Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0047

Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0046 and Synpcc7942_0047 are separated by 7 nucleotidesSynpcc7942_0047 and Synpcc7942_0048 are separated by 45 nucleotidesSynpcc7942_0048 and pilA are separated by 188 nucleotides Synpcc7942_0046: Synpcc7942_0046 - Methylase involved in ubiquinone/menaquinone biosynthesis-like, at 45,164 to 46,507 _0046 Synpcc7942_0047: Synpcc7942_0047 - TPR repeat, at 46,515 to 48,881 _0047 Synpcc7942_0048: Synpcc7942_0048 - pilin polypeptide PilA-like, at 48,927 to 49,361 _0048 Synpcc7942_0049: pilA - pilin polypeptide PilA-like, at 49,550 to 49,984 pilA Position (kb) 46 47 48 49Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 45.519 kb on - strand, within Synpcc7942_0046at 45.604 kb on + strand, within Synpcc7942_0046at 45.630 kb on + strand, within Synpcc7942_0046at 45.679 kb on - strand, within Synpcc7942_0046at 45.755 kb on + strand, within Synpcc7942_0046at 45.887 kb on + strand, within Synpcc7942_0046at 45.892 kb on + strand, within Synpcc7942_0046at 45.910 kb on - strand, within Synpcc7942_0046at 45.911 kb on - strand, within Synpcc7942_0046at 45.938 kb on - strand, within Synpcc7942_0046at 45.963 kb on - strand, within Synpcc7942_0046at 46.060 kb on - strandat 46.107 kb on + strand, within Synpcc7942_0046at 46.130 kb on - strand, within Synpcc7942_0046at 46.130 kb on - strand, within Synpcc7942_0046at 46.147 kb on - strand, within Synpcc7942_0046at 46.162 kb on - strand, within Synpcc7942_0046at 46.278 kb on - strand, within Synpcc7942_0046at 46.297 kb on + strand, within Synpcc7942_0046at 46.302 kb on + strand, within Synpcc7942_0046at 46.302 kb on + strand, within Synpcc7942_0046at 46.313 kb on + strand, within Synpcc7942_0046at 46.315 kb on + strand, within Synpcc7942_0046at 46.358 kb on + strand, within Synpcc7942_0046at 46.363 kb on + strand, within Synpcc7942_0046at 46.365 kb on + strand, within Synpcc7942_0046at 46.365 kb on + strand, within Synpcc7942_0046at 46.366 kb on - strand, within Synpcc7942_0046at 46.366 kb on - strand, within Synpcc7942_0046at 46.366 kb on - strand, within Synpcc7942_0046at 46.417 kb on + strandat 46.425 kb on - strandat 46.483 kb on + strandat 46.503 kb on + strandat 46.544 kb on + strandat 46.563 kb on + strandat 46.587 kb on - strandat 46.791 kb on + strand, within Synpcc7942_0047at 46.838 kb on + strand, within Synpcc7942_0047at 46.838 kb on + strand, within Synpcc7942_0047at 46.845 kb on - strand, within Synpcc7942_0047at 46.846 kb on - strand, within Synpcc7942_0047at 46.846 kb on - strand, within Synpcc7942_0047at 46.848 kb on + strand, within Synpcc7942_0047at 46.870 kb on + strand, within Synpcc7942_0047at 46.870 kb on + strand, within Synpcc7942_0047at 46.870 kb on + strand, within Synpcc7942_0047at 46.870 kb on + strand, within Synpcc7942_0047at 46.870 kb on + strand, within Synpcc7942_0047at 46.878 kb on - strand, within Synpcc7942_0047at 46.930 kb on + strand, within Synpcc7942_0047at 46.940 kb on + strand, within Synpcc7942_0047at 46.986 kb on + strand, within Synpcc7942_0047at 46.986 kb on + strand, within Synpcc7942_0047at 46.994 kb on - strand, within Synpcc7942_0047at 47.028 kb on - strand, within Synpcc7942_0047at 47.034 kb on + strand, within Synpcc7942_0047at 47.034 kb on + strand, within