Experiment: diet=StandardDiet; sample=FecalPellet; mouse4; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12485 and BBR_RS12490 are separated by 241 nucleotides BBR_RS12490 and BBR_RS20705 are separated by 366 nucleotides BBR_RS20705 and BBR_RS12495 are separated by 36 nucleotides
BBR_RS12485: BBR_RS12485 - ABC transporter ATP-binding protein/permease, at 549,995 to 554,056
_RS12485
BBR_RS12490: BBR_RS12490 - hypothetical protein, at 554,298 to 554,694
_RS12490
BBR_RS20705: BBR_RS20705 - hypothetical protein, at 555,061 to 555,342
_RS20705
BBR_RS12495: BBR_RS12495 - sugar ABC transporter substrate-binding protein, at 555,379 to 556,728
_RS12495
Position (kb) 554
555 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 553.313 kb on - strand, within BBR_RS12485 at 553.313 kb on - strand, within BBR_RS12485 at 553.318 kb on - strand, within BBR_RS12485 at 553.322 kb on + strand, within BBR_RS12485 at 553.354 kb on + strand, within BBR_RS12485 at 553.376 kb on - strand, within BBR_RS12485 at 553.390 kb on + strand, within BBR_RS12485 at 553.395 kb on + strand, within BBR_RS12485 at 553.395 kb on + strand, within BBR_RS12485 at 553.395 kb on + strand, within BBR_RS12485 at 553.395 kb on + strand, within BBR_RS12485 at 553.420 kb on + strand, within BBR_RS12485 at 553.425 kb on + strand, within BBR_RS12485 at 553.425 kb on + strand, within BBR_RS12485 at 553.428 kb on - strand, within BBR_RS12485 at 553.464 kb on - strand, within BBR_RS12485 at 553.466 kb on + strand, within BBR_RS12485 at 553.484 kb on - strand, within BBR_RS12485 at 553.497 kb on + strand, within BBR_RS12485 at 553.502 kb on + strand, within BBR_RS12485 at 553.555 kb on - strand, within BBR_RS12485 at 553.579 kb on + strand, within BBR_RS12485 at 553.579 kb on + strand, within BBR_RS12485 at 553.579 kb on + strand, within BBR_RS12485 at 553.587 kb on - strand, within BBR_RS12485 at 553.619 kb on + strand, within BBR_RS12485 at 553.621 kb on - strand, within BBR_RS12485 at 553.651 kb on - strand at 553.675 kb on + strand at 553.690 kb on + strand at 553.691 kb on - strand at 553.691 kb on - strand at 553.743 kb on + strand at 553.744 kb on - strand at 553.744 kb on - strand at 553.744 kb on - strand at 553.784 kb on + strand at 553.788 kb on - strand at 553.816 kb on + strand at 553.824 kb on + strand at 553.824 kb on - strand at 553.824 kb on - strand at 553.832 kb on - strand at 553.849 kb on - strand at 553.866 kb on + strand at 553.866 kb on + strand at 553.868 kb on + strand at 553.931 kb on - strand at 553.945 kb on + strand at 553.946 kb on - strand at 553.951 kb on + strand at 553.951 kb on + strand at 553.955 kb on - strand at 553.958 kb on + strand at 553.968 kb on + strand at 554.034 kb on - strand at 554.057 kb on - strand at 554.059 kb on + strand at 554.059 kb on + strand at 554.067 kb on - strand at 554.067 kb on - strand at 554.067 kb on - strand at 554.095 kb on + strand at 554.103 kb on + strand at 554.103 kb on - strand at 554.108 kb on + strand at 554.116 kb on - strand at 554.116 kb on - strand at 554.143 kb on + strand at 554.159 kb on - strand at 554.184 kb on - strand at 554.189 kb on + strand at 554.294 kb on + strand at 554.334 kb on + strand at 554.334 kb on + strand at 554.344 kb on + strand, within BBR_RS12490 at 554.344 kb on + strand, within BBR_RS12490 at 554.352 kb on - strand, within BBR_RS12490 at 554.352 kb on - strand, within BBR_RS12490 at 554.394 kb on - strand, within BBR_RS12490 at 554.396 kb on + strand, within BBR_RS12490 at 554.404 kb on - strand, within BBR_RS12490 at 554.411 kb on + strand, within BBR_RS12490 at 554.421 kb on - strand, within BBR_RS12490 at 554.435 kb on - strand, within BBR_RS12490 at 554.440 kb on - strand, within BBR_RS12490 at 554.443 kb on - strand, within BBR_RS12490 at 554.443 kb on - strand, within BBR_RS12490 at 554.501 kb on - strand, within BBR_RS12490 at 554.591 kb on - strand, within BBR_RS12490 at 554.643 kb on - strand, within BBR_RS12490 at 554.703 kb on + strand at 554.706 kb on + strand at 554.714 kb on - strand at 554.757 kb on - strand at 554.776 kb on + strand at 554.785 kb on - strand at 554.825 kb on + strand at 554.849 kb on - strand at 554.851 kb on + strand at 554.859 kb on - strand at 554.859 kb on - strand at 554.879 kb on - strand at 554.882 kb on + strand at 554.882 kb on + strand at 554.927 kb on - strand at 554.931 kb on + strand at 554.932 kb on + strand at 554.941 kb on + strand at 554.949 kb on - strand at 554.953 kb on + strand at 554.978 kb on - strand at 554.982 kb on + strand at 554.990 kb on - strand at 554.990 kb on - strand at 555.002 kb on - strand at 555.012 kb on - strand at 555.012 kb on - strand at 555.012 kb on - strand at 555.014 kb on + strand at 555.022 kb on - strand at 555.034 kb on - strand at 555.049 kb on - strand at 555.049 kb on - strand at 555.064 kb on + strand at 555.189 kb on + strand, within BBR_RS20705 at 555.189 kb on + strand, within BBR_RS20705 at 555.277 kb on - strand, within BBR_RS20705 at 555.277 kb on - strand, within BBR_RS20705 at 555.327 kb on + strand at 555.327 kb on + strand at 555.389 kb on + strand at 555.467 kb on + strand at 555.467 kb on - strand at 555.471 kb on + strand at 555.471 kb on + strand at 555.475 kb on - strand at 555.477 kb on + strand at 555.492 kb on + strand at 555.499 kb on + strand at 555.550 kb on + strand, within BBR_RS12495 at 555.570 kb on + strand, within BBR_RS12495 at 555.602 kb on - strand, within BBR_RS12495 at 555.604 kb on + strand, within BBR_RS12495 at 555.612 kb on - strand, within BBR_RS12495 at 555.625 kb on - strand, within BBR_RS12495 at 555.625 kb on - strand, within BBR_RS12495 at 555.627 kb on + strand, within BBR_RS12495 at 555.627 kb on + strand, within BBR_RS12495 at 555.627 kb on + strand, within BBR_RS12495 at 555.635 kb on - strand, within BBR_RS12495 at 555.686 kb on + strand, within BBR_RS12495
