Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0045 and Synpcc7942_0046 are separated by 236 nucleotides Synpcc7942_0046 and Synpcc7942_0047 are separated by 7 nucleotides
Synpcc7942_0045: Synpcc7942_0045 - TPR repeat, at 43,572 to 44,927
_0045
Synpcc7942_0046: Synpcc7942_0046 - Methylase involved in ubiquinone/menaquinone biosynthesis-like, at 45,164 to 46,507
_0046
Synpcc7942_0047: Synpcc7942_0047 - TPR repeat, at 46,515 to 48,881
_0047
Position (kb) 45
46
47 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 44.176 kb on - strand, within Synpcc7942_0045 at 44.290 kb on + strand, within Synpcc7942_0045 at 44.290 kb on + strand, within Synpcc7942_0045 at 44.322 kb on + strand, within Synpcc7942_0045 at 44.322 kb on + strand, within Synpcc7942_0045 at 44.329 kb on + strand, within Synpcc7942_0045 at 44.330 kb on - strand, within Synpcc7942_0045 at 44.345 kb on + strand, within Synpcc7942_0045 at 44.454 kb on - strand, within Synpcc7942_0045 at 44.512 kb on + strand, within Synpcc7942_0045 at 44.582 kb on + strand, within Synpcc7942_0045 at 44.590 kb on - strand, within Synpcc7942_0045 at 44.641 kb on - strand, within Synpcc7942_0045 at 44.759 kb on + strand, within Synpcc7942_0045 at 44.759 kb on - strand, within Synpcc7942_0045 at 44.793 kb on + strand at 44.812 kb on - strand at 44.839 kb on - strand at 44.839 kb on - strand at 44.859 kb on - strand at 44.885 kb on + strand at 44.921 kb on + strand at 44.929 kb on - strand at 44.936 kb on - strand at 44.950 kb on + strand at 44.955 kb on + strand at 44.963 kb on - strand at 44.963 kb on - strand at 44.963 kb on - strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.026 kb on - strand at 45.026 kb on - strand at 45.026 kb on - strand at 45.027 kb on + strand at 45.027 kb on - strand at 45.035 kb on - strand at 45.047 kb on - strand at 45.088 kb on + strand at 45.111 kb on - strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.123 kb on + strand at 45.130 kb on - strand at 45.160 kb on + strand at 45.204 kb on - strand at 45.206 kb on + strand at 45.216 kb on - strand at 45.225 kb on + strand at 45.225 kb on + strand at 45.233 kb on - strand at 45.246 kb on - strand at 45.269 kb on - strand at 45.318 kb on + strand, within Synpcc7942_0046 at 45.385 kb on - strand, within Synpcc7942_0046 at 45.519 kb on - strand, within Synpcc7942_0046 at 45.604 kb on + strand, within Synpcc7942_0046 at 45.630 kb on + strand, within Synpcc7942_0046 at 45.679 kb on - strand, within Synpcc7942_0046 at 45.755 kb on + strand, within Synpcc7942_0046 at 45.887 kb on + strand, within Synpcc7942_0046 at 45.892 kb on + strand, within Synpcc7942_0046 at 45.910 kb on - strand, within Synpcc7942_0046 at 45.911 kb on - strand, within Synpcc7942_0046 at 45.938 kb on - strand, within Synpcc7942_0046 at 45.963 kb on - strand, within Synpcc7942_0046 at 46.060 kb on - strand at 46.107 kb on + strand, within Synpcc7942_0046 at 46.130 kb on - strand, within Synpcc7942_0046 at 46.130 kb on - strand, within Synpcc7942_0046 at 46.147 kb on - strand, within Synpcc7942_0046 at 46.162 