Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0063 and Synpcc7942_0064 overlap by 4 nucleotides Synpcc7942_0064 and infC are separated by 116 nucleotides infC and Synpcc7942_0066 are separated by 116 nucleotides
Synpcc7942_0063: Synpcc7942_0063 - dual specificity protein phosphatase, at 64,266 to 64,706
_0063
Synpcc7942_0064: Synpcc7942_0064 - hypothetical protein, at 64,703 to 64,870
_0064
Synpcc7942_0065: infC - translation initiation factor IF-3, at 64,987 to 65,541
infC
Synpcc7942_0066: Synpcc7942_0066 - hypothetical protein, at 65,658 to 67,172
_0066
Position (kb) 64
65 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 63.286 kb on + strand at 63.563 kb on + strand at 63.563 kb on + strand at 63.571 kb on - strand at 63.600 kb on - strand at 63.623 kb on + strand at 63.626 kb on - strand at 63.626 kb on - strand at 63.631 kb on - strand at 63.631 kb on - strand at 63.667 kb on - strand at 63.748 kb on + strand at 63.748 kb on + strand at 63.750 kb on - strand at 63.756 kb on - strand at 63.774 kb on + strand at 63.782 kb on - strand at 63.814 kb on + strand at 63.819 kb on - strand at 63.821 kb on - strand at 63.842 kb on + strand at 63.873 kb on - strand at 63.892 kb on + strand at 63.908 kb on + strand at 63.916 kb on - strand at 63.922 kb on - strand at 63.969 kb on - strand at 63.969 kb on - strand at 63.971 kb on + strand at 63.976 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.979 kb on - strand at 63.981 kb on + strand at 63.986 kb on + strand at 63.989 kb on - strand at 63.991 kb on - strand at 63.994 kb on - strand at 63.994 kb on - strand at 63.994 kb on - strand at 63.994 kb on - strand at 63.996 kb on + strand at 63.996 kb on + strand at 64.004 kb on - strand at 64.004 kb on - strand at 64.010 kb on + strand at 64.018 kb on - strand at 64.025 kb on + strand at 64.038 kb on - strand at 64.079 kb on + strand at 64.085 kb on - strand at 64.087 kb on - strand at 64.106 kb on + strand at 64.160 kb on + strand at 64.168 kb on - strand at 64.168 kb on - strand at 64.171 kb on + strand at 64.179 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.196 kb on + strand at 64.196 kb on + strand at 64.244 kb on - strand at 64.244 kb on - strand at 64.253 kb on + strand at 64.261 kb on - strand at 64.261 kb on - strand at 64.263 kb on + strand at 64.272 kb on - strand at 64.291 kb on + strand at 64.296 kb on - strand at 64.359 kb on + strand, within Synpcc7942_0063 at 64.413 kb on + strand, within Synpcc7942_0063 at 64.421 kb on - strand, within Synpcc7942_0063 at 64.450 kb on + strand, within Synpcc7942_0063 at 64.452 kb on + strand, within Synpcc7942_0063 at 64.458 kb on - strand, within Synpcc7942_0063 at 64.487 kb on - strand, within Synpcc7942_0063 at 64.490 kb on + strand, within Synpcc7942_0063 at 64.501 kb on + strand, within Synpcc7942_0063 at 64.511 kb on + strand, within Synpcc7942_0063 at 64.516 kb on + strand, within Synpcc7942_0063 at 64.524 kb on - strand, within Synpcc7942_0063 at 64.524 kb on - strand, within Synpcc7942_0063 at 64.599 kb on + strand, within Synpcc7942_0063 at 