Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0676 and pex overlap by 38 nucleotides pex and rnd are separated by 304 nucleotides rnd and tRNA-Val are separated by 38 nucleotides tRNA-Val and rbp1 are separated by 272 nucleotides rbp1 and Synpcc7942_0680 are separated by 225 nucleotides
Synpcc7942_0676: Synpcc7942_0676 - hypothetical protein, at 670,914 to 672,119
_0676
Synpcc7942_0677: pex - transcriptional regulator, PadR family, at 672,082 to 672,462
pex
Synpcc7942_0678: rnd - 3'-5' exonuclease, at 672,767 to 673,402
rnd
Synpcc7942_R0038: tRNA-Val - tRNA-Val, at 673,441 to 673,512
tRNA-Val
Synpcc7942_0679: rbp1 - RNA-binding region RNP-1, at 673,785 to 674,108
rbp1
Synpcc7942_0680: Synpcc7942_0680 - C-5 sterol desaturase, at 674,334 to 675,149
_0680
Position (kb) 672
673
674 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 672.181 kb on + strand, within pex at 672.214 kb on + strand, within pex at 672.223 kb on + strand, within pex at 672.245 kb on + strand, within pex at 672.255 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.283 kb on + strand, within pex at 672.284 kb on - strand, within pex at 672.284 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.291 kb on - strand, within pex at 672.301 kb on - strand, within pex at 672.303 kb on + strand, within pex at 672.309 kb on + strand, within pex at 672.319 kb on + strand, within pex at 672.322 kb on - strand, within pex at 672.331 kb on + strand, within pex at 672.331 kb on + strand, within pex at 672.345 kb on - strand, within pex at 672.350 kb on - strand, within pex at 672.350 kb on - strand, within pex at 672.350 kb on - strand, within pex at 672.355 kb on - strand, within pex at 672.385 kb on + strand, within pex at 672.402 kb on - strand, within pex at 672.409 kb on - strand, within pex at 672.411 kb on + strand, within pex at 672.415 kb on + strand, within pex at 672.464 kb on - strand at 672.510 kb on + strand at 672.518 kb on - strand at 672.536 kb on + strand at 672.558 kb on + strand at 672.558 kb on + strand at 672.558 kb on + strand at 672.563 kb on + strand at 672.566 kb on - strand at 672.566 kb on - strand at 672.566 kb on - strand at 672.591 kb on + strand at 672.622 kb on + strand at 672.631 kb on - strand at 672.641 kb on - strand at 672.675 kb on - strand at 672.725 kb on - strand at 672.747 kb on + strand at 672.747 kb on + strand at 672.747 kb on + strand at 672.760 kb on + strand at 672.836 kb on + strand, within rnd at 672.898 kb on + strand, within rnd at 672.898 kb on + strand, within rnd at 672.911 kb on - strand, within rnd at 672.953 kb on + strand, within rnd at 672.967 kb on - strand at 672.999 kb on - strand, within rnd at 673.038 kb on + strand, within rnd at 673.046 kb on + strand, within rnd at 673.066 kb on - strand, within rnd at 673.067 kb on - strand, within rnd at 673.067 kb on - strand, within rnd at 673.117 kb