Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0434 and Synpcc7942_0435 are separated by 10 nucleotides Synpcc7942_0435 and Synpcc7942_0436 are separated by 14 nucleotides Synpcc7942_0436 and Synpcc7942_0437 are separated by 312 nucleotides
Synpcc7942_0434: Synpcc7942_0434 - hypothetical protein, at 425,057 to 426,064
_0434
Synpcc7942_0435: Synpcc7942_0435 - hypothetical protein, at 426,075 to 426,830
_0435
Synpcc7942_0436: Synpcc7942_0436 - hypothetical protein, at 426,845 to 427,150
_0436
Synpcc7942_0437: Synpcc7942_0437 - putative glutathione peroxidase, at 427,463 to 428,029
_0437
Position (kb) 426
427 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 425.076 kb on + strand at 425.076 kb on + strand at 425.076 kb on + strand at 425.076 kb on + strand at 425.084 kb on - strand at 425.086 kb on + strand at 425.086 kb on + strand at 425.094 kb on - strand at 425.094 kb on - strand at 425.094 kb on - strand at 425.226 kb on + strand, within Synpcc7942_0434 at 425.263 kb on - strand, within Synpcc7942_0434 at 425.334 kb on + strand, within Synpcc7942_0434 at 425.339 kb on - strand, within Synpcc7942_0434 at 425.440 kb on + strand, within Synpcc7942_0434 at 425.646 kb on + strand, within Synpcc7942_0434 at 425.661 kb on - strand, within Synpcc7942_0434 at 425.675 kb on + strand, within Synpcc7942_0434 at 425.680 kb on + strand, within Synpcc7942_0434 at 425.680 kb on + strand, within Synpcc7942_0434 at 425.683 kb on - strand, within Synpcc7942_0434 at 425.683 kb on - strand, within Synpcc7942_0434 at 425.688 kb on - strand, within Synpcc7942_0434 at 425.688 kb on - strand, within Synpcc7942_0434 at 425.696 kb on + strand, within Synpcc7942_0434 at 425.733 kb on + strand, within Synpcc7942_0434 at 425.749 kb on + strand, within Synpcc7942_0434 at 425.757 kb on + strand, within Synpcc7942_0434 at 425.757 kb on + strand, within Synpcc7942_0434 at 425.757 kb on - strand, within Synpcc7942_0434 at 425.758 kb on - strand, within Synpcc7942_0434 at 425.758 kb on - strand, within Synpcc7942_0434 at 425.765 kb on - strand, within Synpcc7942_0434 at 425.772 kb on + strand, within Synpcc7942_0434 at 425.772 kb on + strand, within Synpcc7942_0434 at 425.772 kb on + strand, within Synpcc7942_0434 at 425.772 kb on + strand, within Synpcc7942_0434 at 425.780 kb on - strand, within Synpcc7942_0434 at 425.780 kb on - strand, within Synpcc7942_0434 at 425.780 kb on - strand, within Synpcc7942_0434 at 425.785 kb on - strand, within Synpcc7942_0434 at 425.795 kb on + strand, within Synpcc7942_0434 at 425.798 kb on - strand, within Synpcc7942_0434 at 425.798 kb on - strand, within Synpcc7942_0434 at 425.814 kb on + strand, within Synpcc7942_0434 at 425.840 kb on + strand, within Synpcc7942_0434 at 425.843 kb on - strand, within Synpcc7942_0434 at 425.917 kb on - strand, within Synpcc7942_0434 at 425.960 kb on - strand, within Synpcc7942_0434 at 425.988 kb on - strand at 426.039 kb on - strand at 426.052 kb on - strand at 426.076 kb on - strand at 426.078 kb on + strand at 426.080 kb on + strand at 426.097 kb on - strand at 426.124 kb on + strand at 426.132 kb on - strand at 426.146 kb