64.599 kb on + strand, within Synpcc7942_0063 at 64.607 kb on - strand, within Synpcc7942_0063 at 64.607 kb on - strand, within Synpcc7942_0063 at 64.607 kb on - strand, within Synpcc7942_0063 at 64.607 kb on - strand, within Synpcc7942_0063 at 64.607 kb on - strand, within Synpcc7942_0063 at 64.609 kb on + strand, within Synpcc7942_0063 at 64.625 kb on - strand, within Synpcc7942_0063 at 64.710 kb on + strand at 64.722 kb on - strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.732 kb on - strand, within Synpcc7942_0064 at 64.732 kb on - strand, within Synpcc7942_0064 at 64.734 kb on + strand, within Synpcc7942_0064 at 64.734 kb on - strand, within Synpcc7942_0064 at 64.783 kb on - strand, within Synpcc7942_0064 at 65.691 kb on + strand at 65.700 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 63,286 + -0.1 63,563 + -3.4 63,563 + -1.1 63,571 - +0.9 63,600 - -1.1 63,623 + -1.2 63,626 - +0.9 63,626 - -1.4 63,631 - -3.7 63,631 - -1.5 63,667 - +0.9 63,748 + -2.5 63,748 + +1.9 63,750 - -0.1 63,756 - -0.9 63,774 + +1.2 63,782 - +0.9 63,814 + -0.7 63,819 - +5.3 63,821 - +0.9 63,842 + -0.6 63,873 - -0.7 63,892 + -0.1 63,908 + -0.5 63,916 - -2.2 63,922 - -0.1 63,969 - -0.9 63,969 - +0.7 63,971 + +1.2 63,976 + -0.7 63,978 + -1.1 63,978 + -1.8 63,978 + -2.1 63,979 - -0.5 63,981 + -0.4 63,986 + -0.4 63,989 - -0.1 63,991 - +1.7 63,994 - +2.7 63,994 - -1.4 63,994 - -1.9 63,994 - +0.9 63,996 + -0.1 63,996 + +0.3 64,004 - -1.1 64,004 - -2.1 64,010 + +1.3 64,018 - -0.8 64,025 + +0.6 64,038 - +0.3 64,079 + +0.3 64,085 - -0.4 64,087 - +0.9 64,106 + -0.1 64,160 + -1.6 64,168 - +2.0 64,168 - -1.2 64,171 + +1.9 64,179 - +0.9 64,193 - -0.7 64,193 - +0.2 64,193 - -0.4 64,196 + -2.2 64,196 + -0.7 64,244 - +1.9 64,244 - -2.1 64,253 + -1.1 64,261 - +0.5 64,261 - -2.3 64,263 + +0.1 64,272 - -2.4 64,291 + -1.6 64,296 - -1.7 64,359 + Synpcc7942_0063 0.21 +0.9 64,413 + Synpcc7942_0063 0.33 -2.6 64,421 - Synpcc7942_0063 0.35 -0.1 64,450 + Synpcc7942_0063 0.42 +0.9 64,452 + Synpcc7942_0063 0.42 -1.5 64,458 - Synpcc7942_0063 0.44 -1.0 64,487 - Synpcc7942_0063 0.50 -1.9 64,490 + Synpcc7942_0063 0.51 +2.5 64,501 + Synpcc7942_0063 0.53 -1.4 64,511 + Synpcc7942_0063 0.56 -1.1 64,516 + Synpcc7942_0063 0.57 -0.4 64,524 - Synpcc7942_0063 0.59 -1.1 64,524 - Synpcc7942_0063 0.59 -3.4 64,599 + Synpcc7942_0063 0.76 -0.1 64,599 + Synpcc7942_0063 0.76 +1.1 64,607 - Synpcc7942_0063 0.77 -3.9 64,607 - Synpcc7942_0063 0.77 -0.8 64,607 - Synpcc7942_0063 0.77 -2.7 64,607 - Synpcc7942_0063 0.77 -0.4 64,607 - Synpcc7942_0063 0.77 -1.9 64,609 + Synpcc7942_0063 0.78 -1.2 64,625 - Synpcc7942_0063 0.81 -0.6 64,710 + -0.9 64,722 - Synpcc7942_0064 0.11 +2.1 64,724 + Synpcc7942_0064 0.12 +2.9 64,724 + Synpcc7942_0064 0.12 -1.2 64,724 + Synpcc7942_0064 0.12 +4.9 64,724 + Synpcc7942_0064 0.12 -0.9 64,724 + Synpcc7942_0064 0.12 +0.9 64,732 - Synpcc7942_0064 0.17 -0.7 64,732 - Synpcc7942_0064 0.17 +1.3 64,734 + Synpcc7942_0064 0.18 -0.1 64,734 - Synpcc7942_0064 0.18 -0.4 64,783 - Synpcc7942_0064 0.48 +2.5 65,691 + -0.1 65,700 + -1.0
Or see this region's nucleotide sequence