Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0431 and Synpcc7942_0432 overlap by 11 nucleotides Synpcc7942_0432 and Synpcc7942_0433 are separated by 386 nucleotides
Synpcc7942_0431: Synpcc7942_0431 - hypothetical protein, at 421,289 to 422,557
_0431
Synpcc7942_0432: Synpcc7942_0432 - D-alanyl-D-alanine dipeptidase-like, at 422,547 to 423,245
_0432
Synpcc7942_0433: Synpcc7942_0433 - hypothetical protein, at 423,632 to 424,840
_0433
Position (kb) 422
423
424 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 421.591 kb on - strand, within Synpcc7942_0431 at 421.591 kb on - strand, within Synpcc7942_0431 at 421.654 kb on + strand, within Synpcc7942_0431 at 421.654 kb on - strand, within Synpcc7942_0431 at 421.664 kb on + strand, within Synpcc7942_0431 at 421.718 kb on + strand, within Synpcc7942_0431 at 421.719 kb on + strand, within Synpcc7942_0431 at 421.733 kb on - strand, within Synpcc7942_0431 at 421.733 kb on - strand, within Synpcc7942_0431 at 421.789 kb on + strand, within Synpcc7942_0431 at 421.789 kb on + strand, within Synpcc7942_0431 at 421.795 kb on - strand, within Synpcc7942_0431 at 421.797 kb on - strand, within Synpcc7942_0431 at 421.797 kb on - strand, within Synpcc7942_0431 at 421.797 kb on - strand, within Synpcc7942_0431 at 421.797 kb on - strand, within Synpcc7942_0431 at 421.830 kb on - strand, within Synpcc7942_0431 at 421.866 kb on + strand, within Synpcc7942_0431 at 421.866 kb on - strand, within Synpcc7942_0431 at 421.866 kb on - strand, within Synpcc7942_0431 at 421.876 kb on - strand, within Synpcc7942_0431 at 421.876 kb on - strand, within Synpcc7942_0431 at 421.896 kb on + strand, within Synpcc7942_0431 at 421.897 kb on + strand, within Synpcc7942_0431 at 421.897 kb on + strand, within Synpcc7942_0431 at 421.921 kb on + strand, within Synpcc7942_0431 at 421.921 kb on + strand, within Synpcc7942_0431 at 421.930 kb on - strand, within Synpcc7942_0431 at 421.962 kb on + strand, within Synpcc7942_0431 at 421.963 kb on + strand, within Synpcc7942_0431 at 421.963 kb on + strand, within Synpcc7942_0431 at 421.963 kb on + strand, within Synpcc7942_0431 at 421.963 kb on + strand, within Synpcc7942_0431 at 421.970 kb on - strand, within Synpcc7942_0431 at 421.970 kb on - strand, within Synpcc7942_0431 at 421.970 kb on - strand, within Synpcc7942_0431 at 421.971 kb on - strand, within Synpcc7942_0431 at 421.977 kb on - strand, within Synpcc7942_0431 at 422.005 kb on + strand, within Synpcc7942_0431 at 422.024 kb on + strand, within Synpcc7942_0431 at 422.054 kb on + strand, within Synpcc7942_0431 at 422.070 kb on - strand, within Synpcc7942_0431 at 422.075 kb on - strand, within Synpcc7942_0431 at 422.090 kb on + strand, within Synpcc7942_0431 at 422.098 kb on - strand, within Synpcc7942_0431 at 422.111 kb on - strand, within Synpcc7942_0431 at 422.150 