on + strand, within rnd at 673.126 kb on - strand, within rnd at 673.138 kb on - strand, within rnd at 673.157 kb on - strand, within rnd at 673.159 kb on - strand, within rnd at 673.159 kb on - strand, within rnd at 673.159 kb on - strand, within rnd at 673.167 kb on + strand, within rnd at 673.177 kb on + strand, within rnd at 673.177 kb on + strand, within rnd at 673.177 kb on + strand, within rnd at 673.185 kb on - strand, within rnd at 673.202 kb on - strand, within rnd at 673.204 kb on + strand, within rnd at 673.212 kb on - strand, within rnd at 673.224 kb on + strand, within rnd at 673.224 kb on + strand, within rnd at 673.232 kb on - strand, within rnd at 673.232 kb on - strand, within rnd at 673.232 kb on - strand, within rnd at 673.232 kb on - strand, within rnd at 673.237 kb on - strand, within rnd at 673.242 kb on - strand, within rnd at 673.275 kb on - strand, within rnd at 673.303 kb on + strand, within rnd at 673.361 kb on - strand at 673.378 kb on + strand at 673.394 kb on - strand at 673.396 kb on + strand at 673.399 kb on + strand at 673.410 kb on - strand at 673.443 kb on - strand at 673.581 kb on + strand at 673.633 kb on - strand at 673.651 kb on + strand at 673.811 kb on - strand at 673.861 kb on - strand, within rbp1 at 673.862 kb on + strand, within rbp1 at 673.870 kb on - strand, within rbp1 at 673.875 kb on - strand, within rbp1 at 673.952 kb on - strand, within rbp1 at 673.975 kb on + strand, within rbp1 at 673.978 kb on - strand, within rbp1 at 674.020 kb on + strand, within rbp1 at 674.041 kb on - strand, within rbp1 at 674.116 kb on + strand at 674.124 kb on - strand at 674.125 kb on - strand at 674.184 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 672,181 + pex Synpcc7942_0677 0.26 -1.6 672,214 + pex Synpcc7942_0677 0.35 +1.0 672,223 + pex Synpcc7942_0677 0.37 +1.0 672,245 + pex Synpcc7942_0677 0.43 -0.0 672,255 + pex Synpcc7942_0677 0.45 -0.7 672,281 + pex Synpcc7942_0677 0.52 +2.5 672,281 + pex Synpcc7942_0677 0.52 +0.0 672,281 + pex Synpcc7942_0677 0.52 +0.7 672,281 + pex Synpcc7942_0677 0.52 -1.3 672,281 + pex Synpcc7942_0677 0.52 -2.2 672,281 + pex Synpcc7942_0677 0.52 -0.6 672,281 + pex Synpcc7942_0677 0.52 -2.5 672,281 + pex Synpcc7942_0677 0.52 -0.0 672,283 + pex Synpcc7942_0677 0.53 +2.0 672,284 - pex Synpcc7942_0677 0.53 +2.0 672,284 - pex Synpcc7942_0677 0.53 +2.0 672,289 - pex Synpcc7942_0677 0.54 -1.2 672,289 - pex Synpcc7942_0677 0.54 -1.1 672,289 - pex Synpcc7942_0677 0.54 -1.0 672,289 - pex Synpcc7942_0677 0.54 -0.0 672,289 - pex Synpcc7942_0677 0.54 -1.7 672,289 - pex Synpcc7942_0677 0.54 -2.1 672,289 - pex Synpcc7942_0677 0.54 +1.3 672,291 - pex Synpcc7942_0677 0.55 -1.4 672,301 - pex Synpcc7942_0677 0.57 +0.5 672,303 + pex Synpcc7942_0677 0.58 -2.7 672,309 + pex Synpcc7942_0677 0.60 +1.0 672,319 + pex Synpcc7942_0677 0.62 +1.0 672,322 - pex Synpcc7942_0677 0.63 -1.5 672,331 + pex Synpcc7942_0677 0.65 -0.2 672,331 + pex Synpcc7942_0677 0.65 +2.0 672,345 - pex Synpcc7942_0677 0.69 +1.0 672,350 - pex Synpcc7942_0677 0.70 -0.6 672,350 - pex Synpcc7942_0677 0.70 -1.4 672,350 - pex Synpcc7942_0677 0.70 -0.6 672,355 - pex Synpcc7942_0677 0.72 +1.1 672,385 + pex Synpcc7942_0677 0.80 -1.3 672,402 - pex Synpcc7942_0677 0.84 +2.0 672,409 - pex Synpcc7942_0677 0.86 +1.7 672,411 + pex Synpcc7942_0677 0.86 +1.0 672,415 + pex Synpcc7942_0677 0.87 +0.1 672,464 - -1.5 672,510 + +1.0 672,518 - +2.0 672,536 + -0.7 672,558 + -2.0 672,558 + +2.5 672,558 + -1.9 672,563 + -0.0 672,566 - -0.5 672,566 - -0.5 672,566 - -0.0 672,591 + +1.4 672,622 + -0.0 672,631 - +1.5 672,641 - +1.5 672,675 - -0.0 672,725 - -1.0 672,747 + -0.4 672,747 + -1.5 672,747 + +0.1 672,760 + -1.0 672,836 + rnd Synpcc7942_0678 0.11 -1.3 672,898 + rnd Synpcc7942_0678 0.21 -2.0 672,898 + rnd Synpcc7942_0678 0.21 +1.0 672,911 - rnd Synpcc7942_0678 0.23 -0.0 672,953 + rnd Synpcc7942_0678 0.29 +0.5 672,967 - -1.0 672,999 - rnd Synpcc7942_0678 0.36 -2.0 673,038 + rnd Synpcc7942_0678 0.43 -0.0 673,046 + rnd Synpcc7942_0678 0.44 -1.4 673,066 - rnd Synpcc7942_0678 0.47 -0.0 673,067 - rnd Synpcc7942_0678 0.47 +1.0 673,067 - rnd Synpcc7942_0678 0.47 +1.0 673,117 + rnd Synpcc7942_0678 0.55 -1.0 673,126 - rnd Synpcc7942_0678 0.56 -1.2 673,138 - rnd Synpcc7942_0678 0.58 +0.1 673,157 - rnd Synpcc7942_0678 0.61 -0.9 673,159 - rnd Synpcc7942_0678 0.62 -1.4 673,159 - rnd Synpcc7942_0678 0.62 +1.0 673,159 - rnd Synpcc7942_0678 0.62 -0.9 673,167 + rnd Synpcc7942_0678 0.63 -1.4 673,177 + rnd Synpcc7942_0678 0.64 +1.0 673,177 + rnd Synpcc7942_0678 0.64 -2.6 673,177 + rnd Synpcc7942_0678 0.64 -1.5 673,185 - rnd Synpcc7942_0678 0.66 -1.6 673,202 - rnd Synpcc7942_0678 0.68 +1.0 673,204 + rnd Synpcc7942_0678 0.69 +2.0 673,212 - rnd Synpcc7942_0678 0.70 -1.0 673,224 + rnd Synpcc7942_0678 0.72 -0.0 673,224 + rnd Synpcc7942_0678 0.72 -0.0 673,232 - rnd Synpcc7942_0678 0.73 +1.4 673,232 - rnd Synpcc7942_0678 0.73 -0.3 673,232 - rnd Synpcc7942_0678 0.73 -3.1 673,232 - rnd Synpcc7942_0678 0.73 -0.0 673,237 - rnd Synpcc7942_0678 0.74 -0.0 673,242 - rnd Synpcc7942_0678 0.75 +1.0 673,275 - rnd Synpcc7942_0678 0.80 -2.1 673,303 + rnd Synpcc7942_0678 0.84 -0.1 673,361 - -1.2 673,378 + +1.0 673,394 - -0.2 673,396 + -0.4 673,399 + -0.6 673,410 - +1.4 673,443 - -3.4 673,581 + -1.0 673,633 - -0.9 673,651 + +0.2 673,811 - +1.0 673,861 - rbp1 Synpcc7942_0679 0.23 -0.4 673,862 + rbp1 Synpcc7942_0679 0.24 -2.4 673,870 - rbp1 Synpcc7942_0679 0.26 +2.0 673,875 - rbp1 Synpcc7942_0679 0.28 -0.6 673,952 - rbp1 Synpcc7942_0679 0.52 -0.0 673,975 + rbp1 Synpcc7942_0679 0.59 +0.4 673,978 - rbp1 Synpcc7942_0679 0.60 -0.0 674,020 + rbp1 Synpcc7942_0679 0.73 +0.8 674,041 - rbp1 Synpcc7942_0679 0.79 -1.0 674,116 + +1.5 674,124 - -1.0 674,125 - -2.1 674,184 + +1.0
Or see this region's nucleotide sequence