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse4; day3 remove 553,313 - BBR_RS12485 0.82 -0.6 553,313 - BBR_RS12485 0.82 +2.7 553,318 - BBR_RS12485 0.82 -2.1 553,322 + BBR_RS12485 0.82 +1.1 553,354 + BBR_RS12485 0.83 -2.2 553,376 - BBR_RS12485 0.83 +2.6 553,390 + BBR_RS12485 0.84 +0.4 553,395 + BBR_RS12485 0.84 +2.8 553,395 + BBR_RS12485 0.84 -0.3 553,395 + BBR_RS12485 0.84 -0.5 553,395 + BBR_RS12485 0.84 +1.5 553,420 + BBR_RS12485 0.84 +0.0 553,425 + BBR_RS12485 0.84 -1.9 553,425 + BBR_RS12485 0.84 +0.9 553,428 - BBR_RS12485 0.85 -0.0 553,464 - BBR_RS12485 0.85 -0.6 553,466 + BBR_RS12485 0.85 +0.7 553,484 - BBR_RS12485 0.86 -0.6 553,497 + BBR_RS12485 0.86 -3.3 553,502 + BBR_RS12485 0.86 +2.3 553,555 - BBR_RS12485 0.88 +1.4 553,579 + BBR_RS12485 0.88 -2.8 553,579 + BBR_RS12485 0.88 +2.7 553,579 + BBR_RS12485 0.88 +0.7 553,587 - BBR_RS12485 0.88 +0.5 553,619 + BBR_RS12485 0.89 +1.7 553,621 - BBR_RS12485 0.89 -2.6 553,651 - +0.6 553,675 + -1.7 553,690 + +0.2 553,691 - -0.9 553,691 - -0.0 553,743 + -1.8 553,744 - +1.2 553,744 - +0.9 553,744 - -1.8 553,784 + -1.6 553,788 - -0.9 553,816 + -1.8 553,824 + +0.5 553,824 - +1.2 553,824 - -1.9 553,832 - -2.1 553,849 - -2.1 553,866 + -2.4 553,866 + +0.4 553,868 + -0.3 553,931 - -0.5 553,945 + -0.5 553,946 - +1.8 553,951 + -0.0 553,951 + -1.6 553,955 - -0.6 553,958 + -0.2 553,968 + -0.0 554,034 - +0.5 554,057 - +0.3 554,059 + -0.9 554,059 + -2.0 554,067 - +0.4 554,067 - -0.0 554,067 - -0.7 554,095 + +0.2 554,103 + +0.9 554,103 - +1.8 554,108 + +0.4 554,116 - -0.6 554,116 - -0.7 554,143 + +0.6 554,159 - +0.6 554,184 - -1.9 554,189 + +2.2 554,294 + +0.6 554,334 + +0.9 554,334 + +0.2 554,344 + BBR_RS12490 0.12 +1.3 554,344 + BBR_RS12490 0.12 +0.5 554,352 - BBR_RS12490 0.14 +0.9 554,352 - BBR_RS12490 0.14 -1.5 554,394 - BBR_RS12490 0.24 +0.9 554,396 + BBR_RS12490 0.25 +3.5 554,404 - BBR_RS12490 0.27 +0.6 554,411 + BBR_RS12490 0.28 -1.4 554,421 - BBR_RS12490 0.31 +1.8 554,435 - BBR_RS12490 0.35 +1.0 554,440 - BBR_RS12490 0.36 -1.2 554,443 - BBR_RS12490 0.37 -0.1 554,443 - BBR_RS12490 0.37 +1.5 554,501 - BBR_RS12490 0.51 +0.4 554,591 - BBR_RS12490 0.74 +1.0 554,643 - BBR_RS12490 0.87 +1.3 554,703 + +1.2 554,706 + +0.1 554,714 - +0.3 554,757 - -1.0 554,776 + -2.2 554,785 - +0.8 554,825 + -2.1 554,849 - -2.6 554,851 + +0.7 554,859 - +2.0 554,859 - -0.1 554,879 - -2.2 554,882 + -0.5 554,882 + -2.1 554,927 - +1.3 554,931 + +1.7 554,932 + -2.1 554,941 + -0.4 554,949 - -0.9 554,953 + -1.8 554,978 - +1.4 554,982 + +0.6 554,990 - +0.1 554,990 - +2.0 555,002 - +0.6 555,012 - +0.4 555,012 - -1.1 555,012 - +0.3 555,014 + +1.6 555,022 - +1.1 555,034 - +0.7 555,049 - -0.2 555,049 - +1.2 555,064 + +0.1 555,189 + BBR_RS20705 0.45 +0.5 555,189 + BBR_RS20705 0.45 +1.7 555,277 - BBR_RS20705 0.77 +0.9 555,277 - BBR_RS20705 0.77 -0.7 555,327 + +1.5 555,327 + +3.0 555,389 + +0.7 555,467 + +2.6 555,467 - -0.6 555,471 + +1.4 555,471 + +2.3 555,475 - +1.8 555,477 + +0.2 555,492 + -1.4 555,499 + +1.1 555,550 + BBR_RS12495 0.13 -1.2 555,570 + BBR_RS12495 0.14 -0.6 555,602 - BBR_RS12495 0.17 -0.1 555,604 + BBR_RS12495 0.17 +0.6 555,612 - BBR_RS12495 0.17 -0.2 555,625 - BBR_RS12495 0.18 -1.6 555,625 - BBR_RS12495 0.18 +1.6 555,627 + BBR_RS12495 0.18 +0.5 555,627 + BBR_RS12495 0.18 -1.4 555,627 + BBR_RS12495 0.18 -0.7 555,635 - BBR_RS12495 0.19 +0.6 555,686 + BBR_RS12495 0.23 -0.9
Or see this region's nucleotide sequence