Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0187 and Synpcc7942_0188 are separated by 220 nucleotides Synpcc7942_0188 and guaA are separated by 112 nucleotides
Synpcc7942_0187: Synpcc7942_0187 - hypothetical protein, at 184,418 to 185,461
_0187
Synpcc7942_0188: Synpcc7942_0188 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 185,682 to 187,418
_0188
Synpcc7942_0189: guaA - bifunctional GMP synthase/glutamine amidotransferase protein, at 187,531 to 189,258
guaA
Position (kb) 185
186
187
188 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 184.873 kb on + strand, within Synpcc7942_0187 at 184.905 kb on - strand, within Synpcc7942_0187 at 184.944 kb on + strand, within Synpcc7942_0187 at 185.076 kb on - strand, within Synpcc7942_0187 at 185.078 kb on + strand, within Synpcc7942_0187 at 185.275 kb on - strand, within Synpcc7942_0187 at 185.283 kb on - strand, within Synpcc7942_0187 at 185.379 kb on + strand at 185.428 kb on - strand at 185.453 kb on + strand at 185.472 kb on + strand at 185.480 kb on - strand at 185.516 kb on - strand at 185.541 kb on - strand at 185.567 kb on - strand at 185.567 kb on - strand at 185.572 kb on + strand at 185.588 kb on + strand at 185.588 kb on + strand at 185.601 kb on - strand at 185.645 kb on + strand at 185.645 kb on + strand at 185.653 kb on - strand at 185.671 kb on - strand at 185.747 kb on - strand at 185.779 kb on + strand at 185.779 kb on - strand at 185.787 kb on - strand at 185.790 kb on + strand at 185.792 kb on - strand at 185.792 kb on - strand at 185.797 kb on - strand at 185.798 kb on - strand at 185.798 kb on - strand at 185.826 kb on + strand at 185.859 kb on - strand, within Synpcc7942_0188 at 185.865 kb on + strand, within Synpcc7942_0188 at 185.920 kb on + strand, within Synpcc7942_0188 at 185.923 kb on + strand, within Synpcc7942_0188 at 185.938 kb on - strand, within Synpcc7942_0188 at 185.967 kb on + strand, within Synpcc7942_0188 at 185.967 kb on + strand, within Synpcc7942_0188 at 185.975 kb on - strand, within Synpcc7942_0188 at 185.975 kb on - strand, within Synpcc7942_0188 at 185.975 kb on - strand, within Synpcc7942_0188 at 185.975 kb on - strand, within Synpcc7942_0188 at 185.990 kb on - strand, within Synpcc7942_0188 at 186.037 kb on - strand, within Synpcc7942_0188 at 186.045 kb on + strand, within Synpcc7942_0188 at 186.059 kb on + strand, within Synpcc7942_0188 at 186.059 kb on + strand, within Synpcc7942_0188 at 186.059 kb on + strand, within Synpcc7942_0188 at 186.067 kb on - strand, within Synpcc7942_0188 at 186.068 kb on - strand, within Synpcc7942_0188 at 186.074 kb on - strand, within Synpcc7942_0188 at 186.102 kb on + strand, within Synpcc7942_0188 at 186.152 kb on + strand, within Synpcc7942_0188 at 186.153 kb on + strand, within Synpcc7942_0188 at 186.161 kb on - strand, within Synpcc7942_0188 at 186.167 kb on - strand, within Synpcc7942_0188 at 186.172 kb on - strand, within