Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1124 and DVU1125 overlap by 4 nucleotides DVU1125 and DVU1126 overlap by 4 nucleotides DVU1126 and DVU1127 overlap by 47 nucleotides DVU1127 and DVU1128 overlap by 8 nucleotides DVU1128 and DVU1129 overlap by 1 nucleotides
DVU1124: DVU1124 - hypothetical protein (TIGR), at 1,228,740 to 1,228,982
DVU1124
DVU1125: DVU1125 - conserved domain protein (TIGR), at 1,228,979 to 1,229,452
DVU1125
DVU1126: DVU1126 - lipoprotein, putative (TIGR), at 1,229,449 to 1,229,754
DVU1126
DVU1127: DVU1127 - hypothetical protein (TIGR), at 1,229,708 to 1,230,121
DVU1127
DVU1128: DVU1128 - lysozyme, putative (TIGR), at 1,230,114 to 1,230,779
DVU1128
DVU1129: DVU1129 - conserved hypothetical protein (TIGR), at 1,230,779 to 1,231,147
DVU1129
Position (kb)
1229
1230
1231 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1228.745 kb on - strand at 1228.772 kb on + strand, within DVU1124 at 1228.793 kb on - strand, within DVU1124 at 1228.822 kb on - strand, within DVU1124 at 1228.846 kb on - strand, within DVU1124 at 1228.859 kb on + strand, within DVU1124 at 1228.883 kb on + strand, within DVU1124 at 1228.896 kb on + strand, within DVU1124 at 1228.918 kb on + strand, within DVU1124 at 1228.918 kb on + strand, within DVU1124 at 1228.943 kb on + strand, within DVU1124 at 1228.955 kb on + strand, within DVU1124 at 1228.955 kb on + strand, within DVU1124 at 1228.955 kb on + strand, within DVU1124 at 1228.955 kb on + strand, within DVU1124 at 1228.955 kb on + strand, within DVU1124 at 1228.962 kb on + strand at 1228.963 kb on - strand at 1228.963 kb on - strand at 1228.963 kb on - strand at 1228.963 kb on - strand at 1228.963 kb on - strand at 1229.046 kb on - strand, within DVU1125 at 1229.113 kb on - strand, within DVU1125 at 1229.138 kb on + strand, within DVU1125 at 1229.194 kb on - strand, within DVU1125 at 1229.282 kb on - strand, within DVU1125 at 1229.282 kb on - strand, within DVU1125 at 1229.282 kb on - strand, within DVU1125 at 1229.288 kb on + strand, within DVU1125 at 1229.313 kb on + strand, within DVU1125 at 1229.373 kb on - strand, within DVU1125 at 1229.397 kb on - strand, within DVU1125 at 1229.455 kb on - strand at 1229.488 kb on + strand, within DVU1126 at 1229.537 kb on + strand, within DVU1126 at 1229.537 kb on + strand, within DVU1126 at 1229.565 kb on + strand, within DVU1126 at 1229.843 kb on + strand, within DVU1127 at 1229.853 kb on - strand, within DVU1127 at 1229.856 kb on - strand, within DVU1127 at 1229.886 kb on - strand, within DVU1127 at 1229.984 kb on - strand, within DVU1127 at 1230.003 kb on - strand, within DVU1127 at 1230.003 kb on - strand, within DVU1127 at 1230.055 kb on + strand, within DVU1127 at 1230.081 kb on - strand at 1230.100 kb on + strand at 1230.108 kb on - strand