Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0380 and Synpcc7942_0381 are separated by 203 nucleotides Synpcc7942_0381 and Synpcc7942_0382 are separated by 109 nucleotides Synpcc7942_0382 and Synpcc7942_0383 are separated by 39 nucleotides Synpcc7942_0383 and Synpcc7942_0384 are separated by 78 nucleotides Synpcc7942_0384 and chlP are separated by 83 nucleotides
Synpcc7942_0380: Synpcc7942_0380 - hypothetical protein, at 373,785 to 374,828
_0380
Synpcc7942_0381: Synpcc7942_0381 - hypothetical protein, at 375,032 to 375,346
_0381
Synpcc7942_0382: Synpcc7942_0382 - hypothetical protein, at 375,456 to 375,722
_0382
Synpcc7942_0383: Synpcc7942_0383 - hypothetical protein, at 375,762 to 376,448
_0383
Synpcc7942_0384: Synpcc7942_0384 - hypothetical protein, at 376,527 to 377,237
_0384
Synpcc7942_0385: chlP - geranylgeranyl reductase, at 377,321 to 378,694
chlP
Position (kb) 375
376
377 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 374.812 kb on + strand at 374.832 kb on + strand at 374.850 kb on - strand at 374.924 kb on + strand at 374.928 kb on + strand at 374.969 kb on - strand at 374.970 kb on + strand at 374.978 kb on + strand at 374.990 kb on + strand at 375.025 kb on + strand at 375.030 kb on + strand at 375.030 kb on + strand at 375.056 kb on - strand at 375.083 kb on + strand, within Synpcc7942_0381 at 375.091 kb on - strand, within Synpcc7942_0381 at 375.109 kb on + strand, within Synpcc7942_0381 at 375.115 kb on + strand, within Synpcc7942_0381 at 375.117 kb on - strand, within Synpcc7942_0381 at 375.123 kb on - strand, within Synpcc7942_0381 at 375.137 kb on + strand, within Synpcc7942_0381 at 375.203 kb on - strand, within Synpcc7942_0381 at 375.222 kb on + strand, within Synpcc7942_0381 at 375.247 kb on + strand, within Synpcc7942_0381 at 375.251 kb on + strand, within Synpcc7942_0381 at 375.259 kb on - strand, within Synpcc7942_0381 at 375.262 kb on + strand, within Synpcc7942_0381 at 375.270 kb on - strand, within Synpcc7942_0381 at 375.309 kb on - strand, within Synpcc7942_0381 at 375.309 kb on - strand, within Synpcc7942_0381 at 375.318 kb on + strand at 375.318 kb on + strand at 375.318 kb on + strand at 375.318 kb on + strand at 375.326 kb on - strand at 375.326 kb on - strand at 375.352 kb on - strand at 375.354 kb on + strand at 375.378 kb on + strand at 375.383 kb on + strand at 375.386 kb on - strand at 375.386 kb on - strand at 375.388 kb on - strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.529 kb on + strand, within Synpcc7942_0382 at 375.557 kb on - strand, within Synpcc7942_0382 at 375.584 kb on - strand, within Synpcc7942_0382 at 375.770 kb on + strand at 375.770 kb on + strand at 375.880 kb on + strand, within Synpcc7942_0383 at 375.899 kb on - strand, within Synpcc7942_0383 at 375.954 kb on + strand, within Synpcc7942_0383 at 375.962 kb