Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1127

Experiment: MoLS4 with L-Arginine as nutrient 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1124 and DVU1125 overlap by 4 nucleotidesDVU1125 and DVU1126 overlap by 4 nucleotidesDVU1126 and DVU1127 overlap by 47 nucleotidesDVU1127 and DVU1128 overlap by 8 nucleotidesDVU1128 and DVU1129 overlap by 1 nucleotides DVU1124: DVU1124 - hypothetical protein (TIGR), at 1,228,740 to 1,228,982 DVU1124 DVU1125: DVU1125 - conserved domain protein (TIGR), at 1,228,979 to 1,229,452 DVU1125 DVU1126: DVU1126 - lipoprotein, putative (TIGR), at 1,229,449 to 1,229,754 DVU1126 DVU1127: DVU1127 - hypothetical protein (TIGR), at 1,229,708 to 1,230,121 DVU1127 DVU1128: DVU1128 - lysozyme, putative (TIGR), at 1,230,114 to 1,230,779 DVU1128 DVU1129: DVU1129 - conserved hypothetical protein (TIGR), at 1,230,779 to 1,231,147 DVU1129 Position (kb) 1229 1230 1231Strain fitness (log2 ratio) -2 -1 0 1 2at 1228.745 kb on - strandat 1228.772 kb on + strand, within DVU1124at 1228.793 kb on - strand, within DVU1124at 1228.822 kb on - strand, within DVU1124at 1228.846 kb on - strand, within DVU1124at 1228.859 kb on + strand, within DVU1124at 1228.883 kb on + strand, within DVU1124at 1228.896 kb on + strand, within DVU1124at 1228.918 kb on + strand, within DVU1124at 1228.918 kb on + strand, within DVU1124at 1228.943 kb on + strand, within DVU1124at 1228.955 kb on + strand, within DVU1124at 1228.955 kb on + strand, within DVU1124at 1228.955 kb on + strand, within DVU1124at 1228.955 kb on + strand, within DVU1124at 1228.955 kb on + strand, within DVU1124at 1228.962 kb on + strandat 1228.963 kb on - strandat 1228.963 kb on - strandat 1228.963 kb on - strandat 1228.963 kb on - strandat 1228.963 kb on - strandat 1229.046 kb on - strand, within DVU1125at 1229.113 kb on - strand, within DVU1125at 1229.138 kb on + strand, within DVU1125at 1229.194 kb on - strand, within DVU1125at 1229.282 kb on - strand, within DVU1125at 1229.282 kb on - strand, within DVU1125at 1229.282 kb on - strand, within DVU1125at 1229.288 kb on + strand, within DVU1125at 1229.313 kb on + strand, within DVU1125at 1229.373 kb on - strand, within DVU1125at 1229.397 kb on - strand, within DVU1125at 1229.455 kb on - strandat 1229.488 kb on + strand, within DVU1126at 1229.537 kb on + strand, within DVU1126at 1229.537 kb on + strand, within DVU1126at 1229.565 kb on + strand, within DVU1126at 1229.843 kb on + strand, within DVU1127at 1229.853 kb on - strand, within DVU1127at 1229.856 kb on - strand, within DVU1127at 1229.886 kb on - strand, within DVU1127at 1229.984 kb on - strand, within DVU1127at 1230.003 kb on - strand, within DVU1127at 1230.003 kb on - strand, within DVU1127at 1230.055 kb on + strand, within DVU1127at 1230.081 kb on - strandat 1230.100 kb on + strandat 1230.108 kb on - strandat 1230.156 kb on + strandat 1230.158 kb on - strandat 1230.227 kb on + strand, within DVU1128at 1230.377 kb on + strand, within DVU1128at 1230.459 kb on + strand, within DVU1128at 1230.460 kb on + strand, within DVU1128at 1230.508 kb on + strand, within DVU1128at 1230.508 kb on + strand, within DVU1128at 1230.516 kb on - strand, within DVU1128at 1230.545 kb on - strand, within DVU1128at 1230.626 kb on - strand, within DVU1128at 1230.652 kb on - strand, within DVU1128at 1230.779 kb on + strandat 1230.889 kb on - strand, within DVU1129at 1230.889 kb on - strand, within DVU1129at 1230.936 kb on + strand, within DVU1129at 1230.996 kb on + strand, within DVU1129at 1231.006 kb on - strand, within DVU1129at 1231.049 kb on - strand, within DVU1129at 1231.080 kb on - strand, within DVU1129