on - strand at 426.161 kb on + strand, within Synpcc7942_0435 at 426.205 kb on + strand, within Synpcc7942_0435 at 426.209 kb on + strand, within Synpcc7942_0435 at 426.213 kb on - strand, within Synpcc7942_0435 at 426.213 kb on - strand, within Synpcc7942_0435 at 426.265 kb on + strand, within Synpcc7942_0435 at 426.326 kb on + strand, within Synpcc7942_0435 at 426.391 kb on + strand, within Synpcc7942_0435 at 426.404 kb on - strand, within Synpcc7942_0435 at 426.498 kb on - strand, within Synpcc7942_0435 at 426.503 kb on + strand, within Synpcc7942_0435 at 426.511 kb on + strand, within Synpcc7942_0435 at 426.518 kb on + strand, within Synpcc7942_0435 at 426.518 kb on + strand, within Synpcc7942_0435 at 426.519 kb on - strand, within Synpcc7942_0435 at 426.519 kb on - strand, within Synpcc7942_0435 at 426.519 kb on - strand, within Synpcc7942_0435 at 426.519 kb on - strand, within Synpcc7942_0435 at 426.523 kb on + strand, within Synpcc7942_0435 at 426.531 kb on - strand, within Synpcc7942_0435 at 426.544 kb on - strand, within Synpcc7942_0435 at 426.549 kb on - strand, within Synpcc7942_0435 at 426.568 kb on + strand, within Synpcc7942_0435 at 426.583 kb on + strand, within Synpcc7942_0435 at 426.591 kb on + strand, within Synpcc7942_0435 at 426.619 kb on + strand, within Synpcc7942_0435 at 426.619 kb on + strand, within Synpcc7942_0435 at 426.629 kb on + strand, within Synpcc7942_0435 at 426.642 kb on - strand, within Synpcc7942_0435 at 426.655 kb on - strand, within Synpcc7942_0435 at 426.656 kb on - strand, within Synpcc7942_0435 at 426.695 kb on + strand, within Synpcc7942_0435 at 426.703 kb on - strand, within Synpcc7942_0435 at 426.703 kb on - strand, within Synpcc7942_0435 at 426.708 kb on + strand, within Synpcc7942_0435 at 426.708 kb on + strand, within Synpcc7942_0435 at 426.716 kb on - strand, within Synpcc7942_0435 at 426.730 kb on + strand, within Synpcc7942_0435 at 426.740 kb on + strand, within Synpcc7942_0435 at 426.809 kb on + strand at 426.824 kb on - strand at 426.839 kb on + strand at 426.857 kb on + strand at 426.903 kb on - strand, within Synpcc7942_0436 at 427.011 kb on - strand, within Synpcc7942_0436 at 427.025 kb on - strand, within Synpcc7942_0436 at 427.027 kb on + strand, within Synpcc7942_0436 at 427.027 kb on + strand, within Synpcc7942_0436 at 427.027 kb on + strand, within Synpcc7942_0436 at 427.189 kb on - strand at 427.189 kb on - strand at 427.189 kb on - strand at 427.214 kb on - strand at 427.359 kb on - strand at 427.497 kb on - strand at 427.679 kb on - strand, within Synpcc7942_0437 at 427.729 kb on + strand, within Synpcc7942_0437
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 425,076 + +1.0 425,076 + +1.0 425,076 + +1.0 425,076 + -1.3 425,084 - -0.0 425,086 + +1.0 425,086 + +1.0 425,094 - -1.5 425,094 - -1.7 425,094 - -1.6 425,226 + Synpcc7942_0434 0.17 -0.8 425,263 - Synpcc7942_0434 0.20 +1.0 425,334 + Synpcc7942_0434 0.27 -2.2 425,339 - Synpcc7942_0434 0.28 -0.6 425,440 + Synpcc7942_0434 0.38 +0.6 425,646 + Synpcc7942_0434 0.58 +1.0 425,661 - Synpcc7942_0434 0.60 -1.9 425,675 + Synpcc7942_0434 0.61 +3.0 425,680 + Synpcc7942_0434 