Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0443 and Synpcc7942_0444 are separated by 39 nucleotides Synpcc7942_0444 and oppC are separated by 342 nucleotides
Synpcc7942_0443: Synpcc7942_0443 - hypothetical protein, at 433,076 to 434,317
_0443
Synpcc7942_0444: Synpcc7942_0444 - hypothetical protein, at 434,357 to 435,040
_0444
Synpcc7942_0445: oppC - ABC-type dipeptide/oligopeptide/nickel transport systems permease components-like, at 435,383 to 436,438
oppC
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 433.373 kb on + strand, within Synpcc7942_0443 at 433.376 kb on - strand, within Synpcc7942_0443 at 433.506 kb on + strand, within Synpcc7942_0443 at 433.512 kb on - strand, within Synpcc7942_0443 at 433.516 kb on + strand, within Synpcc7942_0443 at 433.594 kb on + strand, within Synpcc7942_0443 at 433.594 kb on + strand, within Synpcc7942_0443 at 433.602 kb on - strand, within Synpcc7942_0443 at 433.602 kb on - strand, within Synpcc7942_0443 at 433.603 kb on - strand, within Synpcc7942_0443 at 433.674 kb on + strand, within Synpcc7942_0443 at 433.680 kb on + strand, within Synpcc7942_0443 at 433.750 kb on + strand, within Synpcc7942_0443 at 433.763 kb on - strand, within Synpcc7942_0443 at 433.778 kb on - strand, within Synpcc7942_0443 at 433.788 kb on - strand at 433.811 kb on + strand, within Synpcc7942_0443 at 433.811 kb on + strand, within Synpcc7942_0443 at 433.876 kb on + strand, within Synpcc7942_0443 at 433.882 kb on + strand, within Synpcc7942_0443 at 433.890 kb on - strand, within Synpcc7942_0443 at 433.890 kb on - strand, within Synpcc7942_0443 at 433.918 kb on - strand, within Synpcc7942_0443 at 433.920 kb on - strand, within Synpcc7942_0443 at 433.957 kb on - strand, within Synpcc7942_0443 at 434.009 kb on - strand, within Synpcc7942_0443 at 434.104 kb on + strand, within Synpcc7942_0443 at 434.112 kb on - strand, within Synpcc7942_0443 at 434.153 kb on - strand, within Synpcc7942_0443 at 434.174 kb on + strand, within Synpcc7942_0443 at 434.182 kb on - strand, within Synpcc7942_0443 at 434.182 kb on - strand, within Synpcc7942_0443 at 434.182 kb on - strand, within Synpcc7942_0443 at 434.211 kb on + strand at 434.217 kb on + strand at 434.221 kb on + strand at 434.226 kb on - strand at 434.227 kb on + strand at 434.236 kb on + strand at 434.243 kb on - strand at 434.244 kb on - strand at 434.251 kb on - strand at 434.262 kb on - strand at 434.306 kb on + strand at 434.312 kb on + strand at 434.315 kb on + strand at 434.343 kb on + strand at 434.349 kb on + strand at 434.361 kb on - strand at 434.378 kb on + strand at 434.383 kb on + strand at 434.383 kb on + strand at 434.391 kb on - strand at 434.506 kb on - strand, within Synpcc7942_0444 at 434.516 kb on + strand, within Synpcc7942_0444 at 434.516 kb on + strand, within Synpcc7942_0444 at 434.516 kb on + strand, within Synpcc7942_0444 at 434.522 kb on - strand, within Synpcc7942_0444 at 434.523 kb on + strand, within Synpcc7942_0444 at 434.524 kb on - strand, within Synpcc7942_0444 at 434.524 kb on - strand, within Synpcc7942_0444 at 434.524 kb on - strand, within Synpcc7942_0444 at 434.526 kb on + strand, within Synpcc7942_0444 at 434.526 kb on + strand, within Synpcc7942_0444 at 434.528 kb on + strand, within Synpcc7942_0444 at 434.533 kb on + strand, within Synpcc7942_0444 at 434.534 kb on - strand, within Synpcc7942_0444 at 434.541 kb on - strand, within Synpcc7942_0444 at 434.567 kb on - strand, within Synpcc7942_0444 at 434.652 kb on + strand, within