Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0358

Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntictB and dc13 are separated by 30 nucleotidesdc13 and Synpcc7942_0359 are separated by 75 nucleotides Synpcc7942_0357: ictB - Inorganic carbon transporter, at 349,875 to 351,278 ictB Synpcc7942_0358: dc13 - tRNA (guanine-N(7))-methyltransferase, at 351,309 to 351,950 dc13 Synpcc7942_0359: Synpcc7942_0359 - hypothetical protein, at 352,026 to 353,207 _0359 Position (kb) 351 352Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 351.282 kb on - strandat 351.287 kb on + strandat 351.299 kb on + strandat 351.300 kb on + strandat 351.305 kb on - strandat 351.307 kb on + strandat 351.331 kb on - strandat 351.340 kb on + strandat 351.343 kb on - strandat 351.456 kb on + strand, within dc13at 351.505 kb on - strand, within dc13at 351.506 kb on + strand, within dc13at 351.514 kb on - strand, within dc13at 351.529 kb on + strand, within dc13at 351.613 kb on - strand, within dc13at 351.618 kb on - strand, within dc13at 351.618 kb on - strand, within dc13at 351.678 kb on + strand, within dc13at 351.704 kb on + strand, within dc13at 351.704 kb on + strand, within dc13at 351.710 kb on - strandat 351.788 kb on - strand, within dc13at 351.788 kb on - strand, within dc13at 351.789 kb on - strandat 351.867 kb on - strand, within dc13at 351.867 kb on - strand, within dc13at 351.867 kb on - strand, within dc13at 351.869 kb on + strand, within dc13at 351.874 kb on - strand, within dc13at 351.893 kb on - strandat 351.894 kb on - strandat 351.927 kb on - strandat 351.935 kb on + strandat 351.960 kb on + strandat 351.981 kb on + strandat 351.983 kb on - strandat 351.986 kb on + strandat 351.989 kb on - strandat 351.999 kb on - strandat 352.011 kb on + strandat 352.019 kb on - strandat 352.031 kb on - strandat 352.052 kb on + strandat 352.052 kb on + strandat 352.052 kb on + strandat 352.060 kb on - strandat 352.060 kb on - strandat 352.074 kb on - strandat 352.126 kb on + strandat 352.145 kb on + strand, within Synpcc7942_0359at 352.145 kb on + strand, within Synpcc7942_0359at 352.149 kb on - strand, within Synpcc7942_0359at 352.180 kb on + strand, within Synpcc7942_0359at 352.197 kb on + strand, within Synpcc7942_0359at 352.206 kb on - strand, within Synpcc7942_0359at 352.259 kb on + strand, within Synpcc7942_0359at 352.267 kb on - strand, within Synpcc7942_0359at 352.268 kb on + strand, within Synpcc7942_0359at 352.268 kb on + strand, within Synpcc7942_0359at 352.273 kb on + strand, within Synpcc7942_0359at 352.276 kb on - strand, within Synpcc7942_0359at 352.277 kb on - strand, within Synpcc7942_0359at 352.281 kb on - strand, within Synpcc7942_0359at 352.281 kb on - strand, within Synpcc7942_0359at 352.324 kb on + strand, within Synpcc7942_0359at 352.339 kb on + strand, within Synpcc7942_0359at 352.394 kb on - strand, within Synpcc7942_0359at 352.402 kb on - strand, within Synpcc7942_0359at 352.413 kb on + strand, within Synpcc7942_0359at 352.533 kb on + strand, within Synpcc7942_0359at 352.533 kb on + strand, within Synpcc7942_0359at 352.541 kb on - strand, within Synpcc7942_0359at 352.541 kb on - strand, within Synpcc7942_0359at 352.546 kb on - strand, within Synpcc7942_0359at 352.563 kb on + strand, within Synpcc7942_0359at 352.563 kb on + strand, within Synpcc7942_0359at 352.563 kb on + strand, within Synpcc7942_0359at 352.571 kb on - strand, within Synpcc7942_0359at 352.571 kb on - strand, within Synpcc7942_0359at 352.590 kb on - strand, within Synpcc7942_0359at 352.607 kb on + strand, within Synpcc7942_0359at 352.607 kb on + strand, within Synpcc7942_0359at 352.664 kb on - strand, within Synpcc7942_0359at 352.665 kb on + strand, within Synpcc7942_0359at 352.670 kb on + strand, within Synpcc7942_0359at 352.683 kb on - strand, within Synpcc7942_0359at 352.692 kb on + strand, within Synpcc7942_0359at 352.723 kb on + strand, within Synpcc7942_0359at 352.728 kb on - strand, within Synpcc7942_0359at 352.736 kb on - strand, within Synpcc7942_0359at 352.753 kb on + strand, within Synpcc7942_0359at 352.754 kb on + strand, within Synpcc7942_0359at 352.769 kb on + strand, within Synpcc7942_0359at 352.769 kb on + strand, within Synpcc7942_0359at 352.777 kb on - strand, within Synpcc7942_0359at 352.785 kb on - strand, within Synpcc7942_0359at 352.786 kb on - strand, within Synpcc7942_0359at 352.874 kb on + strand, within Synpcc7942_0359at 352.895 kb on + strand, within Synpcc7942_0359at 352.898 kb on - strand, within Synpcc7942_0359

