_0722 at 716.421 kb on - strand, within Synpcc7942_0722 at 716.421 kb on - strand at 716.430 kb on - strand at 716.448 kb on + strand, within Synpcc7942_0722 at 716.473 kb on - strand, within Synpcc7942_0722 at 716.475 kb on + strand, within Synpcc7942_0722 at 716.480 kb on + strand, within Synpcc7942_0722 at 716.480 kb on + strand, within Synpcc7942_0722 at 716.483 kb on - strand, within Synpcc7942_0722 at 716.532 kb on + strand, within Synpcc7942_0722 at 716.532 kb on + strand, within Synpcc7942_0722 at 716.532 kb on + strand at 716.532 kb on + strand, within Synpcc7942_0722 at 716.545 kb on - strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.574 kb on - strand, within Synpcc7942_0722 at 716.574 kb on - strand, within Synpcc7942_0722 at 716.574 kb on - strand, within Synpcc7942_0722 at 716.583 kb on + strand, within Synpcc7942_0722 at 716.597 kb on - strand, within Synpcc7942_0722 at 716.607 kb on - strand, within Synpcc7942_0722 at 716.616 kb on + strand, within Synpcc7942_0722 at 716.635 kb on - strand, within Synpcc7942_0722 at 716.677 kb on - strand, within Synpcc7942_0722 at 716.687 kb on - strand, within Synpcc7942_0722 at 716.702 kb on - strand, within Synpcc7942_0722 at 716.707 kb on - strand, within Synpcc7942_0722 at 716.722 kb on - strand, within Synpcc7942_0722 at 716.729 kb on - strand, within Synpcc7942_0722 at 716.729 kb on - strand, within Synpcc7942_0722 at 716.764 kb on - strand, within Synpcc7942_0722 at 716.800 kb on + strand, within Synpcc7942_0722 at 716.808 kb on - strand, within Synpcc7942_0722 at 716.810 kb on - strand, within Synpcc7942_0722 at 716.823 kb on - strand, within Synpcc7942_0722 at 716.836 kb on + strand, within Synpcc7942_0722 at 716.854 kb on + strand, within Synpcc7942_0722 at 716.860 kb on + strand, within Synpcc7942_0722 at 716.860 kb on + strand, within Synpcc7942_0722 at 716.860 kb on + strand, within Synpcc7942_0722 at 716.868 kb on - strand, within Synpcc7942_0722 at 716.879 kb on - strand, within Synpcc7942_0722 at 716.903 kb on - strand, within Synpcc7942_0722 at 716.903 kb on - strand, within Synpcc7942_0722 at 716.908 kb on + strand, within Synpcc7942_0722 at 716.913 kb on + strand, within Synpcc7942_0722 at 716.925 kb on + strand at 716.925 kb on + strand at 716.925 kb on + strand at 716.925 kb on + strand at 716.925 kb on + strand at 716.930 kb on + strand at 716.930 kb on + strand at 716.930 kb on + strand at 716.930 kb on + strand at 716.930 kb on + strand at 716.930 kb on + strand at 716.930 kb on + strand at 716.931 kb on + strand at 716.933 kb on - strand at 716.937 kb on + strand at 716.938 kb on - strand at 716.938 kb on - strand at 716.938 kb on - strand at 716.938 kb on - strand at 716.938 kb on - strand at 716.938 kb on - strand at 716.938 kb on - strand at 716.938 kb on - strand at 716.938 kb on - strand at 716.947 kb on + strand at 716.960 kb on + strand at 716.967 kb on + strand at 716.978 kb on - strand at 716.988 kb on + strand at 716.996 kb on - strand at 717.112 kb on + strand at 717.167 kb on + strand at 717.167 kb on + strand at 717.167 