at 1230.156 kb on + strand at 1230.158 kb on - strand at 1230.227 kb on + strand, within DVU1128 at 1230.377 kb on + strand, within DVU1128 at 1230.459 kb on + strand, within DVU1128 at 1230.460 kb on + strand, within DVU1128 at 1230.508 kb on + strand, within DVU1128 at 1230.508 kb on + strand, within DVU1128 at 1230.516 kb on - strand, within DVU1128 at 1230.545 kb on - strand, within DVU1128 at 1230.626 kb on - strand, within DVU1128 at 1230.652 kb on - strand, within DVU1128 at 1230.779 kb on + strand at 1230.889 kb on - strand, within DVU1129 at 1230.889 kb on - strand, within DVU1129 at 1230.936 kb on + strand, within DVU1129 at 1230.996 kb on + strand, within DVU1129 at 1231.006 kb on - strand, within DVU1129 at 1231.049 kb on - strand, within DVU1129 at 1231.080 kb on - strand, within DVU1129
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 1,228,745 - +1.2 1,228,772 + DVU1124 0.13 -0.1 1,228,793 - DVU1124 0.22 -0.3 1,228,822 - DVU1124 0.34 -0.1 1,228,846 - DVU1124 0.44 -0.3 1,228,859 + DVU1124 0.49 -0.1 1,228,883 + DVU1124 0.59 +0.7 1,228,896 + DVU1124 0.64 +1.3 1,228,918 + DVU1124 0.73 -0.6 1,228,918 + DVU1124 0.73 -0.9 1,228,943 + DVU1124 0.84 -0.1 1,228,955 + DVU1124 0.88 +0.8 1,228,955 + DVU1124 0.88 +0.2 1,228,955 + DVU1124 0.88 +0.5 1,228,955 + DVU1124 0.88 +1.9 1,228,955 + DVU1124 0.88 -1.2 1,228,962 + -0.4 1,228,963 - -1.9 1,228,963 - +0.1 1,228,963 - +2.1 1,228,963 - +0.0 1,228,963 - -1.1 1,229,046 - DVU1125 0.14 +0.0 1,229,113 - DVU1125 0.28 +0.4 1,229,138 + DVU1125 0.34 +0.7 1,229,194 - DVU1125 0.45 -1.0 1,229,282 - DVU1125 0.64 -0.1 1,229,282 - DVU1125 0.64 -1.2 1,229,282 - DVU1125 0.64 +0.2 1,229,288 + DVU1125 0.65 -0.5 1,229,313 + DVU1125 0.70 -0.8 1,229,373 - DVU1125 0.83 -0.0 1,229,397 - DVU1125 0.88 +0.2 1,229,455 - +0.1 1,229,488 + DVU1126 0.13 +1.2 1,229,537 + DVU1126 0.29 -0.2 1,229,537 + DVU1126 0.29 -1.9 1,229,565 + DVU1126 0.38 -0.3 1,229,843 + DVU1127 0.33 -0.1 1,229,853 - DVU1127 0.35 +0.1 1,229,856 - DVU1127 0.36 +0.1 1,229,886 - DVU1127 0.43 -0.2 1,229,984 - DVU1127 0.67 -0.1 1,230,003 - DVU1127 0.71 -0.8 1,230,003 - DVU1127 0.71 -0.3 1,230,055 + DVU1127 0.84 +1.8 1,230,081 - -1.0 1,230,100 + +0.2 1,230,108 - -0.2 1,230,156 + -0.4 1,230,158 - +0.5 1,230,227 + DVU1128 0.17 -0.1 1,230,377 + DVU1128 0.39 +1.2 1,230,459 + DVU1128 0.52 -1.5 1,230,460 + DVU1128 0.52 +0.2 1,230,508 + DVU1128 0.59 -0.3 1,230,508 + DVU1128 0.59 +0.9 1,230,516 - DVU1128 0.60 +0.4 1,230,545 - DVU1128 0.65 +0.2 1,230,626 - DVU1128 0.77 +0.1 1,230,652 - DVU1128 0.81 +0.1 1,230,779 + +0.2 1,230,889 - DVU1129 0.30 +1.9 1,230,889 - DVU1129 0.30 +0.2 1,230,936 + DVU1129 0.43 -0.1 1,230,996 + DVU1129 0.59 -0.4 1,231,006 - DVU1129 0.62 -0.1 1,231,049 - DVU1129 0.73 -0.4 1,231,080 - DVU1129 0.82 +0.4
Or see this region's nucleotide sequence