on - strand, within Synpcc7942_0383 at 375.971 kb on + strand, within Synpcc7942_0383 at 375.979 kb on - strand, within Synpcc7942_0383 at 376.064 kb on + strand, within Synpcc7942_0383 at 376.064 kb on + strand, within Synpcc7942_0383 at 376.064 kb on + strand, within Synpcc7942_0383 at 376.072 kb on - strand, within Synpcc7942_0383 at 376.085 kb on - strand, within Synpcc7942_0383 at 376.244 kb on + strand, within Synpcc7942_0383 at 376.254 kb on - strand, within Synpcc7942_0383 at 376.337 kb on + strand at 376.614 kb on + strand, within Synpcc7942_0384 at 376.627 kb on - strand, within Synpcc7942_0384 at 376.633 kb on - strand, within Synpcc7942_0384 at 376.653 kb on + strand, within Synpcc7942_0384 at 376.658 kb on + strand, within Synpcc7942_0384 at 376.661 kb on - strand, within Synpcc7942_0384 at 376.661 kb on - strand, within Synpcc7942_0384 at 376.661 kb on - strand, within Synpcc7942_0384 at 376.661 kb on - strand, within Synpcc7942_0384 at 376.661 kb on - strand, within Synpcc7942_0384 at 376.661 kb on - strand at 376.666 kb on - strand, within Synpcc7942_0384 at 376.722 kb on + strand, within Synpcc7942_0384 at 376.730 kb on - strand, within Synpcc7942_0384 at 376.743 kb on - strand, within Synpcc7942_0384 at 376.798 kb on - strand, within Synpcc7942_0384 at 376.834 kb on + strand, within Synpcc7942_0384 at 376.882 kb on - strand, within Synpcc7942_0384 at 376.898 kb on - strand, within Synpcc7942_0384 at 376.900 kb on + strand, within Synpcc7942_0384 at 376.900 kb on + strand, within Synpcc7942_0384 at 376.926 kb on + strand, within Synpcc7942_0384 at 376.931 kb on + strand at 376.934 kb on - strand, within Synpcc7942_0384 at 376.934 kb on - strand, within Synpcc7942_0384 at 376.947 kb on - strand, within Synpcc7942_0384 at 376.957 kb on + strand, within Synpcc7942_0384 at 377.050 kb on + strand, within Synpcc7942_0384 at 377.050 kb on + strand, within Synpcc7942_0384 at 377.055 kb on + strand, within Synpcc7942_0384 at 377.055 kb on + strand, within Synpcc7942_0384 at 377.055 kb on + strand, within Synpcc7942_0384 at 377.101 kb on - strand, within Synpcc7942_0384 at 377.103 kb on + strand, within Synpcc7942_0384 at 377.109 kb on + strand, within Synpcc7942_0384 at 377.158 kb on - strand, within Synpcc7942_0384 at 377.181 kb on + strand at 377.220 kb on - strand at 377.240 kb on - strand at 377.241 kb on - strand at 377.243 kb on - strand at 377.264 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 374,812 + -0.7 374,832 + -0.7 374,850 - -2.1 374,924 + +0.8 374,928 + +3.5 374,969 - -0.7 374,970 + -0.9 374,978 + +0.6 374,990 + -0.6 375,025 + -0.1 375,030 + -0.0 375,030 + -0.2 375,056 - +2.5 375,083 + Synpcc7942_0381 0.16 -1.4 375,091 - Synpcc7942_0381 0.19 -1.1 375,109 + Synpcc7942_0381 0.24 +0.7 375,115 + Synpcc7942_0381 0.26 +1.3 375,117 - Synpcc7942_0381 0.27 +2.0 