Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0129 and Synpcc7942_0130 overlap by 56 nucleotides Synpcc7942_0130 and Synpcc7942_0131 are separated by 260 nucleotides Synpcc7942_0131 and Synpcc7942_0132 are separated by 225 nucleotides
Synpcc7942_0129: Synpcc7942_0129 - Resolvase, RNase H-like fold, at 128,446 to 128,877
_0129
Synpcc7942_0130: Synpcc7942_0130 - hypothetical protein, at 128,822 to 129,409
_0130
Synpcc7942_0131: Synpcc7942_0131 - cyclic nucleotide-binding domain (cNMP-BD) protein, at 129,670 to 132,495
_0131
Synpcc7942_0132: Synpcc7942_0132 - hypothetical protein, at 132,721 to 133,770
_0132
Position (kb) 129
130
131
132
133 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 128.670 kb on + strand, within Synpcc7942_0129 at 128.711 kb on - strand, within Synpcc7942_0129 at 128.722 kb on - strand, within Synpcc7942_0129 at 128.750 kb on - strand, within Synpcc7942_0129 at 128.784 kb on - strand, within Synpcc7942_0129 at 128.843 kb on + strand at 128.907 kb on + strand, within Synpcc7942_0130 at 128.915 kb on - strand, within Synpcc7942_0130 at 128.920 kb on - strand, within Synpcc7942_0130 at 128.941 kb on - strand, within Synpcc7942_0130 at 128.977 kb on - strand, within Synpcc7942_0130 at 129.018 kb on - strand, within Synpcc7942_0130 at 129.031 kb on + strand, within Synpcc7942_0130 at 129.033 kb on + strand, within Synpcc7942_0130 at 129.051 kb on - strand, within Synpcc7942_0130 at 129.102 kb on + strand, within Synpcc7942_0130 at 129.122 kb on - strand, within Synpcc7942_0130 at 129.210 kb on - strand, within Synpcc7942_0130 at 129.224 kb on + strand, within Synpcc7942_0130 at 129.229 kb on + strand, within Synpcc7942_0130 at 129.231 kb on - strand, within Synpcc7942_0130 at 129.243 kb on + strand, within Synpcc7942_0130 at 129.251 kb on - strand, within Synpcc7942_0130 at 129.252 kb on + strand, within Synpcc7942_0130 at 129.323 kb on - strand, within Synpcc7942_0130 at 129.330 kb on - strand, within Synpcc7942_0130 at 129.332 kb on + strand, within Synpcc7942_0130 at 129.369 kb on - strand at 129.404 kb on + strand at 129.424 kb on - strand at 129.488 kb on - strand at 129.859 kb on - strand at 129.869 kb on - strand at 129.881 kb on - strand at 130.030 kb on + strand, within Synpcc7942_0131 at 130.070 kb on + strand, within Synpcc7942_0131 at 130.086 kb on - strand, within Synpcc7942_0131 at 130.124 kb on - strand, within Synpcc7942_0131 at 130.148 kb on + strand, within Synpcc7942_0131 at 130.148 kb on + strand, within Synpcc7942_0131 at 130.169 kb on + strand, within Synpcc7942_0131 at 130.177 kb on - strand, within Synpcc7942_0131 at 130.193 kb on + strand, within Synpcc7942_0131 at 130.193 kb on + strand, within Synpcc7942_0131 at 130.194 kb on + strand, within Synpcc7942_0131 at 130.201 kb on - strand, within Synpcc7942_0131 at 130.203 kb on - strand, within Synpcc7942_0131 at 130.233 kb on - strand, within Synpcc7942_0131 at 130.252 kb on + strand, within Synpcc7942_0131 at 130.257 kb on - strand, within Synpcc7942_0131 at 130.376 kb on - strand, within Synpcc7942_0131 at 130.376 kb on - strand, within Synpcc7942_0131 at 130.400 kb on + strand, within Synpcc7942_0131 at 130.407 kb on - strand, within Synpcc7942_0131 at 130.420 kb on + strand, within Synpcc7942_0131 at 130.493 kb on + strand, within Synpcc7942_0131 at 130.503 kb on + strand, within Synpcc7942_0131 at 130.503 kb on + strand, within Synpcc7942_0131 at 130.503 kb on + strand, within Synpcc7942_0131 at 130.503 kb on + strand, within Synpcc7942_0131 at 130.511 kb on - strand, within Synpcc7942_0131 at 130.511 kb on - strand, within Synpcc7942_0131 at 130.578 kb on - strand, within Synpcc7942_0131 at 130.580 kb on + strand, within Synpcc7942_0131 at 130.792 kb on + strand, within Synpcc7942_0131 at 130.821 kb on + strand, within Synpcc7942_0131 at 130.850 kb on + strand, within Synpcc7942_0131 at 131.038 kb on + strand, within Synpcc7942_0131 at 131.053 kb on - strand, within Synpcc7942_0131 at 131.086 kb on - strand, within Synpcc7942_0131 at 131.088 kb on + strand, within Synpcc7942_0131 at 131.090 kb on + strand, within Synpcc7942_0131 at 131.090 kb on + strand at 131.101 kb on + strand, within Synpcc7942_0131 at 131.101 kb on + strand, within Synpcc7942_0131 at 131.101 kb on + strand, within Synpcc7942_0131 at 131.101 kb on + strand, within Synpcc7942_0131 at 131.159 kb on + strand, within Synpcc7942_0131 at 131.167 kb on - strand, within Synpcc7942_0131 at 131.167 kb on - strand, within Synpcc7942_0131 at 131.167 kb on - strand, within Synpcc7942_0131 at 131.167 kb on - strand, within Synpcc7942_0131 at 131.167 kb on - strand, within Synpcc7942_0131 at 131.503 kb on + strand, within Synpcc7942_0131 at 131.833 kb on - strand, within Synpcc7942_0131 at 131.835 kb on + strand, within Synpcc7942_0131 at 131.840 kb on + strand, within Synpcc7942_0131 at 131.877 kb on - strand, within Synpcc7942_0131 at 131.878 kb on + strand, within Synpcc7942_0131 at 132.032 kb on + strand, within Synpcc7942_0131 at 132.109 kb on - strand, within Synpcc7942_0131 at 132.362 kb on + strand at 132.439 kb on - strand at 132.513 kb on + strand at 132.582 kb on - strand at 132.592 kb on + strand at 132.625 kb on - strand at 132.625 kb on - strand at 132.625 kb on - strand at 132.627 kb on + strand at 132.633 kb on + strand at 132.665 kb on + strand at 132.665 kb on + strand at 132.673 kb on - strand at 132.700 kb on - strand at 132.702 kb on + strand at 132.702 kb on + strand at 132.717 kb on + strand at 132.736 kb on - strand at 132.752 kb on - strand at 132.754 kb on - strand at 132.756 kb