0.62 +1.0 425,680 + Synpcc7942_0434 0.62 -2.6 425,683 - Synpcc7942_0434 0.62 +0.6 425,683 - Synpcc7942_0434 0.62 -2.2 425,688 - Synpcc7942_0434 0.63 -0.6 425,688 - Synpcc7942_0434 0.63 +1.0 425,696 + Synpcc7942_0434 0.63 +1.0 425,733 + Synpcc7942_0434 0.67 -0.0 425,749 + Synpcc7942_0434 0.69 -3.3 425,757 + Synpcc7942_0434 0.69 +1.0 425,757 + Synpcc7942_0434 0.69 -0.6 425,757 - Synpcc7942_0434 0.69 -1.2 425,758 - Synpcc7942_0434 0.70 -0.6 425,758 - Synpcc7942_0434 0.70 -2.0 425,765 - Synpcc7942_0434 0.70 +1.0 425,772 + Synpcc7942_0434 0.71 -0.0 425,772 + Synpcc7942_0434 0.71 -0.0 425,772 + Synpcc7942_0434 0.71 -1.3 425,772 + Synpcc7942_0434 0.71 -1.8 425,780 - Synpcc7942_0434 0.72 +1.3 425,780 - Synpcc7942_0434 0.72 +1.0 425,780 - Synpcc7942_0434 0.72 -1.3 425,785 - Synpcc7942_0434 0.72 +1.0 425,795 + Synpcc7942_0434 0.73 +1.0 425,798 - Synpcc7942_0434 0.74 -0.6 425,798 - Synpcc7942_0434 0.74 -0.0 425,814 + Synpcc7942_0434 0.75 -0.6 425,840 + Synpcc7942_0434 0.78 -0.6 425,843 - Synpcc7942_0434 0.78 -1.5 425,917 - Synpcc7942_0434 0.85 +1.3 425,960 - Synpcc7942_0434 0.90 +1.0 425,988 - -0.6 426,039 - +1.0 426,052 - +1.0 426,076 - +2.6 426,078 + +1.0 426,080 + -0.2 426,097 - -0.2 426,124 + -1.0 426,132 - -1.0 426,146 - -1.3 426,161 + Synpcc7942_0435 0.11 +1.0 426,205 + Synpcc7942_0435 0.17 -2.7 426,209 + Synpcc7942_0435 0.18 -0.0 426,213 - Synpcc7942_0435 0.18 -1.0 426,213 - Synpcc7942_0435 0.18 -0.3 426,265 + Synpcc7942_0435 0.25 -1.8 426,326 + Synpcc7942_0435 0.33 +1.0 426,391 + Synpcc7942_0435 0.42 +1.0 426,404 - Synpcc7942_0435 0.44 -0.0 426,498 - Synpcc7942_0435 0.56 -3.7 426,503 + Synpcc7942_0435 0.57 -0.0 426,511 + Synpcc7942_0435 0.58 +1.0 426,518 + Synpcc7942_0435 0.59 -1.6 426,518 + Synpcc7942_0435 0.59 -2.2 426,519 - Synpcc7942_0435 0.59 -4.0 426,519 - Synpcc7942_0435 0.59 -1.0 426,519 - Synpcc7942_0435 0.59 +2.0 426,519 - Synpcc7942_0435 0.59 -0.0 426,523 + Synpcc7942_0435 0.59 -2.7 426,531 - Synpcc7942_0435 0.60 -0.6 426,544 - Synpcc7942_0435 0.62 +1.0 426,549 - Synpcc7942_0435 0.63 +1.0 426,568 + Synpcc7942_0435 0.65 +1.0 426,583 + Synpcc7942_0435 0.67 -0.0 426,591 + Synpcc7942_0435 0.68 +1.0 426,619 + Synpcc7942_0435 0.72 -0.6 426,619 + Synpcc7942_0435 0.72 +1.0 426,629 + Synpcc7942_0435 0.73 -0.0 426,642 - Synpcc7942_0435 0.75 -0.0 426,655 - Synpcc7942_0435 0.77 -1.5 426,656 - Synpcc7942_0435 0.77 -1.6 426,695 + Synpcc7942_0435 0.82 +1.0 426,703 - Synpcc7942_0435 0.83 -0.6 426,703 - Synpcc7942_0435 0.83 -0.8 426,708 + Synpcc7942_0435 0.84 -1.3 426,708 + Synpcc7942_0435 0.84 -1.8 426,716 - Synpcc7942_0435 0.85 -0.0 426,730 + Synpcc7942_0435 0.87 -1.0 426,740 + Synpcc7942_0435 0.88 -0.9 426,809 + -1.1 426,824 - -1.1 426,839 + -1.8 426,857 + +1.0 426,903 - Synpcc7942_0436 0.19 -1.4 427,011 - Synpcc7942_0436 0.54 -1.2 427,025 - Synpcc7942_0436 0.59 -1.6 427,027 + Synpcc7942_0436 0.59 -2.9 427,027 + Synpcc7942_0436 0.59 -0.7 427,027 + Synpcc7942_0436 0.59 -0.4 427,189 - +1.2 427,189 - -0.8 427,189 - -1.6 427,214 - -2.6 427,359 - +4.0 427,497 - +0.0 427,679 - Synpcc7942_0437 0.38 +1.7 427,729 + Synpcc7942_0437 0.47 -3.6
Or see this region's nucleotide sequence