Synpcc7942_0188 at 186.206 kb on + strand, within Synpcc7942_0188 at 186.218 kb on + strand, within Synpcc7942_0188 at 186.230 kb on + strand, within Synpcc7942_0188 at 186.236 kb on - strand, within Synpcc7942_0188 at 186.237 kb on + strand, within Synpcc7942_0188 at 186.250 kb on - strand, within Synpcc7942_0188 at 186.272 kb on + strand, within Synpcc7942_0188 at 186.272 kb on + strand, within Synpcc7942_0188 at 186.298 kb on - strand, within Synpcc7942_0188 at 186.313 kb on + strand, within Synpcc7942_0188 at 186.364 kb on + strand, within Synpcc7942_0188 at 186.371 kb on - strand, within Synpcc7942_0188 at 186.374 kb on + strand, within Synpcc7942_0188 at 186.382 kb on - strand, within Synpcc7942_0188 at 186.409 kb on + strand, within Synpcc7942_0188 at 186.417 kb on + strand, within Synpcc7942_0188 at 186.417 kb on + strand, within Synpcc7942_0188 at 186.425 kb on - strand, within Synpcc7942_0188 at 186.427 kb on + strand, within Synpcc7942_0188 at 186.427 kb on + strand, within Synpcc7942_0188 at 186.434 kb on + strand, within Synpcc7942_0188 at 186.435 kb on - strand, within Synpcc7942_0188 at 186.450 kb on + strand, within Synpcc7942_0188 at 186.450 kb on + strand, within Synpcc7942_0188 at 186.450 kb on + strand, within Synpcc7942_0188 at 186.495 kb on + strand, within Synpcc7942_0188 at 186.498 kb on + strand, within Synpcc7942_0188 at 186.503 kb on - strand, within Synpcc7942_0188 at 186.503 kb on - strand, within Synpcc7942_0188 at 186.516 kb on - strand, within Synpcc7942_0188 at 186.537 kb on - strand, within Synpcc7942_0188 at 186.540 kb on + strand, within Synpcc7942_0188 at 186.540 kb on + strand, within Synpcc7942_0188 at 186.540 kb on + strand, within Synpcc7942_0188 at 186.540 kb on + strand, within Synpcc7942_0188 at 186.548 kb on - strand, within Synpcc7942_0188 at 186.567 kb on + strand, within Synpcc7942_0188 at 186.567 kb on + strand, within Synpcc7942_0188 at 186.567 kb on + strand, within Synpcc7942_0188 at 186.567 kb on + strand, within Synpcc7942_0188 at 186.606 kb on + strand at 186.624 kb on - strand, within Synpcc7942_0188 at 186.636 kb on + strand, within Synpcc7942_0188 at 186.649 kb on - strand, within Synpcc7942_0188 at 186.679 kb on + strand, within Synpcc7942_0188 at 186.717 kb on - strand, within Synpcc7942_0188 at 186.750 kb on + strand, within Synpcc7942_0188 at 186.766 kb on + strand, within Synpcc7942_0188 at 186.788 kb on - strand, within Synpcc7942_0188 at 186.808 kb on + strand, within Synpcc7942_0188 at 186.808 kb on + strand, within Synpcc7942_0188 at 186.808 kb on + strand, within Synpcc7942_0188 at 186.808 kb on + strand, within Synpcc7942_0188 at 186.808 kb on + strand, within Synpcc7942_0188 at 186.808 kb on + strand, within Synpcc7942_0188 at 186.808 kb on + strand, within Synpcc7942_0188 at 186.816 kb on - strand, within Synpcc7942_0188 at 186.816 kb on - strand, within Synpcc7942_0188 at 186.816 kb on - strand, within Synpcc7942_0188 at 186.816 kb on - strand, within Synpcc7942_0188 at 186.816 kb on - strand, within Synpcc7942_0188 at 186.817 kb on + strand, within Synpcc7942_0188 at 186.827 kb on - strand, within Synpcc7942_0188 at 186.899 kb on + strand, within Synpcc7942_0188 at 186.907 kb on - strand, within Synpcc7942_0188 at 186.907 kb on - strand, within Synpcc7942_0188 at 186.911 kb on + strand, within Synpcc7942_0188 at 186.918 kb on + strand, within Synpcc7942_0188 at 186.952 kb on + strand, within Synpcc7942_0188 at 186.978 kb on + strand, within Synpcc7942_0188 at 186.996 kb on - strand, within Synpcc7942_0188 at 187.033 kb on + strand, within Synpcc7942_0188 at 187.033 kb on + strand, within Synpcc7942_0188 at 187.034 kb on - strand, within Synpcc7942_0188 at 187.034 kb on - strand, within Synpcc7942_0188 at 187.034 kb on - strand, within Synpcc7942_0188 at 187.034 kb on - strand, within Synpcc7942_0188 at 187.034 kb on - strand, within Synpcc7942_0188 at 187.041 kb on - strand, within Synpcc7942_0188 at 187.055 kb on + strand, within Synpcc7942_0188 at 187.067 kb on + strand, within Synpcc7942_0188 at 187.067 kb on + strand, within Synpcc7942_0188 at 187.067 kb on + strand, within Synpcc7942_0188 at 187.075 kb on - strand, within Synpcc7942_0188 at 187.077 kb on - strand, within Synpcc7942_0188 at 187.084 kb on + strand, within Synpcc7942_0188 at 187.104 kb on - strand, within Synpcc7942_0188 at 187.136 kb on + strand, within Synpcc7942_0188 at 187.143 kb on - strand, within Synpcc7942_0188 at 187.162 kb on - strand, within Synpcc7942_0188 at 187.205 kb on - strand, within Synpcc7942_0188 at 187.207 kb on - strand, within Synpcc7942_0188 at 187.232 kb on - strand, within Synpcc7942_0188 at 187.235 kb on + strand, within Synpcc7942_0188 at 187.256 kb on - strand at 187.275 kb on - strand at 187.299 kb on - strand at 187.319 kb on + strand at 187.319 kb on + strand at 187.335 kb on + strand at 187.335 kb on + strand at 187.341 kb on + strand at 187.343 kb on - strand at 187.343 kb on - strand at 187.346 kb on + strand at 187.346 kb on + strand at 187.346 kb on + strand at 187.346 kb on + strand at 187.346 kb on + strand at 187.351 kb on + strand at 187.354 kb on - strand at 187.354 kb on - strand at 187.359 kb on + strand at 187.367 kb on - strand at 187.398 kb on + strand at 187.404 kb on + strand at 187.426 kb on - strand at 187.455 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.489 kb on + strand at 187.490 kb on + strand at 187.496 kb on - strand at 187.