on + strand at 132.764 kb on - strand at 132.781 kb on + strand at 132.784 kb on + strand at 132.785 kb on + strand at 132.833 kb on - strand, within Synpcc7942_0132 at 132.835 kb on + strand, within Synpcc7942_0132 at 132.872 kb on - strand, within Synpcc7942_0132 at 132.888 kb on + strand, within Synpcc7942_0132 at 132.890 kb on + strand, within Synpcc7942_0132 at 132.903 kb on - strand, within Synpcc7942_0132 at 132.914 kb on - strand, within Synpcc7942_0132 at 132.915 kb on - strand, within Synpcc7942_0132 at 132.915 kb on - strand, within Synpcc7942_0132 at 132.916 kb on - strand, within Synpcc7942_0132 at 132.916 kb on - strand, within Synpcc7942_0132 at 132.916 kb on - strand, within Synpcc7942_0132 at 132.927 kb on + strand, within Synpcc7942_0132 at 132.935 kb on - strand, within Synpcc7942_0132 at 132.935 kb on - strand, within Synpcc7942_0132 at 132.935 kb on - strand, within Synpcc7942_0132 at 132.935 kb on - strand, within Synpcc7942_0132 at 132.949 kb on - strand at 132.956 kb on - strand, within Synpcc7942_0132 at 132.957 kb on - strand, within Synpcc7942_0132 at 132.972 kb on - strand, within Synpcc7942_0132 at 132.998 kb on + strand, within Synpcc7942_0132 at 133.006 kb on - strand, within Synpcc7942_0132 at 133.006 kb on - strand at 133.006 kb on - strand, within Synpcc7942_0132 at 133.008 kb on + strand, within Synpcc7942_0132 at 133.008 kb on + strand, within Synpcc7942_0132 at 133.016 kb on - strand, within Synpcc7942_0132 at 133.026 kb on - strand at 133.034 kb on + strand, within Synpcc7942_0132 at 133.041 kb on - strand, within Synpcc7942_0132 at 133.041 kb on - strand, within Synpcc7942_0132 at 133.048 kb on + strand, within Synpcc7942_0132 at 133.048 kb on + strand, within Synpcc7942_0132 at 133.101 kb on + strand, within Synpcc7942_0132 at 133.101 kb on + strand, within Synpcc7942_0132 at 133.109 kb on - strand, within Synpcc7942_0132 at 133.120 kb on - strand, within Synpcc7942_0132 at 133.120 kb on - strand, within Synpcc7942_0132 at 133.148 kb on + strand, within Synpcc7942_0132 at 133.148 kb on + strand, within Synpcc7942_0132 at 133.148 kb on + strand, within Synpcc7942_0132 at 133.156 kb on - strand, within Synpcc7942_0132 at 133.166 kb on - strand, within Synpcc7942_0132 at 133.166 kb on - strand, within Synpcc7942_0132 at 133.190 kb on + strand at 133.198 kb on - strand, within Synpcc7942_0132 at 133.212 kb on + strand, within Synpcc7942_0132 at 133.212 kb on - strand, within Synpcc7942_0132 at 133.228 kb on + strand, within Synpcc7942_0132 at 133.236 kb on - strand, within Synpcc7942_0132 at 133.236 kb on - strand, within Synpcc7942_0132 at 133.248 kb on + strand, within Synpcc7942_0132 at 133.257 kb on + strand, within Synpcc7942_0132 at 133.257 kb on + strand, within Synpcc7942_0132 at 133.257 kb on + strand, within Synpcc7942_0132 at 133.258 kb on + strand, within Synpcc7942_0132 at 133.266 kb on + strand, within Synpcc7942_0132 at 133.267 kb on - strand, within Synpcc7942_0132 at 133.267 kb on - strand, within Synpcc7942_0132 at 133.269 kb on - strand, within Synpcc7942_0132 at 133.269 kb on - strand, within Synpcc7942_0132 at 133.269 kb on - strand, within Synpcc7942_0132 at 133.283 kb on + strand, within Synpcc7942_0132 at 133.283 kb on + strand, within Synpcc7942_0132 at 133.291 kb on - strand, within Synpcc7942_0132 at 133.293 kb on + strand, within Synpcc7942_0132 at 133.293 kb on + strand, within Synpcc7942_0132 at 133.307 kb on + strand, within Synpcc7942_0132 at 133.308 kb on - strand, within Synpcc7942_0132 at 133.317 kb on - strand, within Synpcc7942_0132 at 133.321 kb on + strand, within Synpcc7942_0132 at 133.321 kb on + strand, within Synpcc7942_0132 at 133.329 kb on - strand, within Synpcc7942_0132 at 133.329 kb on - strand, within Synpcc7942_0132 at 133.339 kb on - strand, within Synpcc7942_0132 at 133.375 kb on - strand, within Synpcc7942_0132 at 133.381 kb on - strand, within Synpcc7942_0132 at 133.386 kb on + strand, within Synpcc7942_0132 at 133.386 kb on + strand, within Synpcc7942_0132 at 133.394 kb on - strand, within Synpcc7942_0132 at 133.394 kb on - strand, within Synpcc7942_0132 at 133.394 kb on - strand, within Synpcc7942_0132 at 133.394 kb on - strand, within Synpcc7942_0132 at 133.401 kb on - strand, within Synpcc7942_0132 at 133.435 kb on + strand, within Synpcc7942_0132 at 133.461 kb on - strand, within Synpcc7942_0132 at 133.481 kb on - strand, within Synpcc7942_0132 at 133.487 kb on + strand, within Synpcc7942_0132
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 128,670 + Synpcc7942_0129 0.52 +0.9 128,711 - Synpcc7942_0129 0.61 +0.9 128,722 - Synpcc7942_0129 0.64 +0.9 128,750 - Synpcc7942_0129 0.70 +0.9 128,784 - Synpcc7942_0129 0.78 +0.9 128,843 + +0.9 128,907 + Synpcc7942_0130 0.14 +0.9 128,915 - Synpcc7942_0130 0.16 +0.9 128,920 - Synpcc7942_0130 0.17 +0.1 128,941 - Synpcc7942_0130 0.20 -0.1 128,977 - Synpcc7942_0130 0.26 +0.9 129,018 - Synpcc7942_0130 0.33 -0.3 129,031 + Synpcc7942_0130 0.36 +1.3 129,033 + Synpcc7942_0130 0.36 -0.7 129,051 - Synpcc7942_0130 0.39 +1.8 129,102 + Synpcc7942_0130 0.48 -1.2 129,122 - Synpcc7942_0130 0.51 -0.1 129,210 - Synpcc7942_0130 0.66 +0.9 129,224 + Synpcc7942_0130 0.68 -0.8 129,229 + Synpcc7942_0130 0.69 +0.9 129,231 - Synpcc7942_0130 0.70 -1.5 129,243 + Synpcc7942_0130 0.72 -0.5 129,251 - Synpcc7942_0130 0.73 -0.3 129,252 + Synpcc7942_0130 0.73 +0.7 129,323 - Synpcc7942_0130 0.85 -0.7 129,330 - Synpcc7942_0130 0.86 +0.2 129,332 + Synpcc7942_0130 0.87 -1.0 129,369 - -0.1 129,404 + -2.1 129,424 - -0.1 129,488 - +0.1 129,859 - -0.5 129,869 - -0.4 129,881 - -1.1 130,030 + Synpcc7942_0131 0.13 -0.7 130,070 + Synpcc7942_0131 0.14 -0.1 130,086 - Synpcc7942_0131 0.15 +0.9 130,124 - Synpcc7942_0131 0.16 -0.4 130,148 + Synpcc7942_0131 0.17 -0.3 130,148 + Synpcc7942_0131 0.17 -1.2 130,169 + Synpcc7942_0131 0.18 -0.1 130,177 - Synpcc7942_0131 0.18 +0.2 130,193 + Synpcc7942_0131 0.19 -0.7 130,193 + Synpcc7942_0131 0.19 -1.2 130,194 + Synpcc7942_0131 0.19 +0.9 130,201 - Synpcc7942_0131 0.19 -0.3 130,203 - Synpcc7942_0131 0.19 -1.0 130,233 - Synpcc7942_0131 0.20 +1.3 130,252 + Synpcc7942_0131 0.21 -2.3 130,257 - Synpcc7942_0131 0.21 -0.9 130,376 - Synpcc7942_0131 0.25 -1.1 130,376 - Synpcc7942_0131 0.25 -2.1 130,400 + Synpcc7942_0131 0.26 -3.6 130,407 - Synpcc7942_0131 0.26 +1.7 130,420 + Synpcc7942_0131 0.27 +0.9 130,493 + Synpcc7942_0131 0.29 -1.2 130,503 + Synpcc7942_0131 0.29 -0.7 130,503 + Synpcc7942_0131 0.29 +0.9 130,503 + Synpcc7942_0131 0.29 +0.2 130,503 + Synpcc7942_0131 0.29 -1.0 130,511 - Synpcc7942_0131 0.30 -1.4 130,511 - Synpcc7942_0131 0.30 -1.4 130,578 - Synpcc7942_0131 0.32 -1.3 130,580 + Synpcc7942_0131 0.32 +1.9 130,792 + Synpcc7942_0131 0.40 -0.9 130,821 + Synpcc7942_0131 0.41 +0.9 130,850 + Synpcc7942_0131 0.42 +0.9 131,038 + Synpcc7942_0131 0.48 +1.2 131,053 - Synpcc7942_0131 0.49 -1.4 131,086 - Synpcc7942_0131 0.50 -1.2 131,088 + Synpcc7942_0131 0.50 +1.1 131,090 + Synpcc7942_0131 0.50 +1.9 131,090 + -0.3 131,101 + Synpcc7942_0131 0.51 +1.9 131,101 + Synpcc7942_0131 0.51 -0.8 131,101 + Synpcc7942_0131 0.51 +1.7 131,101 + Synpcc7942_0131 0.51 -1.4 131,159 + Synpcc7942_0131 0.53 +1.9 131,167 - Synpcc7942_0131 0.53 -1.5 131,167 - Synpcc7942_0131 0.53 +1.9 131,167 - Synpcc7942_0131 0.53 -1.4 131,167 - Synpcc7942_0131 0.53 -1.7 131,167 - Synpcc7942_0131 0.53 -2.4 131,503 + Synpcc7942_0131 0.65 -0.2 131,833 - Synpcc7942_0131 0.77 +1.7 131,835 + Synpcc7942_0131 0.77 -0.7 131,840 + Synpcc7942_0131 0.77 -1.5 131,877 - Synpcc7942_0131 0.78 -0.1 131,878 + Synpcc7942_0131 0.78 -1.9 132,032 + Synpcc7942_0131 0.84 +1.5 132,109 - Synpcc7942_0131 0.86 -1.3 132,362 + +0.9 132,439 - -1.9 132,513 + -1.1 132,582 - -1.4 132,592 + +1.5 132,625 - -0.1 132,625 - -0.3 132,625 - -0.5 132,627 + +1.5 132,633 + -0.3 132,665 + +0.3 132,665 + -1.0 132,673 - -2.3 132,700 - -1.1 132,702 + -1.3 132,702 + +2.1 132,717 + -1.5 132,736 - -0.7 132,752 - -2.9 132,754 - -0.1 132,756 + -0.8 132,764 - +2.5 132,781 + +1.3 132,784 + +1.9 132,785 + -2.7 132,833 - Synpcc7942_0132 0.11 -0.1 132,835 + Synpcc7942_0132 0.11 +0.9 132,872 - Synpcc7942_0132 0.14 -0.5 132,888 + Synpcc7942_0132 0.16 +0.3 132,890 + Synpcc7942_0132 0.16 +0.9 132,903 - Synpcc7942_0132 0.17 -0.4 132,914 - Synpcc7942_0132 0.18 -0.1 132,915 - Synpcc7942_0132 0.18 -1.1 132,915 - Synpcc7942_0132 0.18 -0.9 132,916 - Synpcc7942_0132 0.19 -2.4 132,916 - Synpcc7942_0132 0.19 -2.0 132,916 - Synpcc7942_0132 0.19 +1.5 132,927 + Synpcc7942_0132 0.20 -0.1 132,935 - Synpcc7942_0132 0.20 -0.1 132,935 - Synpcc7942_0132 0.20 -0.7 132,935 - Synpcc7942_0132 0.20 -0.7 132,935 - Synpcc7942_0132 0.20 +0.2 132,949 - +0.2 132,956 - Synpcc7942_0132 0.22 -0.4 132,957 - Synpcc7942_0132 0.22 +1.5 132,972 - Synpcc7942_0132 0.24 -1.5 132,998 + Synpcc7942_0132 0.26 +2.3 133,006 - Synpcc7942_0132 0.27 +0.6 133,006 - -0.1 133,006 - Synpcc7942_0132 0.27 -0.8 133,008 + Synpcc7942_0132 0.27 -0.2 133,008 + Synpcc7942_0132 0.27 -0.9 133,016 - Synpcc7942_0132 0.28 +2.8 133,026 - -0.6 133,034 + Synpcc7942_0132 0.30 -1.3 133,041 - Synpcc7942_0132 0.30 -0.7 133,041 - Synpcc7942_0132 0.30 -0.1 133,048 + Synpcc7942_0132 0.31 -0.5 133,048 + Synpcc7942_0132 0.31 -1.0 133,101 + Synpcc7942_0132 0.36 -1.3 133,101 + Synpcc7942_0132 0.36 -0.3 133,109 - Synpcc7942_0132 0.37 -0.7 133,120 - Synpcc7942_0132 0.38 -3.5 133,120 - Synpcc7942_0132 0.38 -1.5 133,148 + Synpcc7942_0132 0.41 -1.2 133,148 + Synpcc7942_0132 0.41 -1.7 133,148 + Synpcc7942_0132 0.41 -1.5 133,156 - Synpcc7942_0132 0.41 +0.9 133,166 - Synpcc7942_0132 0.42 +2.6 133,166 - Synpcc7942_0132 0.42 -2.1 133,190 + -1.7 133,198 - Synpcc7942_0132 0.45 -0.3 133,212 + Synpcc7942_0132 0.47 +1.3 133,212 - Synpcc7942_0132 0.47 -0.4 133,228 + Synpcc7942_0132 0.48 -0.9 133,236 - Synpcc7942_0132 0.49 +0.8 133,236 - Synpcc7942_0132 0.49 -0.4 133,248 + Synpcc7942_0132 0.50 -2.9 133,257 + Synpcc7942_0132 0.51 -1.4 133,257 + Synpcc7942_0132 0.51 +1.4 133,257 + Synpcc7942_0132 0.51 -1.0 133,258 + Synpcc7942_0132 0.51 -0.8 133,266 + Synpcc7942_0132 0.52 -0.1 133,267 - Synpcc7942_0132 0.52 +0.7 133,267 - Synpcc7942_0132 0.52 -1.1 133,269 - Synpcc7942_0132 0.52 -0.9 133,269 - Synpcc7942_0132 0.52 +0.3 133,269 - Synpcc7942_0132 0.52 -1.4 133,283 + Synpcc7942_0132 0.54 +0.9 133,283 + Synpcc7942_0132 0.54 +1.7 133,291 - Synpcc7942_0132 0.54 -1.1 133,293 + Synpcc7942_0132 0.54 -0.4 133,293 + Synpcc7942_0132 0.54 +0.3 133,307 + Synpcc7942_0132 0.56 +0.1 133,308 - Synpcc7942_0132 0.56 -2.8 133,317 - Synpcc7942_0132 0.57 +0.9 133,321 + Synpcc7942_0132 0.57 -2.4 133,321 + Synpcc7942_0132 0.57 +2.3 133,329 - Synpcc7942_0132 0.58 -2.5 133,329 - Synpcc7942_0132 0.58 +2.9 133,339 - Synpcc7942_0132 0.59 -1.1 133,375 - Synpcc7942_0132 0.62 -1.9 133,381 - Synpcc7942_0132 0.63 -0.1 133,386 + Synpcc7942_0132 0.63 +2.9 133,386 + Synpcc7942_0132 0.63 +2.5 133,394 - Synpcc7942_0132 0.64 -3.8 133,394 - Synpcc7942_0132 0.64 -1.3 133,394 - Synpcc7942_0132 0.64 -1.5 133,394 - Synpcc7942_0132 0.64 -0.1 133,401 - Synpcc7942_0132 0.65 +2.9 133,435 + Synpcc7942_0132 0.68 -0.7 133,461 - Synpcc7942_0132 0.70 +2.9 133,481 - Synpcc7942_0132 0.72 -1.2 133,487 + Synpcc7942_0132 0.73 -1.9
Or see this region's nucleotide sequence