Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0291

Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpyrD and tRNA-Ala are separated by 20 nucleotidestRNA-Ala and Synpcc7942_0291 are separated by 79 nucleotidesSynpcc7942_0291 and dfp are separated by 3 nucleotides Synpcc7942_0290: pyrD - dihydroorotate dehydrogenase 2, at 287,003 to 288,139 pyrD Synpcc7942_R0030: tRNA-Ala - tRNA-Ala, at 288,160 to 288,232 tRNA-Ala Synpcc7942_0291: Synpcc7942_0291 - hypothetical protein, at 288,312 to 288,530 _0291 Synpcc7942_0292: dfp - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase, at 288,534 to 289,760 dfp Position (kb) 288 289Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 288.259 kb on - strandat 288.274 kb on + strandat 288.314 kb on + strandat 288.400 kb on - strand, within Synpcc7942_0291at 288.437 kb on - strand, within Synpcc7942_0291at 288.447 kb on - strand, within Synpcc7942_0291at 288.482 kb on - strand, within Synpcc7942_0291at 288.513 kb on - strandat 288.513 kb on - strandat 288.532 kb on - strandat 288.532 kb on - strandat 288.532 kb on - strandat 288.536 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1
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288,259 - +1.0
288,274 + +1.6
288,314 + +0.2
288,400 - Synpcc7942_0291 0.40 -2.8
288,437 - Synpcc7942_0291 0.57 +1.1
288,447 - Synpcc7942_0291 0.62 -4.4
288,482 - Synpcc7942_0291 0.78 -0.0
288,513 - -0.0
288,513 - -0.4
288,532 - -1.2
288,532 - +0.9
288,532 - -1.4
288,536 + -0.3

Or see this region's nucleotide sequence