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
remove
1,228,745 - +1.2
1,228,772 + DVU1124 0.13 -0.1
1,228,793 - DVU1124 0.22 -0.3
1,228,822 - DVU1124 0.34 -0.1
1,228,846 - DVU1124 0.44 -0.3
1,228,859 + DVU1124 0.49 -0.1
1,228,883 + DVU1124 0.59 +0.7
1,228,896 + DVU1124 0.64 +1.3
1,228,918 + DVU1124 0.73 -0.6
1,228,918 + DVU1124 0.73 -0.9
1,228,943 + DVU1124 0.84 -0.1
1,228,955 + DVU1124 0.88 +0.8
1,228,955 + DVU1124 0.88 +0.2
1,228,955 + DVU1124 0.88 +0.5
1,228,955 + DVU1124 0.88 +1.9
1,228,955 + DVU1124 0.88 -1.2
1,228,962 + -0.4
1,228,963 - -1.9
1,228,963 - +0.1
1,228,963 - +2.1
1,228,963 - +0.0
1,228,963 - -1.1
1,229,046 - DVU1125 0.14 +0.0
1,229,113 - DVU1125 0.28 +0.4
1,229,138 + DVU1125 0.34 +0.7
1,229,194 - DVU1125 0.45 -1.0
1,229,282 - DVU1125 0.64 -0.1
1,229,282 - DVU1125 0.64 -1.2
1,229,282 - DVU1125 0.64 +0.2
1,229,288 + DVU1125 0.65 -0.5
1,229,313 + DVU1125 0.70 -0.8
1,229,373 - DVU1125 0.83 -0.0
1,229,397 - DVU1125 0.88 +0.2
1,229,455 - +0.1
1,229,488 + DVU1126 0.13 +1.2
1,229,537 + DVU1126 0.29 -0.2
1,229,537 + DVU1126 0.29 -1.9
1,229,565 + DVU1126 0.38 -0.3
1,229,843 + DVU1127 0.33 -0.1
1,229,853 - DVU1127 0.35 +0.1
1,229,856 - DVU1127 0.36 +0.1
1,229,886 - DVU1127 0.43 -0.2
1,229,984 - DVU1127 0.67 -0.1
1,230,003 - DVU1127 0.71 -0.8
1,230,003 - DVU1127 0.71 -0.3
1,230,055 + DVU1127 0.84 +1.8
1,230,081 - -1.0
1,230,100 + +0.2
1,230,108 - -0.2
1,230,156 + -0.4
1,230,158 - +0.5
1,230,227 + DVU1128 0.17 -0.1
1,230,377 + DVU1128 0.39 +1.2
1,230,459 + DVU1128 0.52 -1.5
1,230,460 + DVU1128 0.52 +0.2
1,230,508 + DVU1128 0.59 -0.3
1,230,508 + DVU1128 0.59 +0.9
1,230,516 - DVU1128 0.60 +0.4
1,230,545 - DVU1128 0.65 +0.2
1,230,626 - DVU1128 0.77 +0.1
1,230,652 - DVU1128 0.81 +0.1
1,230,779 + +0.2
1,230,889 - DVU1129 0.30 +1.9
1,230,889 - DVU1129 0.30 +0.2
1,230,936 + DVU1129 0.43 -0.1
1,230,996 + DVU1129 0.59 -0.4
1,231,006 - DVU1129 0.62 -0.1
1,231,049 - DVU1129 0.73 -0.4
1,231,080 - DVU1129 0.82 +0.4

Or see this region's nucleotide sequence