Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ggt and Synpcc7942_0186 are separated by 13 nucleotides Synpcc7942_0186 and Synpcc7942_0187 are separated by 6 nucleotides
Synpcc7942_0185: ggt - gamma-glutamyltransferase. Threonine peptidase. MEROPS family T03, at 182,620 to 184,146
ggt
Synpcc7942_0186: Synpcc7942_0186 - possible DNA polymerase, at 184,160 to 184,411
_0186
Synpcc7942_0187: Synpcc7942_0187 - hypothetical protein, at 184,418 to 185,461
_0187
Position (kb) 184
185 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 183.176 kb on - strand, within ggt at 183.212 kb on - strand, within ggt at 183.212 kb on - strand, within ggt at 183.212 kb on - strand, within ggt at 183.212 kb on - strand, within ggt at 183.219 kb on - strand, within ggt at 183.322 kb on + strand, within ggt at 183.369 kb on + strand, within ggt at 183.369 kb on + strand, within ggt at 183.380 kb on - strand, within ggt at 183.394 kb on + strand, within ggt at 183.420 kb on + strand, within ggt at 183.437 kb on + strand, within ggt at 183.439 kb on + strand, within ggt at 183.440 kb on - strand, within ggt at 183.445 kb on - strand, within ggt at 183.445 kb on - strand, within ggt at 183.458 kb on + strand, within ggt at 183.466 kb on - strand, within ggt at 183.471 kb on - strand, within ggt at 183.480 kb on + strand, within ggt at 183.488 kb on - strand, within ggt at 183.488 kb on - strand, within ggt at 183.517 kb on + strand, within ggt at 183.533 kb on - strand, within ggt at 183.552 kb on - strand, within ggt at 183.592 kb on + strand, within ggt at 183.605 kb on - strand, within ggt at 183.607 kb on + strand, within ggt at 183.612 kb on + strand, within ggt at 183.612 kb on + strand, within ggt at 183.625 kb on - strand at 183.646 kb on + strand, within ggt at 183.649 kb on - strand, within ggt at 183.655 kb on + strand, within ggt at 183.659 kb on - strand, within ggt at 183.672 kb on - strand, within ggt at 183.693 kb on + strand, within ggt at 183.703 kb on + strand, within ggt at 183.703 kb on + strand, within ggt at 183.703 kb on + strand, within ggt at 183.711 kb on - strand, within ggt at 183.728 kb on - strand, within ggt at 183.781 kb on - strand, within ggt at 183.791 kb on + strand, within ggt at 183.801 kb on + strand, within ggt at 183.868 kb on + strand, within ggt at 183.872 kb on + strand, within ggt at 183.879 kb on - strand, within ggt at 183.898 kb on + strand, within ggt at 183.905 kb on + strand, within ggt at 183.905 kb on + strand, within ggt at 183.953 kb on + strand, within ggt at 183.966 kb on - strand, within ggt at 183.966 kb on - strand, within ggt at 183.966 kb on - strand, within ggt at 183.970 kb on + strand, within ggt at 183.976 kb on + strand, within ggt at 183.976 kb on + strand, within ggt at 183.976 kb on + strand, within ggt at 183.984 kb on - strand, within ggt at 183.984 kb on - strand, within ggt at 183.993 kb on + strand, within ggt at 184.001 kb on - strand at 184.006 kb on + strand at 184.006 kb on + strand at 184.014 kb on - strand at 184.029 kb on + strand at 184.029 kb on + strand at 184.029 kb on + strand at 184.029 kb on + strand at 184.029 kb on + strand at 184.029 kb on + strand at 184.029 kb on + strand at 184.029 kb on + strand at 184.037 kb on - strand at 184.039 kb on + strand at 184.039 kb on + strand at 184.045 kb on + strand at 184.070 kb on + strand at 184.103 kb on - strand at 184.127 kb on + strand at 184.129 kb on + strand at 184.152 kb on - strand at 184.159 kb on - strand at 184.170 kb on + strand at 184.170 kb on - strand at 184.173 kb on - strand at 184.177 kb on + strand at 184.178 kb on - strand at 184.183 kb on - strand at 184.220 kb on - strand, within Synpcc7942_0186 at 184.292 kb on + strand, within Synpcc7942_0186 at 184.329 kb on + strand, within Synpcc7942_0186 at 184.342 kb on - strand, within Synpcc7942_0186 at 184.343 kb on + strand, within Synpcc7942_0186 at 184.343 kb on + strand at 184.343 kb on + strand, within Synpcc7942_0186 at 184.343 kb on + strand, within Synpcc7942_0186 at 184.343 kb on + strand, within Synpcc7942_0186 at 184.343 kb on + strand, within Synpcc7942_0186 at 184.351 kb on + strand, within Synpcc7942_0186 at 184.351 kb on - strand, within Synpcc7942_0186 at 184.351 kb on - strand, within Synpcc7942_0186 at 184.351 kb on - strand, within Synpcc7942_0186 at 184.351 kb on - strand, within Synpcc7942_0186 at 184.351 kb on - strand, within Synpcc7942_0186 at 184.351 kb on - strand at 184.351 kb on - strand, within Synpcc7942_0186 at 184.377 kb on + strand, within Synpcc7942_0186 at 184.386 kb on + strand at 184.387 kb on + strand at 184.395 kb on - strand at 184.395 kb on - strand at 184.421 kb on + strand at 184.423 kb on - strand at 184.455 kb on - strand at 184.467 kb on - strand at 184.493 kb on + strand at 184.527 kb on + strand, within Synpcc7942_0187 at 184.873 kb on + strand, within Synpcc7942_0187 at 184.905 kb on - strand, within Synpcc7942_0187 at 184.944 kb on + strand, within Synpcc7942_0187 at 185.076 kb on - strand, within Synpcc7942_0187 at 185.078 kb on + strand, within Synpcc7942_0187 at 185.275 kb on - strand, within Synpcc7942_0187 at 185.283 kb on - strand, within Synpcc7942_0187 at 185.379 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 183,176 - ggt Synpcc7942_0185 0.36 -1.3 183,212 - ggt Synpcc7942_0185 0.39 -2.8 183,212 - ggt Synpcc7942_0185 0.39 -2.1 183,212 - ggt Synpcc7942_0185 0.39 +2.0 183,212 - ggt Synpcc7942_0185 0.39 -0.8 183,219 - ggt Synpcc7942_0185 0.39 -1.3 183,322 + ggt Synpcc7942_0185 0.46 -1.3 183,369 + ggt Synpcc7942_0185 0.49 -0.4 183,369 + ggt Synpcc7942_0185 0.49 -0.3 183,380 - ggt Synpcc7942_0185 0.50 -2.4 183,394 + ggt Synpcc7942_0185 0.51 -1.8 183,420 + ggt Synpcc7942_0185 0.52 -0.2 183,437 + ggt Synpcc7942_0185 0.54 +0.6 183,439 + ggt Synpcc7942_0185 0.54 -1.1 183,440 - ggt Synpcc7942_0185 0.54 +0.7 183,445 - ggt Synpcc7942_0185 0.54 -0.9 183,445 - ggt Synpcc7942_0185 0.54 -1.6 183,458 + ggt Synpcc7942_0185 0.55 -0.5 183,466 - ggt Synpcc7942_0185 0.55 -2.8 183,471 - ggt Synpcc7942_0185 0.56 -1.3 183,480 + ggt Synpcc7942_0185 0.56 -0.4 183,488 - ggt Synpcc7942_0185 0.57 +1.5 183,488 - ggt Synpcc7942_0185 0.57 +0.6 183,517 + ggt