kb on + strand, within Synpcc7942_0431 at 422.203 kb on - strand, within Synpcc7942_0431 at 422.213 kb on + strand, within Synpcc7942_0431 at 422.233 kb on - strand, within Synpcc7942_0431 at 422.237 kb on + strand, within Synpcc7942_0431 at 422.245 kb on - strand, within Synpcc7942_0431 at 422.252 kb on + strand, within Synpcc7942_0431 at 422.258 kb on - strand, within Synpcc7942_0431 at 422.270 kb on + strand, within Synpcc7942_0431 at 422.281 kb on + strand, within Synpcc7942_0431 at 422.286 kb on + strand, within Synpcc7942_0431 at 422.294 kb on + strand, within Synpcc7942_0431 at 422.320 kb on + strand, within Synpcc7942_0431 at 422.328 kb on - strand, within Synpcc7942_0431 at 422.328 kb on - strand, within Synpcc7942_0431 at 422.328 kb on - strand, within Synpcc7942_0431 at 422.330 kb on + strand, within Synpcc7942_0431 at 422.330 kb on + strand, within Synpcc7942_0431 at 422.332 kb on + strand, within Synpcc7942_0431 at 422.338 kb on - strand, within Synpcc7942_0431 at 422.342 kb on - strand, within Synpcc7942_0431 at 422.346 kb on - strand, within Synpcc7942_0431 at 422.358 kb on - strand, within Synpcc7942_0431 at 422.408 kb on + strand, within Synpcc7942_0431 at 422.408 kb on + strand, within Synpcc7942_0431 at 422.408 kb on - strand, within Synpcc7942_0431 at 422.409 kb on - strand, within Synpcc7942_0431 at 422.411 kb on - strand, within Synpcc7942_0431 at 422.413 kb on + strand, within Synpcc7942_0431 at 422.413 kb on + strand, within Synpcc7942_0431 at 422.421 kb on - strand, within Synpcc7942_0431 at 422.472 kb on + strand at 422.490 kb on - strand at 422.538 kb on + strand at 422.637 kb on + strand, within Synpcc7942_0432 at 422.642 kb on + strand, within Synpcc7942_0432 at 422.642 kb on + strand, within Synpcc7942_0432 at 422.642 kb on + strand, within Synpcc7942_0432 at 422.650 kb on - strand, within Synpcc7942_0432 at 422.650 kb on - strand, within Synpcc7942_0432 at 422.652 kb on + strand, within Synpcc7942_0432 at 422.655 kb on - strand, within Synpcc7942_0432 at 422.667 kb on - strand, within Synpcc7942_0432 at 422.683 kb on + strand, within Synpcc7942_0432 at 422.691 kb on - strand, within Synpcc7942_0432 at 422.698 kb on + strand, within Synpcc7942_0432 at 422.711 kb on - strand, within Synpcc7942_0432 at 422.744 kb on + strand, within Synpcc7942_0432 at 422.752 kb on - strand, within Synpcc7942_0432 at 422.752 kb on - strand, within Synpcc7942_0432 at 422.752 kb on - strand, within Synpcc7942_0432 at 422.757 kb on - strand, within Synpcc7942_0432 at 422.813 kb on + strand, within Synpcc7942_0432 at 422.818 kb on + strand, within Synpcc7942_0432 at 422.841 kb on + strand, within Synpcc7942_0432 at 422.841 kb on + strand, within Synpcc7942_0432 at 422.871 kb on - strand, within Synpcc7942_0432 at 422.878 kb on + strand, within Synpcc7942_0432 at 422.886 