Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13495

Experiment: diet=StandardDiet; sample=FecalPellet; mouse4; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13485 and BBR_RS13490 are separated by 5 nucleotidesBBR_RS13490 and BBR_RS13495 are separated by 33 nucleotidesBBR_RS13495 and BBR_RS13500 are separated by 173 nucleotides BBR_RS13485: BBR_RS13485 - 30S ribosomal protein S12, at 799,135 to 799,506 _RS13485 BBR_RS13490: BBR_RS13490 - 30S ribosomal protein S7, at 799,512 to 799,982 _RS13490 BBR_RS13495: BBR_RS13495 - elongation factor G, at 800,016 to 802,139 _RS13495 BBR_RS13500: BBR_RS13500 - elongation factor Tu, at 802,313 to 803,512 _RS13500 Position (kb) 800 801 802 803Strain fitness (log2 ratio) -2 -1 0 1 2at 799.805 kb on - strand, within BBR_RS13490at 802.091 kb on + strandat 802.115 kb on + strandat 802.115 kb on + strandat 802.155 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse4; day3
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799,805 - BBR_RS13490 0.62 -2.4
802,091 + -2.7
802,115 + -0.4
802,115 + +2.1
802,155 + +0.1

Or see this region's nucleotide sequence