Synpcc7942_0047at 47.049 kb on + strand, within Synpcc7942_0047at 47.052 kb on - strand, within Synpcc7942_0047at 47.052 kb on - strand, within Synpcc7942_0047at 47.065 kb on + strand, within Synpcc7942_0047at 47.095 kb on + strand, within Synpcc7942_0047at 47.105 kb on + strand, within Synpcc7942_0047at 47.123 kb on + strand, within Synpcc7942_0047at 47.124 kb on + strand, within Synpcc7942_0047at 47.375 kb on - strand, within Synpcc7942_0047at 47.423 kb on + strand, within Synpcc7942_0047at 47.424 kb on + strand, within Synpcc7942_0047at 47.432 kb on - strand, within Synpcc7942_0047at 47.519 kb on + strand, within Synpcc7942_0047at 47.519 kb on + strand, within Synpcc7942_0047at 47.525 kb on + strand, within Synpcc7942_0047at 47.525 kb on + strand, within Synpcc7942_0047at 47.525 kb on + strand, within Synpcc7942_0047at 47.527 kb on - strand, within Synpcc7942_0047at 47.533 kb on - strand, within Synpcc7942_0047at 47.533 kb on - strand, within Synpcc7942_0047at 47.533 kb on - strand, within Synpcc7942_0047at 47.537 kb on + strand, within Synpcc7942_0047at 47.545 kb on - strand, within Synpcc7942_0047at 47.610 kb on + strand, within Synpcc7942_0047at 47.627 kb on + strand, within Synpcc7942_0047at 47.637 kb on + strand, within Synpcc7942_0047at 47.637 kb on + strand, within Synpcc7942_0047at 47.676 kb on + strand, within Synpcc7942_0047at 47.687 kb on + strand, within Synpcc7942_0047at 47.688 kb on + strand, within Synpcc7942_0047at 47.695 kb on - strand, within Synpcc7942_0047at 47.696 kb on - strand, within Synpcc7942_0047at 47.721 kb on + strand, within Synpcc7942_0047at 47.740 kb on - strand, within Synpcc7942_0047at 47.774 kb on + strand, within Synpcc7942_0047at 47.821 kb on + strand, within Synpcc7942_0047at 47.829 kb on - strand, within Synpcc7942_0047at 47.850 kb on - strand, within Synpcc7942_0047at 47.850 kb on - strand, within Synpcc7942_0047at 47.871 kb on - strand, within Synpcc7942_0047at 47.872 kb on - strand, within Synpcc7942_0047at 47.923 kb on - strand, within Synpcc7942_0047at 47.945 kb on - strand, within Synpcc7942_0047at 47.956 kb on + strand, within Synpcc7942_0047at 47.956 kb on + strand, within Synpcc7942_0047at 48.043 kb on - strand, within Synpcc7942_0047at 48.043 kb on - strand, within Synpcc7942_0047at 48.043 kb on - strand, within Synpcc7942_0047at 48.044 kb on - strand, within Synpcc7942_0047at 48.101 kb on + strand, within Synpcc7942_0047at 48.127 kb on + strand, within Synpcc7942_0047at 48.127 kb on + strand, within Synpcc7942_0047at 48.127 kb on + strand, within Synpcc7942_0047at 48.127 kb on + strand, within Synpcc7942_0047at 48.127 kb on + strand, within Synpcc7942_0047at 48.127 kb on + strand, within Synpcc7942_0047at 48.127 kb on + strand, within Synpcc7942_0047at 48.135 kb on - strand, within Synpcc7942_0047at 48.135 kb on - strand, within Synpcc7942_0047at 48.135 kb on - strand, within Synpcc7942_0047at 48.135 kb on - strand, within Synpcc7942_0047at 48.135 kb on - strand, within Synpcc7942_0047at 48.150 kb on + strand, within Synpcc7942_0047at 48.150 kb on + strand, within Synpcc7942_0047at 48.158 kb on - strand, within Synpcc7942_0047at 48.170 kb on + strand, within Synpcc7942_0047at 48.173 kb on - strand, within Synpcc7942_0047at 48.173 kb on - strand, within Synpcc7942_0047at 48.178 kb on - strand, within