Synpcc7942_0185 0.59 +0.3 183,533 - ggt Synpcc7942_0185 0.60 -3.9 183,552 - ggt Synpcc7942_0185 0.61 -1.0 183,592 + ggt Synpcc7942_0185 0.64 -1.5 183,605 - ggt Synpcc7942_0185 0.65 +0.4 183,607 + ggt Synpcc7942_0185 0.65 +1.5 183,612 + ggt Synpcc7942_0185 0.65 -2.9 183,612 + ggt Synpcc7942_0185 0.65 -1.2 183,625 - -2.5 183,646 + ggt Synpcc7942_0185 0.67 -0.9 183,649 - ggt Synpcc7942_0185 0.67 -1.0 183,655 + ggt Synpcc7942_0185 0.68 -0.1 183,659 - ggt Synpcc7942_0185 0.68 -1.3 183,672 - ggt Synpcc7942_0185 0.69 -1.9 183,693 + ggt Synpcc7942_0185 0.70 +1.1 183,703 + ggt Synpcc7942_0185 0.71 -0.9 183,703 + ggt Synpcc7942_0185 0.71 +1.7 183,703 + ggt Synpcc7942_0185 0.71 -0.0 183,711 - ggt Synpcc7942_0185 0.71 +0.2 183,728 - ggt Synpcc7942_0185 0.73 -2.0 183,781 - ggt Synpcc7942_0185 0.76 -1.1 183,791 + ggt Synpcc7942_0185 0.77 -2.1 183,801 + ggt Synpcc7942_0185 0.77 -0.7 183,868 + ggt Synpcc7942_0185 0.82 +0.7 183,872 + ggt Synpcc7942_0185 0.82 -1.4 183,879 - ggt Synpcc7942_0185 0.82 +2.8 183,898 + ggt Synpcc7942_0185 0.84 -2.3 183,905 + ggt Synpcc7942_0185 0.84 -1.2 183,905 + ggt Synpcc7942_0185 0.84 +1.0 183,953 + ggt Synpcc7942_0185 0.87 +1.0 183,966 - ggt Synpcc7942_0185 0.88 +1.0 183,966 - ggt Synpcc7942_0185 0.88 -1.0 183,966 - ggt Synpcc7942_0185 0.88 -3.1 183,970 + ggt Synpcc7942_0185 0.88 -1.7 183,976 + ggt Synpcc7942_0185 0.89 -3.7 183,976 + ggt Synpcc7942_0185 0.89 +0.7 183,976 + ggt Synpcc7942_0185 0.89 -0.6 183,984 - ggt Synpcc7942_0185 0.89 -2.4 183,984 - ggt Synpcc7942_0185 0.89 -1.1 183,993 + ggt Synpcc7942_0185 0.90 -1.6 184,001 - -0.9 184,006 + -0.4 184,006 + -0.5 184,014 - -0.3 184,029 + -0.9 184,029 + +3.3 184,029 + +0.2 184,029 + -1.4 184,029 + -1.2 184,029 + -1.0 184,029 + -1.6 184,029 + -0.6 184,037 - -2.0 184,039 + -1.7 184,039 + -0.7 184,045 + -0.9 184,070 + +2.0 184,103 - -0.5 184,127 + -0.0 184,129 + +1.6 184,152 - +2.5 184,159 - +3.0 184,170 + -0.5 184,170 - +0.4 184,173 - -1.8 184,177 + -0.0 184,178 - -0.5 184,183 - -0.0 184,220 - Synpcc7942_0186 0.24 -2.1 184,292 + Synpcc7942_0186 0.52 -1.7 184,329 + Synpcc7942_0186 0.67 -1.0 184,342 - Synpcc7942_0186 0.72 -1.3 184,343 + Synpcc7942_0186 0.73 -3.6 184,343 + -0.3 184,343 + Synpcc7942_0186 0.73 -0.6 184,343 + Synpcc7942_0186 0.73 -2.0 184,343 + Synpcc7942_0186 0.73 -0.7 184,343 + Synpcc7942_0186 0.73 -2.9 184,351 + Synpcc7942_0186 0.76 -1.0 184,351 - Synpcc7942_0186 0.76 +1.0 184,351 - Synpcc7942_0186 0.76 +0.2 184,351 - Synpcc7942_0186 0.76 -1.1 184,351 - Synpcc7942_0186 0.76 -0.8 184,351 - Synpcc7942_0186 0.76 -1.3 184,351 - -0.5 184,351 - Synpcc7942_0186 0.76 +1.0 184,377 + Synpcc7942_0186 0.86 -1.9 184,386 + -3.0 184,387 + -2.2 184,395 - +1.5 184,395 - +0.4 184,421 + -0.0 184,423 - +1.7 184,455 - +2.0 184,467 - +0.6 184,493 + -1.6 184,527 + Synpcc7942_0187 0.10 -0.4 184,873 + Synpcc7942_0187 0.44 +1.0 184,905 - Synpcc7942_0187 0.47 +1.0 184,944 + Synpcc7942_0187 0.50 +1.0 185,076 - Synpcc7942_0187 0.63 +1.0 185,078 + Synpcc7942_0187 0.63 +1.0 185,275 - Synpcc7942_0187 0.82 +1.0 185,283 - Synpcc7942_0187 0.83 +1.0 185,379 + +1.0
Or see this region's nucleotide sequence