kb on - strand, within Synpcc7942_0432 at 422.886 kb on - strand, within Synpcc7942_0432 at 422.908 kb on - strand, within Synpcc7942_0432 at 422.908 kb on - strand, within Synpcc7942_0432 at 422.908 kb on - strand, within Synpcc7942_0432 at 422.908 kb on - strand, within Synpcc7942_0432 at 422.908 kb on - strand, within Synpcc7942_0432 at 422.908 kb on - strand, within Synpcc7942_0432 at 422.908 kb on - strand at 422.931 kb on + strand, within Synpcc7942_0432 at 422.992 kb on - strand, within Synpcc7942_0432 at 423.003 kb on + strand, within Synpcc7942_0432 at 423.008 kb on + strand, within Synpcc7942_0432 at 423.044 kb on + strand, within Synpcc7942_0432 at 423.044 kb on + strand, within Synpcc7942_0432 at 423.044 kb on + strand, within Synpcc7942_0432 at 423.083 kb on - strand, within Synpcc7942_0432 at 423.083 kb on - strand, within Synpcc7942_0432 at 423.110 kb on + strand, within Synpcc7942_0432 at 423.110 kb on + strand, within Synpcc7942_0432 at 423.113 kb on + strand, within Synpcc7942_0432 at 423.118 kb on - strand, within Synpcc7942_0432 at 423.126 kb on - strand, within Synpcc7942_0432 at 423.176 kb on + strand at 423.176 kb on + strand at 423.176 kb on + strand at 423.182 kb on + strand at 423.184 kb on - strand at 423.184 kb on - strand at 423.184 kb on - strand at 423.193 kb on + strand at 423.228 kb on + strand at 423.228 kb on + strand at 423.228 kb on + strand at 423.236 kb on - strand at 423.240 kb on + strand at 423.248 kb on - strand at 423.250 kb on + strand at 423.300 kb on + strand at 423.380 kb on + strand at 423.392 kb on + strand at 423.397 kb on + strand at 423.397 kb on + strand at 423.397 kb on + strand at 423.402 kb on + strand at 423.402 kb on + strand at 423.402 kb on + strand at 423.402 kb on + strand at 423.405 kb on - strand at 423.407 kb on - strand at 423.409 kb on + strand at 423.409 kb on + strand at 423.410 kb on - strand at 423.411 kb on + strand at 423.411 kb on + strand at 423.419 kb on - strand at 423.419 kb on - strand at 423.451 kb on + strand at 423.503 kb on + strand at 423.503 kb on + strand at 423.511 kb on - strand at 423.511 kb on - strand at 423.545 kb on + strand at 423.545 kb on + strand at 423.553 kb on - strand at 423.553 kb on - strand at 423.553 kb on - strand at 423.689 kb on + strand at 423.740 kb on + strand at 423.740 kb on + strand at 423.816 kb on - strand, within Synpcc7942_0433 at 423.887 kb on - strand, within Synpcc7942_0433 at 423.887 kb on - strand, within Synpcc7942_0433 at 423.887 kb on - strand, within Synpcc7942_0433 at 423.894 kb on + strand, within Synpcc7942_0433 at 423.894 kb on - strand, within Synpcc7942_0433 at 423.911 kb on - strand, within Synpcc7942_0433 at 423.913 kb on + strand, within Synpcc7942_0433 at 423.913 kb on + strand, within Synpcc7942_0433 at 423.925 kb on + strand, within Synpcc7942_0433 