Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0149

Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0148 and Synpcc7942_0149 overlap by 4 nucleotidesSynpcc7942_0149 and Synpcc7942_0150 are separated by 7 nucleotides Synpcc7942_0148: Synpcc7942_0148 - hypothetical protein, at 148,646 to 150,190 _0148 Synpcc7942_0149: Synpcc7942_0149 - methylated-DNA--protein-cysteine methyltransferase, at 150,187 to 150,744 _0149 Synpcc7942_0150: Synpcc7942_0150 - Dolichyl-phosphate beta-D-mannosyltransferase, at 150,752 to 151,918 _0150 Position (kb) 150 151Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 149.657 kb on - strand, within Synpcc7942_0148at 149.718 kb on + strand, within Synpcc7942_0148at 150.185 kb on - strandat 150.191 kb on - strandat 150.214 kb on + strandat 150.224 kb on - strandat 150.241 kb on + strandat 150.258 kb on - strand, within Synpcc7942_0149at 150.265 kb on + strand, within Synpcc7942_0149at 150.275 kb on - strand, within Synpcc7942_0149at 150.330 kb on + strand, within Synpcc7942_0149at 150.338 kb on - strand, within Synpcc7942_0149at 150.341 kb on + strand, within Synpcc7942_0149at 150.341 kb on + strand, within Synpcc7942_0149at 150.341 kb on + strand, within Synpcc7942_0149at 150.341 kb on + strand, within Synpcc7942_0149at 150.341 kb on + strand, within Synpcc7942_0149at 150.341 kb on + strand, within Synpcc7942_0149at 150.349 kb on - strand, within Synpcc7942_0149at 150.349 kb on - strand, within Synpcc7942_0149at 150.349 kb on - strand, within Synpcc7942_0149at 150.349 kb on - strand, within Synpcc7942_0149at 150.349 kb on - strand, within Synpcc7942_0149at 150.349 kb on - strand, within Synpcc7942_0149at 150.349 kb on - strand, within Synpcc7942_0149at 150.349 kb on - strand, within Synpcc7942_0149at 150.349 kb on - strand, within Synpcc7942_0149at 150.349 kb on - strand, within Synpcc7942_0149at 150.349 kb on - strand, within Synpcc7942_0149at 150.365 kb on + strand, within Synpcc7942_0149at 150.378 kb on - strand, within Synpcc7942_0149at 150.378 kb on - strand, within Synpcc7942_0149at 150.392 kb on + strand, within Synpcc7942_0149at 150.435 kb on + strand, within Synpcc7942_0149at 150.440 kb on + strand, within Synpcc7942_0149at 150.464 kb on - strand, within Synpcc7942_0149at 150.465 kb on + strand, within Synpcc7942_0149at 150.487 kb on + strand, within Synpcc7942_0149at 150.649 kb on + strand, within Synpcc7942_0149at 150.664 kb on - strand, within Synpcc7942_0149at 150.671 kb on - strand, within Synpcc7942_0149at 150.679 kb on - strand, within Synpcc7942_0149at 150.699 kb on + strandat 150.748 kb on + strandat 150.796 kb on - strandat 150.951 kb on + strand, within Synpcc7942_0150at 151.019 kb on - strand, within Synpcc7942_0150at 151.039 kb on + strand, within Synpcc7942_0150at 151.045 kb on - strand, within Synpcc7942_0150at 151.079 kb on + strand, within Synpcc7942_0150at 151.135 kb on + strand, within Synpcc7942_0150at 151.165 kb on + strand, within Synpcc7942_0150at 151.167 kb on + strand, within Synpcc7942_0150at 151.167 kb on + strand, within Synpcc7942_0150at 151.167 kb on + strand, within Synpcc7942_0150at 151.175 kb on - strand, within Synpcc7942_0150at 151.183 kb on - strand, within Synpcc7942_0150at 151.185 kb on - strand, within Synpcc7942_0150at 151.185 kb on - strand, within Synpcc7942_0150at 151.185 kb on - strand, within Synpcc7942_0150at 151.219 kb on + strand, within Synpcc7942_0150at 151.273 kb on + strand, within Synpcc7942_0150at 151.287 kb on + strand, within Synpcc7942_0150at 151.323 kb on - strand, within Synpcc7942_0150at 151.351 kb on + strand, within Synpcc7942_0150at 151.351 kb on + strand, within Synpcc7942_0150at 151.359 kb on - strand, within Synpcc7942_0150at 151.359 kb on - strand, within Synpcc7942_0150at 151.372 kb on - strand, within Synpcc7942_0150at 151.373 kb on - strand, within Synpcc7942_0150at 151.374 kb on + strand, within Synpcc7942_0150at 151.393 kb on - strand, within Synpcc7942_0150at 151.420 kb on + strand, within Synpcc7942_0150at 151.420 kb on + strand, within Synpcc7942_0150at 151.428 kb on - strand, within Synpcc7942_0150at 151.428 kb on - strand, within Synpcc7942_0150at 151.507 kb on - strand, within Synpcc7942_0150at 151.524 kb on + strand, within Synpcc7942_0150at 151.556 kb on + strand, within Synpcc7942_0150at 151.616 kb on + strand, within Synpcc7942_0150at 151.616 kb on + strand, within Synpcc7942_0150at 151.624 kb on - strand, within Synpcc7942_0150at 151.676 kb on - strand, within Synpcc7942_0150at 151.683 kb on - strand, within Synpcc7942_0150at 151.701 kb on + strand, within Synpcc7942_0150at 151.703 kb on - strand, within Synpcc7942_0150at 151.709 kb on - strand, within Synpcc7942_0150at 151.721 kb on + strand, within Synpcc7942_0150at 151.724 kb on - strand, within Synpcc7942_0150at 151.729 kb on - strand, within Synpcc7942_0150