Synpcc7942_0047at 48.191 kb on + strand, within Synpcc7942_0047at 48.202 kb on + strand, within Synpcc7942_0047at 48.235 kb on + strand, within Synpcc7942_0047at 48.243 kb on - strand, within Synpcc7942_0047at 48.248 kb on - strand, within Synpcc7942_0047at 48.313 kb on + strand, within Synpcc7942_0047at 48.315 kb on - strand, within Synpcc7942_0047at 48.321 kb on - strand, within Synpcc7942_0047at 48.508 kb on - strand, within Synpcc7942_0047at 48.515 kb on - strand, within Synpcc7942_0047at 48.556 kb on + strand, within Synpcc7942_0047at 48.579 kb on + strand, within Synpcc7942_0047at 48.586 kb on + strand, within Synpcc7942_0047at 48.626 kb on + strand, within Synpcc7942_0047at 48.632 kb on - strand, within Synpcc7942_0047at 48.634 kb on - strand, within Synpcc7942_0047at 48.643 kb on + strand, within Synpcc7942_0047at 48.693 kb on - strandat 48.706 kb on - strandat 48.710 kb on - strandat 48.722 kb on + strandat 48.845 kb on + strandat 49.092 kb on - strand, within Synpcc7942_0048at 49.382 kb on - strandat 49.650 kb on + strand, within pilAat 49.680 kb on + strand, within pilAat 49.688 kb on - strand, within pilAat 49.698 kb on - strand, within pilAat 49.809 kb on + strand, within pilAat 49.822 kb on - strand, within pilA

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1
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45,519 - Synpcc7942_0046 0.26 +1.5
45,604 + Synpcc7942_0046 0.33 +1.1
45,630 + Synpcc7942_0046 0.35 -0.1
45,679 - Synpcc7942_0046 0.38 +0.8
45,755 + Synpcc7942_0046 0.44 +1.9
45,887 + Synpcc7942_0046 0.54 +1.2
45,892 + Synpcc7942_0046 0.54 +3.7
45,910 - Synpcc7942_0046 0.56 +0.9
45,911 - Synpcc7942_0046 0.56 +0.6
45,938 - Synpcc7942_0046 0.58 +2.7
45,963 - Synpcc7942_0046 0.59 +3.0
46,060 - -2.1
46,107 + Synpcc7942_0046 0.70 -0.1
46,130 - Synpcc7942_0046 0.72 +0.6
46,130 - Synpcc7942_0046 0.72 +1.7
46,147 - Synpcc7942_0046 0.73 -2.0
46,162 - Synpcc7942_0046 0.74 -0.1
46,278 - Synpcc7942_0046 0.83 +1.1
46,297 + Synpcc7942_0046 0.84 +0.9
46,302 + Synpcc7942_0046 0.85 +2.8
46,302 + Synpcc7942_0046 0.85 +0.9
46,313 + Synpcc7942_0046 0.85 +1.9
46,315 + Synpcc7942_0046 0.86 +0.9
46,358 + Synpcc7942_0046 0.89 -2.7
46,363 + Synpcc7942_0046 0.89 +1.7
46,365 + Synpcc7942_0046 0.89 +1.9
46,365 + Synpcc7942_0046 0.89 +0.6
46,366 - Synpcc7942_0046 0.89 +2.3
46,366 - Synpcc7942_0046 0.89 +1.0
46,366 - Synpcc7942_0046 0.89 -1.8
46,417 + +2.5
46,425 - -0.1
46,483 + -0.1
46,503 + -1.0
46,544 + -2.0
46,563 + -1.1
46,587 - -2.8
46,791 + Synpcc7942_0047 0.12 +0.9
46,838 + Synpcc7942_0047 0.14 +0.9
46,838 + Synpcc7942_0047 0.14 -2.3
46,845 - Synpcc7942_0047 0.14 -0.7
46,846 - Synpcc7942_0047 0.14 -1.9
46,846 - Synpcc7942_0047 0.14 +0.9
46,848 + Synpcc7942_0047 0.14 -0.8
46,870 + Synpcc7942_0047 0.15 -1.8
46,870 + Synpcc7942_0047 0.15 -1.3
46,870 + Synpcc7942_0047 0.15 -2.4
46,870 + Synpcc7942_0047 0.15 +0.9
46,870 + Synpcc7942_0047 0.15 -1.7
46,878 - Synpcc7942_0047 0.15 -2.4
46,930 + Synpcc7942_0047 0.18 -2.8
46,940 + Synpcc7942_0047 0.18 -1.6
46,986 + Synpcc7942_0047 0.20 +0.9
46,986 + Synpcc7942_0047 0.20 -2.1
46,994 - Synpcc7942_0047 0.20 -0.1
47,028 - Synpcc7942_0047 0.22 -1.9
47,034 + Synpcc7942_0047 0.22 -2.3
47,034 + Synpcc7942_0047 0.22 +1.9
47,049 + Synpcc7942_0047 0.23 -2.4
47,052 - Synpcc7942_0047 0.23 -0.9
47,052 - Synpcc7942_0047 0.23 -1.7