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 184,873 + Synpcc7942_0187 0.44 +1.0 184,905 - Synpcc7942_0187 0.47 +1.0 184,944 + Synpcc7942_0187 0.50 +1.0 185,076 - Synpcc7942_0187 0.63 +1.0 185,078 + Synpcc7942_0187 0.63 +1.0 185,275 - Synpcc7942_0187 0.82 +1.0 185,283 - Synpcc7942_0187 0.83 +1.0 185,379 + +1.0 185,428 - -0.6 185,453 + -0.0 185,472 + -1.7 185,480 - +1.0 185,516 - -0.0 185,541 - -0.9 185,567 - +1.5 185,567 - -0.9 185,572 + +1.7 185,588 + -2.6 185,588 + -0.0 185,601 - -0.2 185,645 + -2.1 185,645 + -0.0 185,653 - +1.3 185,671 - -1.0 185,747 - -2.6 185,779 + -1.0 185,779 - +0.7 185,787 - +2.1 185,790 + +0.4 185,792 - -0.6 185,792 - +0.7 185,797 - -3.2 185,798 - -0.8 185,798 - -1.6 185,826 + -0.6 185,859 - Synpcc7942_0188 0.10 +0.4 185,865 + Synpcc7942_0188 0.11 -1.9 185,920 + Synpcc7942_0188 0.14 -1.2 185,923 + Synpcc7942_0188 0.14 +1.3 185,938 - Synpcc7942_0188 0.15 +2.0 185,967 + Synpcc7942_0188 0.16 -1.9 185,967 + Synpcc7942_0188 0.16 +0.0 185,975 - Synpcc7942_0188 0.17 +2.5 185,975 - Synpcc7942_0188 0.17 -1.0 185,975 - Synpcc7942_0188 0.17 -0.8 185,975 - Synpcc7942_0188 0.17 -1.2 185,990 - Synpcc7942_0188 0.18 -0.7 186,037 - Synpcc7942_0188 0.20 -2.7 186,045 + Synpcc7942_0188 0.21 -0.4 186,059 + Synpcc7942_0188 0.22 -2.7 186,059 + Synpcc7942_0188 0.22 +0.4 186,059 + Synpcc7942_0188 0.22 +0.6 186,067 - Synpcc7942_0188 0.22 -4.1 186,068 - Synpcc7942_0188 0.22 +1.0 186,074 - Synpcc7942_0188 0.23 -1.4 186,102 + Synpcc7942_0188 0.24 +1.3 186,152 + Synpcc7942_0188 0.27 -1.0 186,153 + Synpcc7942_0188 0.27 -2.4 186,161 - Synpcc7942_0188 0.28 -0.7 186,167 - Synpcc7942_0188 0.28 -1.3 186,172 - Synpcc7942_0188 0.28 -4.2 186,206 + Synpcc7942_0188 0.30 -0.4 186,218 + Synpcc7942_0188 0.31 +1.0 186,230 + Synpcc7942_0188 0.32 -2.1 186,236 - Synpcc7942_0188 0.32 +1.0 186,237 + Synpcc7942_0188 0.32 -1.8 186,250 - Synpcc7942_0188 0.33 +0.2 186,272 + Synpcc7942_0188 0.34 -0.5 186,272 + Synpcc7942_0188 0.34 -2.0 186,298 - Synpcc7942_0188 0.35 +0.1 186,313 + Synpcc7942_0188 0.36 +1.4 186,364 + Synpcc7942_0188 0.39 -0.5 186,371 - Synpcc7942_0188 0.40 -1.2 186,374 + Synpcc7942_0188 0.40 -0.4 186,382 - Synpcc7942_0188 0.40 -1.2 186,409 + Synpcc7942_0188 0.42 -1.0 186,417 + Synpcc7942_0188 0.42 +2.4 186,417 + Synpcc7942_0188 0.42 +0.4 186,425 - Synpcc7942_0188 0.43 -0.7 186,427 + Synpcc7942_0188 0.43 +0.5 186,427 + Synpcc7942_0188 0.43 -1.0 186,434 + Synpcc7942_0188 0.43 +3.8 186,435 - Synpcc7942_0188 0.43 +2.0 186,450 + Synpcc7942_0188 0.44 -0.8 186,450 + Synpcc7942_0188 0.44 -0.7 186,450 + Synpcc7942_0188 0.44 -2.0 186,495 + Synpcc7942_0188 0.47 -1.2 186,498 + Synpcc7942_0188 0.47 +3.0 186,503 - Synpcc7942_0188 0.47 -1.5 186,503 - Synpcc7942_0188 0.47 +0.6 186,516 - Synpcc7942_0188 0.48 -0.7 186,537 - Synpcc7942_0188 0.49 -3.1 186,540 + Synpcc7942_0188 0.49 +0.4 186,540 + Synpcc7942_0188 0.49 +2.4 186,540 + Synpcc7942_0188 0.49 +1.0 186,540 + Synpcc7942_0188 0.49 -0.1 186,548 - Synpcc7942_0188 0.50 +1.0 186,567 + Synpcc7942_0188 0.51 -1.4 186,567 + Synpcc7942_0188 0.51 +1.0 186,567 + Synpcc7942_0188 0.51 -0.5 186,567 + Synpcc7942_0188 0.51 -3.2 186,606 + -1.0 186,624 - Synpcc7942_0188 0.54 -1.5 186,636 + Synpcc7942_0188 0.55 -1.9 186,649 - Synpcc7942_0188 0.56 -0.8 186,679 + Synpcc7942_0188 0.57 -1.4 186,717 - Synpcc7942_0188 0.60 +1.3 186,750 + Synpcc7942_0188 0.61 +2.4 186,766 + Synpcc7942_0188 0.62 +1.0 186,788 - Synpcc7942_0188 0.64 -0.8 186,808 + Synpcc7942_0188 0.65 -0.9 186,808 + Synpcc7942_0188 0.65 -1.3 186,808 + Synpcc7942_0188 0.65 -1.3 186,808 + Synpcc7942_0188 0.65 -0.8 186,808 + Synpcc7942_0188 0.65 +2.3 186,808 + Synpcc7942_0188 0.65 -1.9 186,808 + Synpcc7942_0188 0.65 +1.0 186,816 - Synpcc7942_0188 0.65 -2.0 186,816 - Synpcc7942_0188 0.65 -3.6 186,816 - Synpcc7942_0188 0.65 -1.2 186,816 - Synpcc7942_0188 0.65 -1.9 186,816 - Synpcc7942_0188 0.65 -0.0 186,817 + Synpcc7942_0188 0.65 -1.7 186,827 - Synpcc7942_0188 0.66 -0.8 186,899 + Synpcc7942_0188 0.70 -3.0 186,907 - Synpcc7942_0188 0.71 -0.3 186,907 - Synpcc7942_0188 0.71 -3.3 186,911 + Synpcc7942_0188 0.71 -4.2 186,918 + Synpcc7942_0188 0.71 -1.6 186,952 + Synpcc7942_0188 0.73 -0.2 186,978 + Synpcc7942_0188 0.75 -2.5 186,996 - Synpcc7942_0188 0.76 -0.2 187,033 + Synpcc7942_0188 0.78 -1.0 187,033 + Synpcc7942_0188 0.78 +0.4 187,034 - Synpcc7942_0188 0.78 -1.0 187,034 - Synpcc7942_0188 0.78 -1.0 187,034 - Synpcc7942_0188 0.78 -0.6 187,034 - Synpcc7942_0188 0.78 +2.5 187,034 - Synpcc7942_0188 0.78 -1.0 187,041 - Synpcc7942_0188 0.78 -2.0 187,055 + Synpcc7942_0188 0.79 +0.4 187,067 + Synpcc7942_0188 0.80 -0.5 187,067 + Synpcc7942_0188 0.80 +0.5 187,067 + Synpcc7942_0188 0.80 -3.0 187,075 - Synpcc7942_0188 0.80 +0.4 187,077 - Synpcc7942_0188 0.80 -3.0 187,084 + Synpcc7942_0188 0.81 -1.2 187,104 - Synpcc7942_0188 0.82 +0.1 187,136 + Synpcc7942_0188 0.84 +0.1 187,143 - Synpcc7942_0188 0.84 -0.0 187,162 - Synpcc7942_0188 0.85 -1.0 187,205 - Synpcc7942_0188 0.88 -1.5 187,207 - Synpcc7942_0188 0.88 +0.1 187,232 - Synpcc7942_0188 0.89 +2.5 187,235 + Synpcc7942_0188 0.89 +1.8 187,256 - +0.6 187,275 - -0.8 187,299 - -1.4 187,319 + +0.1 187,319 + +0.7 187,335 + -0.9 187,335 + +1.0 187,341 + -3.5 187,343 - -1.3 187,343 - +1.0 187,346 + -2.7 187,346 + -1.0 187,346 + +1.5 187,346 + +1.0 187,346 + -0.0 187,351 + -0.4 187,354 - -1.0 187,354 - +1.5 187,359 + +1.2 187,367 - -0.0 187,398 + +2.0 187,404 + -2.1 187,426 - -1.4 187,455 + +1.0 187,479 + -1.2 187,479 + -0.8 187,479 + -2.8 187,479 + -0.6 187,479 + -1.1 187,479 + +2.2 187,479 + -0.1 187,479 + -0.8 187,479 + +1.6 187,479 + -0.0 187,479 + -0.7 187,479 + +2.5 187,479 + +0.8 187,479 + +1.0 187,479 + -2.1 187,479 + -3.7 187,479 + +0.3 187,479 + +1.5 187,479 + +1.0 187,479 + -1.5 187,479 + -0.1 187,487 - +2.3 187,487 - +1.0 187,487 - -1.4 187,487 - -3.0 187,487 - +0.1 187,487 - -0.7 187,487 - +2.3 187,487 - -0.6 187,487 - -0.0 187,487 - -1.0 187,487 - -1.3 187,487 - -0.3 187,487 - +5.4 187,487 - +3.5 187,487 - +2.5 187,487 - +1.0 187,487 - +0.6 187,487 - +1.0 187,487 - -1.0 187,487 - -3.5 187,487 - +0.0 187,487 - -2.7 187,487 - -0.3 187,487 - +1.0 187,487 - -1.1 187,487 - -0.0 187,487 - +1.0 187,487 - +2.4 187,489 + +1.0 187,490 + -2.4 187,496 - -0.8 187,522 - +0.1
Or see this region's nucleotide sequence