375,123 - Synpcc7942_0381 0.29 -0.2 375,137 + Synpcc7942_0381 0.33 +1.0 375,203 - Synpcc7942_0381 0.54 +0.4 375,222 + Synpcc7942_0381 0.60 -2.1 375,247 + Synpcc7942_0381 0.68 +1.0 375,251 + Synpcc7942_0381 0.70 -2.9 375,259 - Synpcc7942_0381 0.72 -1.6 375,262 + Synpcc7942_0381 0.73 +1.4 375,270 - Synpcc7942_0381 0.76 -0.7 375,309 - Synpcc7942_0381 0.88 -2.2 375,309 - Synpcc7942_0381 0.88 +2.0 375,318 + +3.0 375,318 + +2.8 375,318 + -1.2 375,318 + +1.0 375,326 - -0.0 375,326 - +0.1 375,352 - +0.4 375,354 + -1.8 375,378 + -0.0 375,383 + -1.6 375,386 - -2.5 375,386 - +1.0 375,388 - +0.3 375,393 + +2.0 375,393 + +0.5 375,393 + -0.9 375,393 + -0.0 375,393 + +1.8 375,393 + +0.4 375,393 + +0.5 375,393 + -2.2 375,393 + +2.0 375,401 - -0.4 375,401 - +1.0 375,401 - -1.0 375,401 - +0.2 375,401 - -2.3 375,401 - -2.8 375,401 - -3.0 375,529 + Synpcc7942_0382 0.27 -1.0 375,557 - Synpcc7942_0382 0.38 +0.7 375,584 - Synpcc7942_0382 0.48 +0.6 375,770 + -1.9 375,770 + -0.7 375,880 + Synpcc7942_0383 0.17 -1.6 375,899 - Synpcc7942_0383 0.20 -0.6 375,954 + Synpcc7942_0383 0.28 -2.3 375,962 - Synpcc7942_0383 0.29 +2.4 375,971 + Synpcc7942_0383 0.30 -1.6 375,979 - Synpcc7942_0383 0.32 +1.0 376,064 + Synpcc7942_0383 0.44 -0.8 376,064 + Synpcc7942_0383 0.44 -0.4 376,064 + Synpcc7942_0383 0.44 -0.8 376,072 - Synpcc7942_0383 0.45 -1.5 376,085 - Synpcc7942_0383 0.47 -2.1 376,244 + Synpcc7942_0383 0.70 -2.2 376,254 - Synpcc7942_0383 0.72 +1.6 376,337 + -1.6 376,614 + Synpcc7942_0384 0.12 +2.3 376,627 - Synpcc7942_0384 0.14 +1.5 376,633 - Synpcc7942_0384 0.15 +1.0 376,653 + Synpcc7942_0384 0.18 -1.7 376,658 + Synpcc7942_0384 0.18 +1.0 376,661 - Synpcc7942_0384 0.19 -0.2 376,661 - Synpcc7942_0384 0.19 +0.0 376,661 - Synpcc7942_0384 0.19 +1.0 376,661 - Synpcc7942_0384 0.19 +1.5 376,661 - Synpcc7942_0384 0.19 -1.0 376,661 - -0.9 376,666 - Synpcc7942_0384 0.20 -0.8 376,722 + Synpcc7942_0384 0.27 -0.7 376,730 - Synpcc7942_0384 0.29 +2.3 376,743 - Synpcc7942_0384 0.30 -1.1 376,798 - Synpcc7942_0384 0.38 -1.6 376,834 + Synpcc7942_0384 0.43 -1.0 376,882 - Synpcc7942_0384 0.50 +1.7 376,898 - Synpcc7942_0384 0.52 +1.3 376,900 + Synpcc7942_0384 0.52 -1.2 376,900 + Synpcc7942_0384 0.52 +1.0 376,926 + Synpcc7942_0384 0.56 +1.4 376,931 + +1.0 376,934 - Synpcc7942_0384 0.57 +1.1 376,934 - Synpcc7942_0384 0.57 -2.0 376,947 - Synpcc7942_0384 0.59 +1.4 376,957 + Synpcc7942_0384 0.60 +1.0 377,050 + Synpcc7942_0384 0.74 +2.5 377,050 + Synpcc7942_0384 0.74 -3.8 377,055 + Synpcc7942_0384 0.74 -1.7 377,055 + Synpcc7942_0384 0.74 -1.0 377,055 + Synpcc7942_0384 0.74 -1.0 377,101 - Synpcc7942_0384 0.81 -1.6 377,103 + Synpcc7942_0384 0.81 -0.6 377,109 + Synpcc7942_0384 0.82 -0.3 377,158 - Synpcc7942_0384 0.89 -0.9 377,181 + -0.2 377,220 - -0.0 377,240 - +0.6 377,241 - -0.4 377,243 - +2.3 377,264 + -0.7
Or see this region's nucleotide sequence