kb on - strand, within Synpcc7942_0046 at 46.278 kb on - strand, within Synpcc7942_0046 at 46.297 kb on + strand, within Synpcc7942_0046 at 46.302 kb on + strand, within Synpcc7942_0046 at 46.302 kb on + strand, within Synpcc7942_0046 at 46.313 kb on + strand, within Synpcc7942_0046 at 46.315 kb on + strand, within Synpcc7942_0046 at 46.358 kb on + strand, within Synpcc7942_0046 at 46.363 kb on + strand, within Synpcc7942_0046 at 46.365 kb on + strand, within Synpcc7942_0046 at 46.365 kb on + strand, within Synpcc7942_0046 at 46.366 kb on - strand, within Synpcc7942_0046 at 46.366 kb on - strand, within Synpcc7942_0046 at 46.366 kb on - strand, within Synpcc7942_0046 at 46.417 kb on + strand at 46.425 kb on - strand at 46.483 kb on + strand at 46.503 kb on + strand at 46.544 kb on + strand at 46.563 kb on + strand at 46.587 kb on - strand at 46.791 kb on + strand, within Synpcc7942_0047 at 46.838 kb on + strand, within Synpcc7942_0047 at 46.838 kb on + strand, within Synpcc7942_0047 at 46.845 kb on - strand, within Synpcc7942_0047 at 46.846 kb on - strand, within Synpcc7942_0047 at 46.846 kb on - strand, within Synpcc7942_0047 at 46.848 kb on + strand, within Synpcc7942_0047 at 46.870 kb on + strand, within Synpcc7942_0047 at 46.870 kb on + strand, within Synpcc7942_0047 at 46.870 kb on + strand, within Synpcc7942_0047 at 46.870 kb on + strand, within Synpcc7942_0047 at 46.870 kb on + strand, within Synpcc7942_0047 at 46.878 kb on - strand, within Synpcc7942_0047 at 46.930 kb on + strand, within Synpcc7942_0047 at 46.940 kb on + strand, within Synpcc7942_0047 at 46.986 kb on + strand, within Synpcc7942_0047 at 46.986 kb on + strand, within Synpcc7942_0047 at 46.994 kb on - strand, within Synpcc7942_0047 at 47.028 kb on - strand, within Synpcc7942_0047 at 47.034 kb on + strand, within Synpcc7942_0047 at 47.034 kb on + strand, within Synpcc7942_0047 at 47.049 kb on + strand, within Synpcc7942_0047 at 47.052 kb on - strand, within Synpcc7942_0047 at 47.052 kb on - strand, within Synpcc7942_0047 at 47.065 kb on + strand, within Synpcc7942_0047 at 47.095 kb on + strand, within Synpcc7942_0047 at 47.105 kb on + strand, within Synpcc7942_0047 at 47.123 kb on + strand, within Synpcc7942_0047 at 47.124 kb on + strand, within Synpcc7942_0047 at 47.375 kb on - strand, within Synpcc7942_0047 at 47.423 kb on + strand, within Synpcc7942_0047 at 47.424 kb on + strand, within Synpcc7942_0047 at 47.432 kb on - strand, within Synpcc7942_0047
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 44,176 - Synpcc7942_0045 0.45 +0.1 44,290 + Synpcc7942_0045 0.53 +2.7 44,290 + Synpcc7942_0045 0.53 -0.1 44,322 + Synpcc7942_0045 0.55 +2.2 44,322 + Synpcc7942_0045 0.55 -0.7 44,329 + Synpcc7942_0045 0.56 +0.3 44,330 - Synpcc7942_0045 0.56 +2.7 44,345 + Synpcc7942_0045 0.57 -0.1 44,454 - Synpcc7942_0045 0.65 +0.3 44,512 + Synpcc7942_0045 0.69 -0.0 44,582 + Synpcc7942_0045 0.74 -0.0 44,590 - Synpcc7942_0045 0.75 +0.6 44,641 - Synpcc7942_0045 0.79 -0.1 44,759 + Synpcc7942_0045 0.88 +2.4 44,759 - Synpcc7942_0045 0.88 +1.7 44,793 + +1.9 