Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3069

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3068 and DVU3069 are separated by 417 nucleotidesDVU3069 and DVU3070 overlap by 4 nucleotidesDVU3070 and DVU3071 are separated by 81 nucleotides DVU3068: DVU3068 - GAF domain/sensory box/EAL domain protein (TIGR), at 3,205,678 to 3,208,161 DVU3068 DVU3069: DVU3069 - conserved hypothetical protein TIGR00247 (TIGR), at 3,208,579 to 3,209,901 DVU3069 DVU3070: DVU3070 - conserved hypothetical protein (TIGR), at 3,209,898 to 3,210,326 DVU3070 DVU3071: DVU3071 - oxidoreductase, FAD/iron-sulfur cluster-binding domain protein (TIGR), at 3,210,408 to 3,213,971 DVU3071 Position (kb) 3208 3209 3210Strain fitness (log2 ratio) -2 -1 0 1at 3207.604 kb on + strand, within DVU3068at 3207.642 kb on - strand, within DVU3068at 3207.763 kb on - strand, within DVU3068at 3207.770 kb on - strand, within DVU3068at 3207.839 kb on - strand, within DVU3068at 3207.841 kb on - strand, within DVU3068at 3207.841 kb on - strand, within DVU3068at 3207.852 kb on + strand, within DVU3068at 3207.914 kb on + strandat 3207.955 kb on - strandat 3207.955 kb on - strandat 3207.963 kb on - strandat 3207.989 kb on + strandat 3208.031 kb on + strandat 3208.091 kb on + strandat 3208.281 kb on - strandat 3208.292 kb on - strandat 3208.296 kb on + strandat 3208.327 kb on + strandat 3208.333 kb on + strandat 3208.365 kb on + strandat 3208.387 kb on - strandat 3208.409 kb on + strandat 3208.411 kb on - strandat 3208.527 kb on - strandat 3208.618 kb on - strandat 3208.646 kb on + strandat 3208.667 kb on + strandat 3208.686 kb on - strandat 3208.732 kb on + strand, within DVU3069at 3208.777 kb on - strand, within DVU3069at 3208.844 kb on + strand, within DVU3069at 3208.897 kb on - strand, within DVU3069at 3208.930 kb on + strand, within DVU3069at 3208.978 kb on + strand, within DVU3069at 3208.996 kb on - strand, within DVU3069at 3209.088 kb on - strand, within DVU3069at 3209.090 kb on + strand, within DVU3069at 3209.100 kb on + strand, within DVU3069at 3209.115 kb on + strand, within DVU3069at 3209.130 kb on - strand, within DVU3069at 3209.130 kb on - strand, within DVU3069at 3209.135 kb on - strand, within DVU3069at 3209.135 kb on - strand, within DVU3069at 3209.142 kb on + strand, within DVU3069at 3209.164 kb on + strand, within DVU3069at 3209.203 kb on + strand, within DVU3069at 3209.276 kb on + strand, within DVU3069at 3209.309 kb on - strand, within DVU3069at 3209.309 kb on - strand, within DVU3069at 3209.314 kb on + strand, within DVU3069at 3209.370 kb on + strand, within DVU3069at 3209.373 kb on - strand, within DVU3069at 3209.435 kb on - strand, within DVU3069at 3209.480 kb on + strand, within DVU3069at 3209.569 kb on - strand, within DVU3069at 3209.617 kb on + strand, within DVU3069at 3209.667 kb on + strand, within DVU3069at 3209.794 kb on + strandat 3209.841 kb on - strandat 3209.900 kb on + strandat 3210.363 kb on + strandat 3210.365 kb on + strandat 3210.370 kb on + strandat 3210.392 kb on - strandat 3210.399 kb on + strandat 3210.408 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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3,207,604 + DVU3068 0.78 +0.4
3,207,642 - DVU3068 0.79 -0.2
3,207,763 - DVU3068 0.84 -1.1
3,207,770 - DVU3068 0.84 -0.1
3,207,839 - DVU3068 0.87 +0.1
3,207,841 - DVU3068 0.87 +0.8
3,207,841 - DVU3068 0.87 -0.0
3,207,852 + DVU3068 0.88 +0.1
3,207,914 + +0.2
3,207,955 - -0.8
3,207,955 - -0.1
3,207,963 - -0.4
3,207,989 + -0.2
3,208,031 + -0.9
3,208,091 + +0.1
3,208,281 - +0.1
3,208,292 - -0.1
3,208,296 + +0.1
3,208,327 + +0.4
3,208,333 + +0.1
3,208,365 + -0.5
3,208,387 - -1.0
3,208,409 + -0.1
3,208,411 - -1.3
3,208,527 - +0.6
3,208,618 - +0.6
3,208,646 + +1.2
3,208,667 + +0.1
3,208,686 - +0.2
3,208,732 + DVU3069 0.12 +0.0
3,208,777 - DVU3069 0.15 +0.1
3,208,844 + DVU3069 0.20 +0.2
3,208,897 - DVU3069 0.24 +0.5
3,208,930 + DVU3069 0.27 -0.6
3,208,978 + DVU3069 0.30 +0.3
3,208,996 - DVU3069 0.32 -0.8
3,209,088 - DVU3069 0.38 +0.4
3,209,090 + DVU3069 0.39 +0.8
3,209,100 + DVU3069 0.39 +0.1
3,209,115 + DVU3069 0.41 +0.2
3,209,130 - DVU3069 0.42 -0.1
3,209,130 - DVU3069 0.42 -0.8
3,209,135 - DVU3069 0.42 +0.3
3,209,135 - DVU3069 0.42 +0.4
3,209,142 + DVU3069 0.43 +0.1
3,209,164 + DVU3069 0.44 +0.6
3,209,203 + DVU3069 0.47 +0.5
3,209,276 + DVU3069 0.53 +0.4
3,209,309 - DVU3069 0.55 -0.3
3,209,309 - DVU3069 0.55 +0.5
3,209,314 + DVU3069 0.56 -1.2
3,209,370 + DVU3069 0.60 -0.8
3,209,373 - DVU3069 0.60 -0.4
3,209,435 - DVU3069 0.65 +0.6
3,209,480 + DVU3069 0.68 -0.3
3,209,569 - DVU3069 0.75 +0.4
3,209,617 + DVU3069 0.78 -0.8
3,209,667 + DVU3069 0.82 +0.2
3,209,794 + +0.1
3,209,841 - +0.1
3,209,900 + +0.1
3,210,363 + +0.0
3,210,365 + -1.6
3,210,370 + +1.0
3,210,392 - -2.0
3,210,399 + +0.9
3,210,408 - -0.5

Or see this region's nucleotide sequence