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1
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351,282 - +1.0
351,287 + -1.4
351,299 + -1.4
351,300 + +1.5
351,305 - +0.7
351,307 + -1.4
351,331 - +0.2
351,340 + +0.5
351,343 - -1.3
351,456 + dc13 Synpcc7942_0358 0.23 -0.0
351,505 - dc13 Synpcc7942_0358 0.31 -2.0
351,506 + dc13 Synpcc7942_0358 0.31 -2.3
351,514 - dc13 Synpcc7942_0358 0.32 -1.6
351,529 + dc13 Synpcc7942_0358 0.34 -0.0
351,613 - dc13 Synpcc7942_0358 0.47 -1.9
351,618 - dc13 Synpcc7942_0358 0.48 -0.6
351,618 - dc13 Synpcc7942_0358 0.48 -0.3
351,678 + dc13 Synpcc7942_0358 0.57 -0.5
351,704 + dc13 Synpcc7942_0358 0.62 -0.9
351,704 + dc13 Synpcc7942_0358 0.62 -0.6
351,710 - +1.0
351,788 - dc13 Synpcc7942_0358 0.75 -0.4
351,788 - dc13 Synpcc7942_0358 0.75 -1.4
351,789 - -1.6
351,867 - dc13 Synpcc7942_0358 0.87 -2.5
351,867 - dc13 Synpcc7942_0358 0.87 -2.0
351,867 - dc13 Synpcc7942_0358 0.87 +1.0
351,869 + dc13 Synpcc7942_0358 0.87 -0.6
351,874 - dc13 Synpcc7942_0358 0.88 -0.3
351,893 - +0.8
351,894 - -0.6
351,927 - -0.0
351,935 + -1.4
351,960 + -0.5
351,981 + +0.6
351,983 - -1.2
351,986 + -0.5
351,989 - +1.0
351,999 - +1.0
352,011 + -0.6
352,019 - -1.4
352,031 - -1.5
352,052 + -4.0
352,052 + -1.4
352,052 + -1.0
352,060 - +1.6
352,060 - -0.9
352,074 - -0.0
352,126 + -0.4
352,145 + Synpcc7942_0359 0.10 -0.5
352,145 + Synpcc7942_0359 0.10 +1.8
352,149 - Synpcc7942_0359 0.10 -0.2
352,180 + Synpcc7942_0359 0.13 -2.4
352,197 + Synpcc7942_0359 0.14 -2.6
352,206 - Synpcc7942_0359 0.15 -0.7
352,259 + Synpcc7942_0359 0.20 -2.2
352,267 - Synpcc7942_0359 0.20 -0.3
352,268 + Synpcc7942_0359 0.20 -3.7
352,268 + Synpcc7942_0359 0.20 +1.0
352,273 + Synpcc7942_0359 0.21 -1.7
352,276 - Synpcc7942_0359 0.21 +1.5
352,277 - Synpcc7942_0359 0.21 -0.9
352,281 - Synpcc7942_0359 0.22 +1.7
352,281 - Synpcc7942_0359 0.22 -2.8
352,324 + Synpcc7942_0359 0.25 -2.7
352,339 + Synpcc7942_0359 0.26 -2.0
352,394 - Synpcc7942_0359 0.31 +0.6
352,402 - Synpcc7942_0359 0.32 -2.2
352,413 + Synpcc7942_0359 0.33 +2.0
352,533 + Synpcc7942_0359 0.43 -0.8
352,533 + Synpcc7942_0359 0.43 -1.2
352,541 - Synpcc7942_0359 0.44 -0.8
352,541 - Synpcc7942_0359 0.44 -1.4
352,546 - Synpcc7942_0359 0.44 -3.5
352,563 + Synpcc7942_0359 0.45 -1.2
352,563 + Synpcc7942_0359 0.45 -0.8
352,563 + Synpcc7942_0359 0.45 +0.1
352,571 - Synpcc7942_0359 0.46 -2.3
352,571 - Synpcc7942_0359 0.46 -0.2
352,590 - Synpcc7942_0359 0.48 +1.2
352,607 + Synpcc7942_0359 0.49 -0.7
352,607 + Synpcc7942_0359 0.49 -0.0
352,664 - Synpcc7942_0359 0.54 -2.3
352,665 + Synpcc7942_0359 0.54 -0.5
352,670 + Synpcc7942_0359 0.54 +1.0
352,683 - Synpcc7942_0359 0.56 +2.0
352,692 + Synpcc7942_0359 0.56 -2.1
352,723 + Synpcc7942_0359 0.59 +3.3
352,728 - Synpcc7942_0359 0.59 -1.0
352,736 - Synpcc7942_0359 0.60 +3.3
352,753 + Synpcc7942_0359 0.62 +3.0
352,754 + Synpcc7942_0359 0.62 -1.1
352,769 + Synpcc7942_0359 0.63 -2.5
352,769 + Synpcc7942_0359 0.63 -0.5
352,777 - Synpcc7942_0359 0.64 -0.2
352,785 - Synpcc7942_0359 0.64 -2.0
352,786 - Synpcc7942_0359 0.64 +1.0
352,874 + Synpcc7942_0359 0.72 -2.7
352,895 + Synpcc7942_0359 0.74 -2.4
352,898 - Synpcc7942_0359 0.74 +2.1

Or see this region's nucleotide sequence