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1
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149,657 - Synpcc7942_0148 0.65 +0.9
149,718 + Synpcc7942_0148 0.69 -3.5
150,185 - +2.7
150,191 - -0.3
150,214 + -2.8
150,224 - -1.4
150,241 + +0.3
150,258 - Synpcc7942_0149 0.13 +0.8
150,265 + Synpcc7942_0149 0.14 -1.0
150,275 - Synpcc7942_0149 0.16 +1.1
150,330 + Synpcc7942_0149 0.26 -1.0
150,338 - Synpcc7942_0149 0.27 -1.5
150,341 + Synpcc7942_0149 0.28 -0.3
150,341 + Synpcc7942_0149 0.28 -0.3
150,341 + Synpcc7942_0149 0.28 -1.4
150,341 + Synpcc7942_0149 0.28 -1.8
150,341 + Synpcc7942_0149 0.28 +1.3
150,341 + Synpcc7942_0149 0.28 -0.1
150,349 - Synpcc7942_0149 0.29 -1.4
150,349 - Synpcc7942_0149 0.29 -0.8
150,349 - Synpcc7942_0149 0.29 +1.3
150,349 - Synpcc7942_0149 0.29 +0.9
150,349 - Synpcc7942_0149 0.29 -0.1
150,349 - Synpcc7942_0149 0.29 -3.5
150,349 - Synpcc7942_0149 0.29 -0.1
150,349 - Synpcc7942_0149 0.29 -0.2
150,349 - Synpcc7942_0149 0.29 -2.8
150,349 - Synpcc7942_0149 0.29 -0.8
150,349 - Synpcc7942_0149 0.29 -1.3
150,365 + Synpcc7942_0149 0.32 -2.3
150,378 - Synpcc7942_0149 0.34 -1.2
150,378 - Synpcc7942_0149 0.34 -2.0
150,392 + Synpcc7942_0149 0.37 -0.9
150,435 + Synpcc7942_0149 0.44 +2.5
150,440 + Synpcc7942_0149 0.45 -2.5
150,464 - Synpcc7942_0149 0.50 -1.1
150,465 + Synpcc7942_0149 0.50 +1.1
150,487 + Synpcc7942_0149 0.54 -1.7
150,649 + Synpcc7942_0149 0.83 -1.7
150,664 - Synpcc7942_0149 0.85 -1.2
150,671 - Synpcc7942_0149 0.87 -1.1
150,679 - Synpcc7942_0149 0.88 -2.3
150,699 + -1.7
150,748 + -2.1
150,796 - +0.9
150,951 + Synpcc7942_0150 0.17 +0.9
151,019 - Synpcc7942_0150 0.23 +0.9
151,039 + Synpcc7942_0150 0.25 -1.7
151,045 - Synpcc7942_0150 0.25 +0.9
151,079 + Synpcc7942_0150 0.28 -0.1
151,135 + Synpcc7942_0150 0.33 -0.8
151,165 + Synpcc7942_0150 0.35 -1.1
151,167 + Synpcc7942_0150 0.36 -0.1
151,167 + Synpcc7942_0150 0.36 +0.9
151,167 + Synpcc7942_0150 0.36 +1.9
151,175 - Synpcc7942_0150 0.36 -0.7
151,183 - Synpcc7942_0150 0.37 +0.9
151,185 - Synpcc7942_0150 0.37 +2.5
151,185 - Synpcc7942_0150 0.37 +0.9
151,185 - Synpcc7942_0150 0.37 -1.1
151,219 + Synpcc7942_0150 0.40 +0.9
151,273 + Synpcc7942_0150 0.45 +0.9
151,287 + Synpcc7942_0150 0.46 -2.1
151,323 - Synpcc7942_0150 0.49 +0.9
151,351 + Synpcc7942_0150 0.51 -0.1
151,351 + Synpcc7942_0150 0.51 +0.9
151,359 - Synpcc7942_0150 0.52 +0.9
151,359 - Synpcc7942_0150 0.52 -0.1
151,372 - Synpcc7942_0150 0.53 +0.7
151,373 - Synpcc7942_0150 0.53 +0.9
151,374 + Synpcc7942_0150 0.53 +0.9
151,393 - Synpcc7942_0150 0.55 -0.1
151,420 + Synpcc7942_0150 0.57 -0.1
151,420 + Synpcc7942_0150 0.57 +0.9
151,428 - Synpcc7942_0150 0.58 +0.9
151,428 - Synpcc7942_0150 0.58 +0.9
151,507 - Synpcc7942_0150 0.65 -0.7
151,524 + Synpcc7942_0150 0.66 +0.9
151,556 + Synpcc7942_0150 0.69 -0.1
151,616 + Synpcc7942_0150 0.74 -3.1
151,616 + Synpcc7942_0150 0.74 -1.1
151,624 - Synpcc7942_0150 0.75 +0.9
151,676 - Synpcc7942_0150 0.79 +0.9
151,683 - Synpcc7942_0150 0.80 -0.1
151,701 + Synpcc7942_0150 0.81 -0.1
151,703 - Synpcc7942_0150 0.81 -0.7
151,709 - Synpcc7942_0150 0.82 +0.3
151,721 + Synpcc7942_0150 0.83 -0.7
151,724 - Synpcc7942_0150 0.83 +0.9
151,729 - Synpcc7942_0150 0.84 +0.9

Or see this region's nucleotide sequence