Experiment: Biofilm in Fresh BG11R in Flasks with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0016 and eda are separated by 25 nucleotides eda and glyS are separated by 12 nucleotides
Synpcc7942_0016: Synpcc7942_0016 - hypothetical protein, at 15,020 to 15,604
_0016
Synpcc7942_0017: eda - keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase, at 15,630 to 16,193
eda
Synpcc7942_0018: glyS - glycyl-tRNA synthetase subunit beta, at 16,206 to 18,392
glyS
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 14.658 kb on + strand at 14.666 kb on - strand at 14.676 kb on - strand at 14.703 kb on + strand at 14.703 kb on + strand at 14.711 kb on - strand at 14.729 kb on - strand at 14.769 kb on + strand at 14.769 kb on - strand at 14.774 kb on + strand at 14.779 kb on - strand at 14.801 kb on - strand at 14.801 kb on - strand at 14.801 kb on - strand at 14.822 kb on + strand at 14.822 kb on + strand at 14.822 kb on + strand at 14.822 kb on + strand at 14.822 kb on + strand at 14.822 kb on + strand at 14.830 kb on - strand at 14.830 kb on - strand at 14.830 kb on - strand at 14.832 kb on + strand at 14.840 kb on - strand at 14.840 kb on - strand at 14.886 kb on + strand at 14.894 kb on - strand at 14.901 kb on + strand at 14.926 kb on + strand at 14.934 kb on - strand at 14.941 kb on - strand at 15.023 kb on - strand at 15.167 kb on + strand, within Synpcc7942_0016 at 15.168 kb on - strand, within Synpcc7942_0016 at 15.175 kb on - strand, within Synpcc7942_0016 at 15.175 kb on - strand, within Synpcc7942_0016 at 15.232 kb on - strand, within Synpcc7942_0016 at 15.330 kb on - strand, within Synpcc7942_0016 at 15.425 kb on - strand, within Synpcc7942_0016 at 15.425 kb on - strand, within Synpcc7942_0016 at 15.552 kb on + strand at 15.562 kb on + strand at 15.698 kb on - strand, within eda at 15.779 kb on - strand, within eda at 15.859 kb on - strand, within eda at 15.917 kb on + strand, within eda at 15.983 kb on - strand, within eda at 15.987 kb on + strand, within eda at 16.067 kb on + strand, within eda at 16.067 kb on + strand, within eda at 16.075 kb on - strand, within eda at 16.177 kb on + strand at 16.195 kb on + strand at 16.203 kb on + strand at 16.203 kb on + strand at 16.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm in Fresh BG11R in Flasks with Spin rep 1 remove 14,658 + -1.6 14,666 - +0.0 14,676 - -0.7 14,703 + -2.2 14,703 + +0.6 14,711 - -1.8 14,729 - +0.9 14,769 + +2.9 14,769 - -2.9 14,774 + -0.5 14,779 - -1.3 14,801 - -0.1 14,801 - -1.3 14,801 - -0.2 14,822 + +0.8 14,822 + -0.5 14,822 + -1.5 14,822 + -1.7 14,822 + -3.3 14,822 + -1.8 14,830 - -2.2 14,830 - -1.2 14,830 - -2.2 14,832 + +3.5 14,840 - -0.1 14,840 - -0.1 14,886 + -1.0 14,894 - -2.7 14,901 + +0.2 14,926 + -1.6 14,934 - -1.5 14,941 - +1.9 15,023 - -0.9 15,167 + Synpcc7942_0016 0.25 +2.5 15,168 - Synpcc7942_0016 0.25 +2.5 15,175 - Synpcc7942_0016 0.26 -0.1 15,175 - Synpcc7942_0016 0.26 +0.7 15,232 - Synpcc7942_0016 0.36 -1.3 15,330 - Synpcc7942_0016 0.53 -0.1 15,425 - Synpcc7942_0016 0.69 -1.1 15,425 - Synpcc7942_0016 0.69 -1.1 15,552 + -1.2 15,562 + -0.8 15,698 - eda Synpcc7942_0017 0.12 -1.8 15,779 - eda Synpcc7942_0017 0.26 +0.9 15,859 - eda Synpcc7942_0017 0.41 +0.9 15,917 + eda Synpcc7942_0017 0.51 +0.9 15,983 - eda Synpcc7942_0017 0.63 +0.9 15,987 + eda Synpcc7942_0017 0.63 -0.1 16,067 + eda Synpcc7942_0017 0.77 +0.9 16,067 + eda Synpcc7942_0017 0.77 +0.9 16,075 - eda Synpcc7942_0017 0.79 +0.9 16,177 + +2.9 16,195 + +0.6 16,203 + +0.9 16,203 + -1.1 16,221 - +0.9
Or see this region's nucleotide sequence