at 423.941 kb on - strand, within Synpcc7942_0433 at 423.951 kb on + strand, within Synpcc7942_0433 at 423.958 kb on + strand, within Synpcc7942_0433 at 423.958 kb on + strand, within Synpcc7942_0433 at 423.961 kb on - strand, within Synpcc7942_0433 at 423.963 kb on + strand, within Synpcc7942_0433 at 423.966 kb on - strand, within Synpcc7942_0433 at 423.986 kb on - strand, within Synpcc7942_0433 at 423.986 kb on - strand, within Synpcc7942_0433 at 423.986 kb on - strand, within Synpcc7942_0433 at 423.986 kb on - strand, within Synpcc7942_0433 at 423.990 kb on - strand, within Synpcc7942_0433 at 423.999 kb on - strand, within Synpcc7942_0433 at 423.999 kb on - strand, within Synpcc7942_0433 at 424.011 kb on + strand, within Synpcc7942_0433 at 424.013 kb on + strand, within Synpcc7942_0433 at 424.016 kb on - strand, within Synpcc7942_0433 at 424.023 kb on + strand, within Synpcc7942_0433 at 424.049 kb on - strand, within Synpcc7942_0433 at 424.061 kb on + strand, within Synpcc7942_0433 at 424.068 kb on - strand, within Synpcc7942_0433 at 424.069 kb on - strand, within Synpcc7942_0433 at 424.084 kb on + strand, within Synpcc7942_0433 at 424.127 kb on + strand, within Synpcc7942_0433 at 424.135 kb on - strand, within Synpcc7942_0433 at 424.137 kb on + strand, within Synpcc7942_0433 at 424.198 kb on + strand, within Synpcc7942_0433 at 424.198 kb on + strand, within Synpcc7942_0433 at 424.206 kb on - strand, within Synpcc7942_0433 at 424.214 kb on - strand, within Synpcc7942_0433 at 424.220 kb on + strand, within Synpcc7942_0433 at 424.228 kb on - strand, within Synpcc7942_0433 at 424.228 kb on - strand, within Synpcc7942_0433
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 421,591 - Synpcc7942_0431 0.24 -0.9 421,591 - Synpcc7942_0431 0.24 -0.1 421,654 + Synpcc7942_0431 0.29 -0.5 421,654 - Synpcc7942_0431 0.29 -0.9 421,664 + Synpcc7942_0431 0.30 -0.3 421,718 + Synpcc7942_0431 0.34 -0.2 421,719 + Synpcc7942_0431 0.34 -2.9 421,733 - Synpcc7942_0431 0.35 -0.9 421,733 - Synpcc7942_0431 0.35 +1.0 421,789 + Synpcc7942_0431 0.39 -3.6 421,789 + Synpcc7942_0431 0.39 +2.4 421,795 - Synpcc7942_0431 0.40 -0.4 421,797 - Synpcc7942_0431 0.40 -1.3 421,797 - Synpcc7942_0431 0.40 +0.3 421,797 - Synpcc7942_0431 0.40 +1.2 421,797 - Synpcc7942_0431 0.40 +3.9 421,830 - Synpcc7942_0431 0.43 -0.3 421,866 + Synpcc7942_0431 0.45 -0.6 421,866 - Synpcc7942_0431 0.45 -1.0 421,866 - Synpcc7942_0431 0.45 -0.8 421,876 - Synpcc7942_0431 0.46 -3.5 421,876 - Synpcc7942_0431 0.46 -0.0 421,896 + Synpcc7942_0431 0.48 +3.3 421,897 + Synpcc7942_0431 0.48 +1.3 421,897 + Synpcc7942_0431 0.48 +1.7 421,921 + Synpcc7942_0431 0.50 +0.4 421,921 + Synpcc7942_0431 0.50 -0.4 421,930 - Synpcc7942_0431 0.51 -2.2 421,962 + Synpcc7942_0431 0.53 -3.0 421,963 + Synpcc7942_0431 0.53 +1.5 421,963 + Synpcc7942_0431 0.53 -0.1 421,963 + Synpcc7942_0431 0.53 -1.1 421,963 + Synpcc7942_0431 0.53 +0.1 421,970 - Synpcc7942_0431 0.54 -0.3 421,970 - Synpcc7942_0431 0.54 -0.8 421,970 - Synpcc7942_0431 0.54 +0.6 421,971 - Synpcc7942_0431 0.54 +0.2 421,977 - Synpcc7942_0431 0.54 -2.6 422,005 + Synpcc7942_0431 0.56 +0.0 422,024 + Synpcc7942_0431 0.58 -2.8 422,054 + Synpcc7942_0431 0.60 -1.5 422,070 - Synpcc7942_0431 0.62 -3.1 422,075 - Synpcc7942_0431 0.62 +1.6 422,090 + Synpcc7942_0431 0.63 +7.2 422,098 - Synpcc7942_0431 0.64 +0.5 422,111 - Synpcc7942_0431 0.65 +0.0 422,150 + Synpcc7942_0431 0.68 -2.3 422,203 - Synpcc7942_0431 0.72 +1.5 422,213 + Synpcc7942_0431 0.73 -0.8 422,233 - Synpcc7942_0431 0.74 -0.9 422,237 + Synpcc7942_0431 0.75 -0.3 422,245 - Synpcc7942_0431 0.75 +1.0 422,252 + Synpcc7942_0431 0.76 -0.1 422,258 - Synpcc7942_0431 0.76 -2.1 422,270 + Synpcc7942_0431 0.77 +2.5 422,281 + Synpcc7942_0431 0.78 +0.1 422,286 + Synpcc7942_0431 0.79 +1.7 422,294 + Synpcc7942_0431 0.79 -0.3 422,320 + Synpcc7942_0431 0.81 +1.0 422,328 - Synpcc7942_0431 0.82 -1.3 422,328 - Synpcc7942_0431 0.82 -3.0 422,328 - Synpcc7942_0431 0.82 -3.4 422,330 + Synpcc7942_0431 0.82 -2.6 422,330 + Synpcc7942_0431 0.82 -2.4 422,332 + Synpcc7942_0431 0.82 +2.3 422,338 - Synpcc7942_0431 0.83 -0.5 422,342 - Synpcc7942_0431 0.83 +2.2 422,346 - Synpcc7942_0431 0.83 -1.6 422,358 - Synpcc7942_0431 0.84 -2.5 422,408 + Synpcc7942_0431 0.88 -1.2 422,408 + Synpcc7942_0431 0.88 -2.9 422,408 - Synpcc7942_0431 0.88 -0.7 422,409 - Synpcc7942_0431 0.88 -0.2 422,411 - Synpcc7942_0431 0.88 -0.8 422,413 + Synpcc7942_0431 0.89 -0.4 422,413 + Synpcc7942_0431 0.89 +1.6 422,421 - Synpcc7942_0431 0.89 -0.4 422,472 + +0.4 422,490 - +1.1 422,538 + -1.8 422,637 + Synpcc7942_0432 0.13 -2.1 422,642 + Synpcc7942_0432 0.14 -2.6 422,642 + Synpcc7942_0432 0.14 -1.8 422,642 + Synpcc7942_0432 0.14 -1.0 422,650 - Synpcc7942_0432 0.15 -1.9 422,650 - Synpcc7942_0432 0.15 +1.5 422,652 + Synpcc7942_0432 0.15 -1.0 422,655 - Synpcc7942_0432 0.15 -0.6 422,667 - Synpcc7942_0432 0.17 -2.7 422,683 + Synpcc7942_0432 0.19 +2.2 422,691 - Synpcc7942_0432 0.21 +1.0 422,698 + Synpcc7942_0432 0.22 +3.0 422,711 - Synpcc7942_0432 0.23 -2.3 422,744 + Synpcc7942_0432 0.28 -3.3 422,752 - Synpcc7942_0432 0.29 -1.8 422,752 - Synpcc7942_0432 0.29 -1.3 422,752 - Synpcc7942_0432 0.29 -1.8 422,757 - Synpcc7942_0432 0.30 +1.0 422,813 + Synpcc7942_0432 0.38 +2.0 422,818 + Synpcc7942_0432 0.39 -2.6 422,841 + Synpcc7942_0432 0.42 -0.9 422,841 + Synpcc7942_0432 0.42 -2.3 422,871 - Synpcc7942_0432 0.46 -2.4 422,878 + Synpcc7942_0432 0.47 +2.6 422,886 - Synpcc7942_0432 0.48 -1.7 422,886 - Synpcc7942_0432 0.48 -2.4 422,908 - Synpcc7942_0432 0.52 +2.3 422,908 - Synpcc7942_0432 0.52 -1.2 422,908 - Synpcc7942_0432 0.52 -0.5 422,908 - Synpcc7942_0432 0.52 +2.0 422,908 - Synpcc7942_0432 0.52 +1.3 422,908 - Synpcc7942_0432 