47,065 + Synpcc7942_0047 0.23 -0.1
47,095 + Synpcc7942_0047 0.25 -3.5
47,105 + Synpcc7942_0047 0.25 -2.8
47,123 + Synpcc7942_0047 0.26 -2.2
47,124 + Synpcc7942_0047 0.26 -0.1
47,375 - Synpcc7942_0047 0.36 -2.3
47,423 + Synpcc7942_0047 0.38 +0.9
47,424 + Synpcc7942_0047 0.38 -1.7
47,432 - Synpcc7942_0047 0.39 -2.1
47,519 + Synpcc7942_0047 0.42 -0.4
47,519 + Synpcc7942_0047 0.42 -2.0
47,525 + Synpcc7942_0047 0.43 -0.5
47,525 + Synpcc7942_0047 0.43 -1.6
47,525 + Synpcc7942_0047 0.43 -1.4
47,527 - Synpcc7942_0047 0.43 +0.1
47,533 - Synpcc7942_0047 0.43 -0.7
47,533 - Synpcc7942_0047 0.43 -1.1
47,533 - Synpcc7942_0047 0.43 -1.3
47,537 + Synpcc7942_0047 0.43 +0.1
47,545 - Synpcc7942_0047 0.44 -1.8
47,610 + Synpcc7942_0047 0.46 -2.0
47,627 + Synpcc7942_0047 0.47 -2.2
47,637 + Synpcc7942_0047 0.47 -1.5
47,637 + Synpcc7942_0047 0.47 +0.9
47,676 + Synpcc7942_0047 0.49 -2.1
47,687 + Synpcc7942_0047 0.50 -0.7
47,688 + Synpcc7942_0047 0.50 -0.7
47,695 - Synpcc7942_0047 0.50 -1.7
47,696 - Synpcc7942_0047 0.50 -1.7
47,721 + Synpcc7942_0047 0.51 -2.2
47,740 - Synpcc7942_0047 0.52 -1.4
47,774 + Synpcc7942_0047 0.53 -0.1
47,821 + Synpcc7942_0047 0.55 -1.5
47,829 - Synpcc7942_0047 0.56 -1.3
47,850 - Synpcc7942_0047 0.56 -2.7
47,850 - Synpcc7942_0047 0.56 -2.8
47,871 - Synpcc7942_0047 0.57 -1.8
47,872 - Synpcc7942_0047 0.57 -0.5
47,923 - Synpcc7942_0047 0.59 -1.5
47,945 - Synpcc7942_0047 0.60 -1.1
47,956 + Synpcc7942_0047 0.61 -0.5
47,956 + Synpcc7942_0047 0.61 -1.3
48,043 - Synpcc7942_0047 0.65 -2.4
48,043 - Synpcc7942_0047 0.65 -2.4
48,043 - Synpcc7942_0047 0.65 -1.9
48,044 - Synpcc7942_0047 0.65 -0.3
48,101 + Synpcc7942_0047 0.67 -1.7
48,127 + Synpcc7942_0047 0.68 -2.1
48,127 + Synpcc7942_0047 0.68 -1.7
48,127 + Synpcc7942_0047 0.68 -1.9
48,127 + Synpcc7942_0047 0.68 -3.8
48,127 + Synpcc7942_0047 0.68 -2.2
48,127 + Synpcc7942_0047 0.68 -0.9
48,127 + Synpcc7942_0047 0.68 -1.7
48,135 - Synpcc7942_0047 0.68 -1.1
48,135 - Synpcc7942_0047 0.68 -2.2
48,135 - Synpcc7942_0047 0.68 -0.1
48,135 - Synpcc7942_0047 0.68 -1.1
48,135 - Synpcc7942_0047 0.68 -0.7
48,150 + Synpcc7942_0047 0.69 -0.1
48,150 + Synpcc7942_0047 0.69 -1.9
48,158 - Synpcc7942_0047 0.69 -1.2
48,170 + Synpcc7942_0047 0.70 -1.6
48,173 - Synpcc7942_0047 0.70 -1.4
48,173 - Synpcc7942_0047 0.70 -1.3
48,178 - Synpcc7942_0047 0.70 +0.9
48,191 + Synpcc7942_0047 0.71 +0.9
48,202 + Synpcc7942_0047 0.71 -1.4
48,235 + Synpcc7942_0047 0.73 -0.7
48,243 - Synpcc7942_0047 0.73 -2.0
48,248 - Synpcc7942_0047 0.73 -1.5
48,313 + Synpcc7942_0047 0.76 -1.5
48,315 - Synpcc7942_0047 0.76 -1.2
48,321 - Synpcc7942_0047 0.76 -0.0
48,508 - Synpcc7942_0047 0.84 -0.9
48,515 - Synpcc7942_0047 0.84 -0.1
48,556 + Synpcc7942_0047 0.86 -0.9
48,579 + Synpcc7942_0047 0.87 -1.0
48,586 + Synpcc7942_0047 0.87 -1.5
48,626 + Synpcc7942_0047 0.89 -0.1
48,632 - Synpcc7942_0047 0.89 -2.3
48,634 - Synpcc7942_0047 0.90 -1.2
48,643 + Synpcc7942_0047 0.90 -1.5
48,693 - -0.7
48,706 - -0.9
48,710 - +0.1
48,722 + -1.6
48,845 + -1.8
49,092 - Synpcc7942_0048 0.38 +0.9
49,382 - -2.1
49,650 + pilA Synpcc7942_0049 0.23 +0.9
49,680 + pilA Synpcc7942_0049 0.30 +0.9
49,688 - pilA Synpcc7942_0049 0.32 +2.1
49,698 - pilA Synpcc7942_0049 0.34 +1.3
49,809 + pilA Synpcc7942_0049 0.60 -0.4
49,822 - pilA Synpcc7942_0049 0.63 +3.7

Or see this region's nucleotide sequence