44,812 - -3.6 44,839 - +0.9 44,839 - -0.0 44,859 - +0.3 44,885 + -0.7 44,921 + +1.3 44,929 - -0.1 44,936 - -1.1 44,950 + -0.7 44,955 + +0.9 44,963 - -3.7 44,963 - -1.7 44,963 - +1.9 45,018 + -3.0 45,018 + +0.3 45,018 + -1.0 45,018 + -0.4 45,018 + +0.1 45,026 - +1.9 45,026 - -0.9 45,026 - -0.7 45,027 + -0.3 45,027 - -0.6 45,035 - -1.1 45,047 - -0.1 45,088 + +0.7 45,111 - +1.9 45,113 + -1.4 45,113 + -0.3 45,113 + +1.0 45,113 + +0.9 45,113 + +2.1 45,113 + -0.1 45,121 - -0.7 45,121 - -2.2 45,121 - -0.8 45,121 - -0.7 45,123 + +0.2 45,130 - +0.3 45,160 + -1.5 45,204 - -1.4 45,206 + +4.1 45,216 - +2.8 45,225 + +3.5 45,225 + +1.3 45,233 - +0.2 45,246 - -1.8 45,269 - -0.4 45,318 + Synpcc7942_0046 0.11 +0.3 45,385 - Synpcc7942_0046 0.16 -4.0 45,519 - Synpcc7942_0046 0.26 +1.5 45,604 + Synpcc7942_0046 0.33 +1.1 45,630 + Synpcc7942_0046 0.35 -0.1 45,679 - Synpcc7942_0046 0.38 +0.8 45,755 + Synpcc7942_0046 0.44 +1.9 45,887 + Synpcc7942_0046 0.54 +1.2 45,892 + Synpcc7942_0046 0.54 +3.7 45,910 - Synpcc7942_0046 0.56 +0.9 45,911 - Synpcc7942_0046 0.56 +0.6 45,938 - Synpcc7942_0046 0.58 +2.7 45,963 - Synpcc7942_0046 0.59 +3.0 46,060 - -2.1 46,107 + Synpcc7942_0046 0.70 -0.1 46,130 - Synpcc7942_0046 0.72 +0.6 46,130 - Synpcc7942_0046 0.72 +1.7 46,147 - Synpcc7942_0046 0.73 -2.0 46,162 - Synpcc7942_0046 0.74 -0.1 46,278 - Synpcc7942_0046 0.83 +1.1 46,297 + Synpcc7942_0046 0.84 +0.9 46,302 + Synpcc7942_0046 0.85 +2.8 46,302 + Synpcc7942_0046 0.85 +0.9 46,313 + Synpcc7942_0046 0.85 +1.9 46,315 + Synpcc7942_0046 0.86 +0.9 46,358 + Synpcc7942_0046 0.89 -2.7 46,363 + Synpcc7942_0046 0.89 +1.7 46,365 + Synpcc7942_0046 0.89 +1.9 46,365 + Synpcc7942_0046 0.89 +0.6 46,366 - Synpcc7942_0046 0.89 +2.3 46,366 - Synpcc7942_0046 0.89 +1.0 46,366 - Synpcc7942_0046 0.89 -1.8 46,417 + +2.5 46,425 - -0.1 46,483 + -0.1 46,503 + -1.0 46,544 + -2.0 46,563 + -1.1 46,587 - -2.8 46,791 + Synpcc7942_0047 0.12 +0.9 46,838 + Synpcc7942_0047 0.14 +0.9 46,838 + Synpcc7942_0047 0.14 -2.3 46,845 - Synpcc7942_0047 0.14 -0.7 46,846 - Synpcc7942_0047 0.14 -1.9 46,846 - Synpcc7942_0047 0.14 +0.9 46,848 + Synpcc7942_0047 0.14 -0.8 46,870 + Synpcc7942_0047 0.15 -1.8 46,870 + Synpcc7942_0047 0.15 -1.3 46,870 + Synpcc7942_0047 0.15 -2.4 46,870 + Synpcc7942_0047 0.15 +0.9 46,870 + Synpcc7942_0047 0.15 -1.7 46,878 - Synpcc7942_0047 0.15 -2.4 46,930 + Synpcc7942_0047 0.18 -2.8 46,940 + Synpcc7942_0047 0.18 -1.6 46,986 + Synpcc7942_0047 0.20 +0.9 46,986 + Synpcc7942_0047 0.20 -2.1 46,994 - Synpcc7942_0047 0.20 -0.1 47,028 - Synpcc7942_0047 0.22 -1.9 47,034 + Synpcc7942_0047 0.22 -2.3 47,034 + Synpcc7942_0047 0.22 +1.9 47,049 + Synpcc7942_0047 0.23 -2.4 47,052 - Synpcc7942_0047 0.23 -0.9 47,052 - Synpcc7942_0047 0.23 -1.7 47,065 + Synpcc7942_0047 0.23 -0.1 47,095 + Synpcc7942_0047 0.25 -3.5 47,105 + Synpcc7942_0047 0.25 -2.8 47,123 + Synpcc7942_0047 0.26 -2.2 47,124 + Synpcc7942_0047 0.26 -0.1 47,375 - Synpcc7942_0047 0.36 -2.3 47,423 + Synpcc7942_0047 0.38 +0.9 47,424 + Synpcc7942_0047 0.38 -1.7 47,432 - Synpcc7942_0047 0.39 -2.1
Or see this region's nucleotide sequence