kb on + strand at 717.175 kb on - strand at 717.175 kb on - strand at 717.204 kb on + strand at 717.204 kb on + strand at 717.212 kb on - strand at 717.212 kb on - strand at 717.233 kb on - strand at 717.271 kb on + strand at 717.271 kb on + strand at 717.284 kb on + strand at 717.284 kb on + strand at 717.284 kb on + strand at 717.287 kb on - strand at 717.290 kb on + strand at 717.309 kb on + strand at 717.317 kb on - strand at 717.317 kb on - strand at 717.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 714,948 - -0.0 714,977 - +0.6 714,979 - -0.7 714,995 - -1.0 715,006 + -0.0 715,007 + -0.5 715,018 + -1.2 715,040 - -0.9 715,056 + -0.6 715,064 - -4.8 715,064 - -1.0 715,068 + -0.9 715,125 + Synpcc7942_0720 0.22 +0.1 715,194 + Synpcc7942_0720 0.42 -0.0 715,196 - -0.7 715,202 - Synpcc7942_0720 0.45 -1.4 715,257 + Synpcc7942_0720 0.61 +0.4 715,257 + Synpcc7942_0720 0.61 +2.3 715,274 + Synpcc7942_0720 0.66 +2.0 715,284 + Synpcc7942_0720 0.69 -1.4 715,284 + Synpcc7942_0720 0.69 -1.9 715,384 + -0.5 715,392 - -0.6 715,392 - +1.4 715,392 - +1.8 715,392 - -2.3 715,401 + -1.5 715,401 + -1.2 715,431 + -0.5 715,442 + -0.8 715,442 + -2.7 715,449 + -1.1 715,449 + -1.9 715,457 - -1.9 715,464 + +1.1 715,464 + -1.3 715,467 - -1.2 715,470 + -0.0 715,472 - -0.5 715,495 - +0.4 715,544 - +2.5 715,571 + +2.4 715,598 - +1.0 715,603 - -1.2 715,607 + +1.0 715,607 + +1.0 715,615 - -0.0 715,630 - Synpcc7942_0721 0.13 +0.4 715,630 - Synpcc7942_0721 0.13 -2.7 715,630 - Synpcc7942_0721 0.13 +0.2 715,635 + Synpcc7942_0721 0.15 +0.2 715,668 + Synpcc7942_0721 0.26 +1.0 715,679 - Synpcc7942_0721 0.30 -0.9 715,681 - Synpcc7942_0721 0.31 -0.8 715,686 - Synpcc7942_0721 0.32 +1.0 715,689 + Synpcc7942_0721 0.33 +1.0 715,689 + Synpcc7942_0721 0.33 +1.7 715,723 + Synpcc7942_0721 0.45 -1.9 715,725 - Synpcc7942_0721 0.46 -0.6 715,801 + Synpcc7942_0721 0.72 +0.7 715,806 + Synpcc7942_0721 0.74 -1.3 715,806 + Synpcc7942_0721 0.74 +1.0 715,815 + Synpcc7942_0721 0.77 -3.2 715,829 + Synpcc7942_0721 0.81 -1.0 715,943 - -0.0 715,943 - -0.0 715,943 - -1.4 715,969 + -1.8 715,999 + -1.5 716,004 + -1.0 716,004 + -1.7 716,011 - -1.2 716,071 + Synpcc7942_0722 0.12 +1.0 716,082 + Synpcc7942_0722 0.13 +1.0 716,082 + Synpcc7942_0722 0.13 -1.6 716,089 - Synpcc7942_0722 0.13 -4.9 716,089 - Synpcc7942_0722 0.13 -0.6 716,089 - Synpcc7942_0722 0.13 -0.6 716,090 - Synpcc7942_0722 0.14 +1.0 716,090 - Synpcc7942_0722 0.14 +1.0 716,101 + Synpcc7942_0722 0.15 -2.3 716,109 - Synpcc7942_0722 0.15 +1.0 716,109 - Synpcc7942_0722 0.15 -0.0 716,116 + Synpcc7942_0722 0.16 -0.0 716,124 - Synpcc7942_0722 0.17 -3.2 716,149 - Synpcc7942_0722 0.19 -0.0 716,151 + Synpcc7942_0722 0.19 -2.2 716,151 + Synpcc7942_0722 0.19 -2.3 716,159 - Synpcc7942_0722 0.20 +0.7 716,184 - Synpcc7942_0722 0.22 +1.0 716,220 + Synpcc7942_0722 0.26 -1.3 716,220 + Synpcc7942_0722 0.26 -0.4 716,221 + Synpcc7942_0722 0.26 -0.6 716,230 + Synpcc7942_0722 0.27 +2.0 716,236 + Synpcc7942_0722 0.27 +0.7 716,284 + Synpcc7942_0722 0.31 +1.0 716,289 + -0.0 716,301 + Synpcc7942_0722 0.33 -0.0 716,309 - Synpcc7942_0722 