0.52 -3.6 422,908 - +2.0 422,931 + Synpcc7942_0432 0.55 -1.6 422,992 - Synpcc7942_0432 0.64 -2.2 423,003 + Synpcc7942_0432 0.65 -1.8 423,008 + Synpcc7942_0432 0.66 -1.4 423,044 + Synpcc7942_0432 0.71 -2.5 423,044 + Synpcc7942_0432 0.71 -0.8 423,044 + Synpcc7942_0432 0.71 -0.0 423,083 - Synpcc7942_0432 0.77 -0.0 423,083 - Synpcc7942_0432 0.77 +0.8 423,110 + Synpcc7942_0432 0.81 -1.1 423,110 + Synpcc7942_0432 0.81 -3.1 423,113 + Synpcc7942_0432 0.81 -1.2 423,118 - Synpcc7942_0432 0.82 -3.1 423,126 - Synpcc7942_0432 0.83 -1.5 423,176 + -2.4 423,176 + +1.8 423,176 + +1.7 423,182 + -1.2 423,184 - +3.8 423,184 - +3.0 423,184 - -1.4 423,193 + -1.1 423,228 + +2.5 423,228 + -1.6 423,228 + -0.2 423,236 - -0.3 423,240 + -1.4 423,248 - -1.4 423,250 + +3.0 423,300 + +1.0 423,380 + +0.7 423,392 + +2.0 423,397 + -0.5 423,397 + -0.0 423,397 + -0.2 423,402 + -1.0 423,402 + -1.3 423,402 + +1.2 423,402 + -0.0 423,405 - +2.1 423,407 - +1.0 423,409 + +1.6 423,409 + -2.5 423,410 - -0.6 423,411 + -1.2 423,411 + -0.2 423,419 - -0.0 423,419 - -1.2 423,451 + +3.0 423,503 + +2.1 423,503 + -1.4 423,511 - -0.3 423,511 - -0.0 423,545 + +0.3 423,545 + -1.1 423,553 - -1.1 423,553 - +1.3 423,553 - +2.0 423,689 + -0.3 423,740 + -1.3 423,740 + +1.0 423,816 - Synpcc7942_0433 0.15 -0.4 423,887 - Synpcc7942_0433 0.21 -0.4 423,887 - Synpcc7942_0433 0.21 -1.6 423,887 - Synpcc7942_0433 0.21 +0.4 423,894 + Synpcc7942_0433 0.22 -1.4 423,894 - Synpcc7942_0433 0.22 +1.0 423,911 - Synpcc7942_0433 0.23 -2.0 423,913 + Synpcc7942_0433 0.23 -1.6 423,913 + Synpcc7942_0433 0.23 -1.9 423,925 + Synpcc7942_0433 0.24 -0.4 423,941 - Synpcc7942_0433 0.26 +0.7 423,951 + Synpcc7942_0433 0.26 -0.7 423,958 + Synpcc7942_0433 0.27 +1.0 423,958 + Synpcc7942_0433 0.27 +0.2 423,961 - Synpcc7942_0433 0.27 -0.3 423,963 + Synpcc7942_0433 0.27 -2.9 423,966 - Synpcc7942_0433 0.28 -1.0 423,986 - Synpcc7942_0433 0.29 +0.4 423,986 - Synpcc7942_0433 0.29 -1.0 423,986 - Synpcc7942_0433 0.29 -0.4 423,986 - Synpcc7942_0433 0.29 -0.3 423,990 - Synpcc7942_0433 0.30 +0.1 423,999 - Synpcc7942_0433 0.30 -2.4 423,999 - Synpcc7942_0433 0.30 -0.6 424,011 + Synpcc7942_0433 0.31 +0.2 424,013 + Synpcc7942_0433 0.32 -2.0 424,016 - Synpcc7942_0433 0.32 -1.7 424,023 + Synpcc7942_0433 0.32 +0.3 424,049 - Synpcc7942_0433 0.34 -0.5 424,061 + Synpcc7942_0433 0.35 -3.5 424,068 - Synpcc7942_0433 0.36 -2.1 424,069 - Synpcc7942_0433 0.36 +0.7 424,084 + Synpcc7942_0433 0.37 +0.4 424,127 + Synpcc7942_0433 0.41 +1.0 424,135 - Synpcc7942_0433 0.42 +1.0 424,137 + Synpcc7942_0433 0.42 -2.0 424,198 + Synpcc7942_0433 0.47 +3.1 424,198 + Synpcc7942_0433 0.47 +0.6 424,206 - Synpcc7942_0433 0.47 -2.0 424,214 - Synpcc7942_0433 0.48 -1.2 424,220 + Synpcc7942_0433 0.49 +1.6 424,228 - Synpcc7942_0433 0.49 +2.7 424,228 - Synpcc7942_0433 0.49 +0.1
Or see this region's nucleotide sequence