Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0453 and cobS overlap by 20 nucleotides cobS and tgt are separated by 28 nucleotides
Synpcc7942_0453: Synpcc7942_0453 - GAF sensor signal transduction histidine kinase, at 442,022 to 443,236
_0453
Synpcc7942_0454: cobS - cobalamin synthase, at 443,217 to 443,972
cobS
Synpcc7942_0455: tgt - queuine tRNA-ribosyltransferase, at 444,001 to 445,155
tgt
Position (kb) 443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 443.209 kb on + strand at 443.215 kb on + strand at 443.215 kb on + strand at 443.953 kb on + strand at 443.953 kb on + strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.981 kb on + strand at 444.004 kb on + strand at 444.017 kb on - strand at 444.042 kb on + strand at 444.042 kb on - strand at 444.070 kb on + strand at 444.073 kb on - strand at 444.073 kb on - strand at 444.096 kb on - strand at 444.107 kb on + strand at 444.207 kb on + strand, within tgt at 444.207 kb on + strand, within tgt at 444.207 kb on + strand, within tgt at 444.207 kb on + strand, within tgt at 444.215 kb on - strand, within tgt at 444.215 kb on - strand, within tgt at 444.215 kb on - strand, within tgt at 444.221 kb on - strand, within tgt at 444.238 kb on + strand, within tgt at 444.246 kb on + strand, within tgt at 444.246 kb on - strand, within tgt at 444.255 kb on - strand, within tgt at 444.274 kb on - strand, within tgt at 444.293 kb on + strand, within tgt at 444.301 kb on - strand, within tgt at 444.334 kb on - strand, within tgt at 444.345 kb on + strand, within tgt at 444.358 kb on - strand, within tgt at 444.358 kb on - strand, within tgt at 444.360 kb on - strand, within tgt at 444.382 kb on + strand, within tgt at 444.382 kb on + strand, within tgt at 444.390 kb on - strand, within tgt at 444.464 kb on - strand, within tgt at 444.483 kb on + strand, within tgt at 444.503 kb on - strand, within tgt at 444.533 kb on - strand, within tgt at 444.576 kb on - strand, within tgt at 444.595 kb on + strand, within tgt at 444.595 kb on + strand, within tgt at 444.595 kb on + strand, within tgt at 444.595 kb on + strand, within tgt at 444.603 kb on - strand, within tgt at 444.603 kb on - strand, within tgt at 444.603 kb on - strand, within tgt at 444.603 kb on - strand, within tgt at 444.738 kb on + strand, within tgt at 444.749 kb on + strand, within tgt at 444.749 kb on + strand, within tgt at 444.749 kb on + strand, within tgt at 444.757 kb on - strand, within tgt at 444.773 kb on + strand, within tgt at 444.796 kb on + strand, within tgt at 444.858 kb on + strand, within tgt at 444.858 kb on + strand, within tgt at 444.871 kb on - strand, within tgt at 444.902 kb on + strand, within tgt at 444.948 kb on + strand, within tgt
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 443,209 + -1.3 443,215 + -1.3 443,215 + -2.1 443,953 + +2.3 443,953 + -3.0 443,961 - -1.9 443,961 - +1.0 443,961 - -0.7 443,961 - -0.9 443,961 - +3.3 443,961 - -1.6 443,961 - -0.3 443,961 - -1.6 443,961 - -1.3 443,981 + +2.0 444,004 + +1.0 444,017 - +3.0 444,042 + -1.0 444,042 - -2.1 444,070 + +1.0 444,073 - -0.6 444,073 - +1.0 444,096 - +1.0 444,107 + +1.0 444,207 + tgt Synpcc7942_0455 0.18 -0.0 444,207 + tgt Synpcc7942_0455 0.18 +1.0 444,207 + tgt Synpcc7942_0455 0.18 -0.6 444,207 + tgt Synpcc7942_0455 0.18 +1.0 444,215 - tgt Synpcc7942_0455 0.19 +2.0 444,215 - tgt Synpcc7942_0455 0.19 +1.0 444,215 - tgt Synpcc7942_0455 0.19 -0.0 444,221 - tgt Synpcc7942_0455 0.19 -0.0 444,238 + tgt Synpcc7942_0455 0.21 +1.0 444,246 + tgt Synpcc7942_0455 0.21 +1.0 444,246 - tgt Synpcc7942_0455 0.21 +1.0 444,255 - tgt Synpcc7942_0455 0.22 +1.0 444,274 - tgt Synpcc7942_0455 0.24 +1.0 444,293 + tgt Synpcc7942_0455 0.25 -0.0 444,301 - tgt Synpcc7942_0455 0.26 +1.0 444,334 - tgt Synpcc7942_0455 0.29 -0.6 444,345 + tgt Synpcc7942_0455 0.30 -0.0 444,358 - tgt Synpcc7942_0455 0.31 +1.0 444,358 - tgt Synpcc7942_0455 0.31 -0.0 444,360 - tgt Synpcc7942_0455 0.31 -1.4 444,382 + tgt Synpcc7942_0455 0.33 +1.0 444,382 + tgt Synpcc7942_0455 0.33 +1.0 444,390 - tgt Synpcc7942_0455 0.34 +1.0 444,464 - tgt Synpcc7942_0455 0.40 -0.0 444,483 + tgt Synpcc7942_0455 0.42 +1.0 444,503 - tgt Synpcc7942_0455 0.43 -0.0 444,533 - tgt Synpcc7942_0455 0.46 +1.0 444,576 - tgt Synpcc7942_0455 0.50 +1.0 444,595 + tgt Synpcc7942_0455 0.51 -0.0 444,595 + tgt Synpcc7942_0455 0.51 +1.0 444,595 + tgt Synpcc7942_0455 0.51 -1.2 444,595 + tgt Synpcc7942_0455 0.51 +1.0 444,603 - tgt Synpcc7942_0455 0.52 +1.0 444,603 - tgt Synpcc7942_0455 0.52 +1.0 444,603 - tgt Synpcc7942_0455 0.52 +1.0 444,603 - tgt Synpcc7942_0455 0.52 -1.6 444,738 + tgt Synpcc7942_0455 0.64 -0.6 444,749 + tgt Synpcc7942_0455 0.65 -0.4 444,749 + tgt Synpcc7942_0455 0.65 -1.3 444,749 + tgt Synpcc7942_0455 0.65 -0.0 444,757 - tgt Synpcc7942_0455 0.65 +1.0 444,773 + tgt Synpcc7942_0455 0.67 -1.0 444,796 + tgt Synpcc7942_0455 0.69 +1.0 444,858 + tgt Synpcc7942_0455 0.74 -0.0 444,858 + tgt Synpcc7942_0455 0.74 +1.0 444,871 - tgt Synpcc7942_0455 0.75 -1.8 444,902 + tgt Synpcc7942_0455 0.78 +0.6 444,948 + tgt Synpcc7942_0455 0.82 -2.6
Or see this region's nucleotide sequence