0.34 +1.0 716,309 - Synpcc7942_0722 0.34 -1.2 716,309 - Synpcc7942_0722 0.34 +0.3 716,309 - Synpcc7942_0722 0.34 +2.5 716,341 + Synpcc7942_0722 0.37 +1.0 716,356 + Synpcc7942_0722 0.38 +0.3 716,356 + Synpcc7942_0722 0.38 -0.9 716,358 + Synpcc7942_0722 0.38 -0.3 716,374 - Synpcc7942_0722 0.40 -0.6 716,378 + Synpcc7942_0722 0.40 +0.1 716,378 - Synpcc7942_0722 0.40 -1.7 716,386 - Synpcc7942_0722 0.41 -1.8 716,387 - Synpcc7942_0722 0.41 -2.3 716,394 - Synpcc7942_0722 0.42 -0.3 716,397 - Synpcc7942_0722 0.42 -1.2 716,421 - Synpcc7942_0722 0.44 -1.6 716,421 - -0.6 716,430 - -1.2 716,448 + Synpcc7942_0722 0.47 +0.8 716,473 - Synpcc7942_0722 0.49 +2.5 716,475 + Synpcc7942_0722 0.49 -0.0 716,480 + Synpcc7942_0722 0.50 -0.8 716,480 + Synpcc7942_0722 0.50 -1.6 716,483 - Synpcc7942_0722 0.50 -0.4 716,532 + Synpcc7942_0722 0.54 -1.7 716,532 + Synpcc7942_0722 0.54 -0.5 716,532 + -1.6 716,532 + Synpcc7942_0722 0.54 -1.1 716,545 - Synpcc7942_0722 0.56 -0.8 716,566 + Synpcc7942_0722 0.58 -0.6 716,566 + Synpcc7942_0722 0.58 -0.0 716,566 + Synpcc7942_0722 0.58 +2.5 716,566 + Synpcc7942_0722 0.58 -2.3 716,566 + Synpcc7942_0722 0.58 -1.0 716,574 - Synpcc7942_0722 0.58 -1.4 716,574 - Synpcc7942_0722 0.58 -0.9 716,574 - Synpcc7942_0722 0.58 -0.4 716,583 + Synpcc7942_0722 0.59 -1.0 716,597 - Synpcc7942_0722 0.60 +0.2 716,607 - Synpcc7942_0722 0.61 -0.6 716,616 + Synpcc7942_0722 0.62 -0.0 716,635 - Synpcc7942_0722 0.64 +0.5 716,677 - Synpcc7942_0722 0.68 +0.4 716,687 - Synpcc7942_0722 0.69 -0.2 716,702 - Synpcc7942_0722 0.70 -2.2 716,707 - Synpcc7942_0722 0.71 +2.0 716,722 - Synpcc7942_0722 0.72 -1.4 716,729 - Synpcc7942_0722 0.73 -2.3 716,729 - Synpcc7942_0722 0.73 +3.5 716,764 - Synpcc7942_0722 0.76 -1.0 716,800 + Synpcc7942_0722 0.79 -0.0 716,808 - Synpcc7942_0722 0.80 -1.3 716,810 - Synpcc7942_0722 0.80 +2.4 716,823 - Synpcc7942_0722 0.81 +0.4 716,836 + Synpcc7942_0722 0.82 -1.8 716,854 + Synpcc7942_0722 0.84 -0.5 716,860 + Synpcc7942_0722 0.85 +1.0 716,860 + Synpcc7942_0722 0.85 -0.6 716,860 + Synpcc7942_0722 0.85 -0.2 716,868 - Synpcc7942_0722 0.85 -2.6 716,879 - Synpcc7942_0722 0.86 -0.6 716,903 - Synpcc7942_0722 0.89 -1.4 716,903 - Synpcc7942_0722 0.89 -3.2 716,908 + Synpcc7942_0722 0.89 -1.1 716,913 + Synpcc7942_0722 0.90 -3.6 716,925 + -1.6 716,925 + -1.0 716,925 + -2.5 716,925 + +1.0 716,925 + -0.4 716,930 + -1.4 716,930 + -0.7 716,930 + +1.0 716,930 + -2.0 716,930 + -1.9 716,930 + -0.0 716,930 + -2.7 716,931 + -0.0 716,933 - +0.2 716,937 + -0.0 716,938 - +0.5 716,938 - +0.2 716,938 - -1.0 716,938 - -1.0 716,938 - -0.4 716,938 - -2.5 716,938 - +2.3 716,938 - +1.0 716,938 - -2.0 716,947 + +2.3 716,960 + -1.0 716,967 + +0.4 716,978 - +1.0 716,988 + -1.0 716,996 - +1.0 717,112 + -0.7 717,167 + -1.2 717,167 + +1.5 717,167 + -0.0 717,175 - +1.0 717,175 - +0.8 717,204 + +1.0 717,204 + -0.0 717,212 - -0.8 717,212 - +1.0 717,233 - -0.0 717,271 + -2.6 717,271 + +1.0 717,284 + +1.0 717,284 + -1.0 717,284 + -0.0 717,287 - +0.2 717,290 + -1.0 717,309 + -0.4 717,317 - -0.6 717,317 - -1.4 717,368 - -0.4
Or see this region's nucleotide sequence