Synpcc7942_0444 at 434.660 kb on - strand, within Synpcc7942_0444 at 434.692 kb on - strand, within Synpcc7942_0444 at 434.731 kb on - strand, within Synpcc7942_0444 at 434.749 kb on + strand, within Synpcc7942_0444 at 434.754 kb on - strand, within Synpcc7942_0444 at 434.789 kb on + strand, within Synpcc7942_0444 at 434.846 kb on - strand, within Synpcc7942_0444 at 434.856 kb on - strand, within Synpcc7942_0444 at 434.875 kb on + strand, within Synpcc7942_0444 at 434.898 kb on + strand, within Synpcc7942_0444 at 434.948 kb on + strand, within Synpcc7942_0444 at 435.016 kb on + strand at 435.016 kb on + strand at 435.016 kb on + strand at 435.018 kb on + strand at 435.026 kb on - strand at 435.043 kb on - strand at 435.117 kb on - strand at 435.308 kb on - strand at 435.310 kb on + strand at 435.310 kb on + strand at 435.387 kb on - strand at 435.387 kb on - strand at 435.401 kb on - strand at 435.434 kb on + strand at 435.435 kb on - strand at 435.442 kb on - strand at 435.442 kb on - strand at 435.450 kb on + strand at 435.460 kb on + strand at 435.526 kb on - strand, within oppC at 435.529 kb on + strand, within oppC at 435.537 kb on - strand at 435.539 kb on - strand, within oppC at 435.572 kb on + strand, within oppC at 435.572 kb on + strand, within oppC at 435.572 kb on + strand, within oppC at 435.572 kb on + strand, within oppC at 435.580 kb on - strand, within oppC at 435.580 kb on - strand, within oppC at 435.599 kb on + strand, within oppC at 435.599 kb on + strand, within oppC at 435.643 kb on - strand, within oppC at 435.650 kb on - strand, within oppC at 435.692 kb on - strand, within oppC at 435.695 kb on - strand, within oppC at 435.755 kb on + strand, within oppC at 435.768 kb on + strand, within oppC at 435.813 kb on + strand, within oppC at 435.813 kb on + strand, within oppC at 435.813 kb on + strand, within oppC at 435.816 kb on - strand, within oppC at 435.818 kb on + strand, within oppC at 435.821 kb on - strand, within oppC at 435.821 kb on - strand, within oppC at 435.824 kb on + strand, within oppC at 435.826 kb on - strand, within oppC at 435.829 kb on - strand, within oppC at 435.830 kb on + strand, within oppC at 435.835 kb on + strand, within oppC at 435.838 kb on - strand, within oppC at 435.865 kb on + strand, within oppC at 435.876 kb on + strand, within oppC at 435.968 kb on + strand, within oppC at 435.969 kb on + strand, within oppC at 435.976 kb on - strand, within oppC at 436.013 kb on + strand, within oppC at 436.024 kb on + strand, within oppC at 436.028 kb on + strand, within oppC
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 433,373 + Synpcc7942_0443 0.24 +0.1 433,376 - Synpcc7942_0443 0.24 -0.7 433,506 + Synpcc7942_0443 0.35 -0.7 433,512 - Synpcc7942_0443 0.35 +1.1 433,516 + Synpcc7942_0443 0.35 -1.0 433,594 + Synpcc7942_0443 0.42 -1.9 433,594 + Synpcc7942_0443 0.42 -1.5 433,602 - Synpcc7942_0443 0.42 -0.0 433,602 - Synpcc7942_0443 0.42 -0.9 433,603 - Synpcc7942_0443 0.42 +1.0 433,674 + Synpcc7942_0443 0.48 -0.4 433,680 + Synpcc7942_0443 0.49 +0.2 433,750 + Synpcc7942_0443 0.54 -2.7 433,763 - Synpcc7942_0443 0.55 -0.9 433,778 - Synpcc7942_0443 0.57 -0.6 433,788 - -1.0 433,811 + Synpcc7942_0443 0.59 -1.0 433,811 + Synpcc7942_0443 0.59 -1.3 433,876 + Synpcc7942_0443 0.64 -0.7 433,882 + Synpcc7942_0443 0.65 +0.8 433,890 - Synpcc7942_0443 0.66 -1.5 433,890 - Synpcc7942_0443 0.66 -0.5 433,918 - Synpcc7942_0443 0.68 -0.9 433,920 - Synpcc7942_0443 0.68 -1.5 433,957 - Synpcc7942_0443 0.71 +0.2 434,009 - Synpcc7942_0443 0.75 -1.0 434,104 + Synpcc7942_0443 0.83 -0.1 434,112 - Synpcc7942_0443 0.83 -1.6 434,153 - Synpcc7942_0443 0.87 -2.7 434,174 + Synpcc7942_0443 0.88 -0.6 434,182 - Synpcc7942_0443 0.89 -0.1 434,182 - Synpcc7942_0443 0.89 -1.9 434,182 - Synpcc7942_0443 0.89 +0.0 434,211 + -0.6 434,217 + +1.0 434,221 + -2.3 434,226 - +1.7 434,227 + +2.0 434,236 + -1.9 434,243 - -2.8 434,244 - -0.8 434,251 - -1.3 434,262 - -2.3 434,306 + -0.0 434,312 + -1.4 434,315 + +1.0 434,343 + -1.5 434,349 + -2.6 434,361 - -0.7 434,378 + -1.6 434,383 + -0.6 434,383 + -1.6 434,391 - -1.8 434,506 - Synpcc7942_0444 0.22 -0.6 434,516 + Synpcc7942_0444 0.23 -2.1 434,516 + Synpcc7942_0444 0.23 -0.0 434,516 + Synpcc7942_0444 0.23 +1.6 434,522 - Synpcc7942_0444 0.24 -0.9 434,523 + Synpcc7942_0444 0.24 -1.4 434,524 - Synpcc7942_0444 0.24 -2.5 434,524 - Synpcc7942_0444 0.24 -3.3 434,524 - Synpcc7942_0444 0.24 -2.3 434,526 + Synpcc7942_0444 0.25 -1.3 434,526 + Synpcc7942_0444 0.25 -2.0 434,528 + Synpcc7942_0444 0.25 +1.7 434,533 + Synpcc7942_0444 0.26 -0.4 434,534 - Synpcc7942_0444 0.26 -0.3 434,541 - Synpcc7942_0444 0.27 -0.0 434,567 - Synpcc7942_0444 0.31 -1.3 434,652 + Synpcc7942_0444 0.43 -1.8 434,660 - Synpcc7942_0444 0.44 +1.0 434,692 - Synpcc7942_0444 0.49 -1.7 434,731 - Synpcc7942_0444 0.55 -0.3 434,749 + Synpcc7942_0444 0.57 -1.5 434,754 - Synpcc7942_0444 0.58 -1.9 434,789 + Synpcc7942_0444 0.63 -0.6 434,846 - Synpcc7942_0444 0.71 -1.6 434,856 - Synpcc7942_0444 0.73 +0.2 434,875 + Synpcc7942_0444 0.76 -0.8 434,898 + Synpcc7942_0444 0.79 -2.2 434,948 + Synpcc7942_0444 0.86 -2.0 435,016 + -2.6 435,016 + -1.0 435,016 + -2.9 435,018 + -0.9 435,026 - -2.2 435,043 - -3.5 435,117 - -0.6 435,308 - +2.6 435,310 + +1.2 435,310 + +2.4 435,387 - -0.4 435,387 - -0.6 435,401 - +2.6 435,434 + -0.6 435,435 - -0.9 435,442 - -0.3 435,442 - +1.7 435,450 + -0.0 435,460 + +2.2 435,526 - oppC Synpcc7942_0445 0.14 -0.7 435,529 + oppC Synpcc7942_0445 0.14 -0.8 435,537 - -1.6 435,539 - oppC Synpcc7942_0445 0.15 +0.7 435,572 + oppC Synpcc7942_0445 0.18 +2.2 435,572 + oppC Synpcc7942_0445 0.18 -0.2 435,572 + oppC Synpcc7942_0445 0.18 -0.0 435,572 + oppC Synpcc7942_0445 0.18 -0.8 435,580 - oppC Synpcc7942_0445 0.19 +2.0 435,580 - oppC Synpcc7942_0445 0.19 +0.0 435,599 + oppC Synpcc7942_0445 0.20 -3.2 435,599 + oppC Synpcc7942_0445 0.20 -1.3 435,643 - oppC Synpcc7942_0445 0.25 +1.2 435,650 - oppC Synpcc7942_0445 0.25 -0.4 435,692 - oppC Synpcc7942_0445 0.29 -3.3 435,695 - oppC Synpcc7942_0445 0.30 -1.3 435,755 + oppC Synpcc7942_0445 0.35 +0.7 435,768 + oppC Synpcc7942_0445 0.36 -1.7 435,813 + oppC Synpcc7942_0445 0.41 +0.5 435,813 + oppC Synpcc7942_0445 0.41 -1.0 435,813 + oppC Synpcc7942_0445 0.41 -0.5 435,816 - oppC Synpcc7942_0445 0.41 -0.3 435,818 + oppC Synpcc7942_0445 0.41 -0.5 435,821 - oppC Synpcc7942_0445 0.41 -0.9 435,821 - oppC Synpcc7942_0445 0.41 -0.7 435,824 + oppC Synpcc7942_0445 0.42 -1.6 435,826 - oppC Synpcc7942_0445 0.42 -0.2 435,829 - oppC Synpcc7942_0445 0.42 -2.1 435,830 + oppC Synpcc7942_0445 0.42 -0.4 435,835 + oppC Synpcc7942_0445 0.43 +1.0 435,838 - oppC Synpcc7942_0445 0.43 -0.4 435,865 + oppC Synpcc7942_0445 0.46 -0.4 435,876 + oppC Synpcc7942_0445 0.47 -0.6 435,968 + oppC Synpcc7942_0445 0.55 -0.0 435,969 + oppC Synpcc7942_0445 0.55 -1.7 435,976 - oppC Synpcc7942_0445 0.56 +2.6 436,013 + oppC Synpcc7942_0445 0.60 +1.0 436,024 + oppC Synpcc7942_0445 0.61 +0.1 436,028 + oppC Synpcc7942_0445 0.61 -2.6
Or see this region's nucleotide sequence