Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0249 and DVU0250 are separated by 307 nucleotides DVU0250 and DVU0251 are separated by 76 nucleotides DVU0251 and DVU0252 are separated by 335 nucleotides DVU0252 and DVU0253 are separated by 147 nucleotides
DVU0249: DVU0249 - conserved hypothetical protein (TIGR), at 283,424 to 284,395
DVU0249
DVU0250: DVU0250 - hypothetical protein (TIGR), at 284,703 to 285,290
DVU0250
DVU0251: DVU0251 - membrane protein, putative (TIGR), at 285,367 to 286,329
DVU0251
DVU0252: DVU0252 - hypothetical protein (TIGR), at 286,665 to 286,874
DVU0252
DVU0253: DVU0253 - oxidoreductase, FAD/iron-sulfur cluster-binding domain protein (TIGR), at 287,022 to 289,847
DVU0253
Position (kb) 285
286
287 Strain fitness (log2 ratio) -2
-1
0
1
2 at 284.395 kb on + strand at 284.403 kb on - strand at 284.405 kb on + strand at 284.499 kb on + strand at 284.596 kb on - strand at 284.625 kb on + strand at 284.629 kb on + strand at 284.636 kb on + strand at 284.671 kb on - strand at 284.708 kb on - strand at 284.718 kb on + strand at 284.757 kb on - strand at 284.874 kb on - strand, within DVU0250 at 284.874 kb on - strand, within DVU0250 at 284.907 kb on + strand, within DVU0250 at 284.907 kb on + strand, within DVU0250 at 284.950 kb on + strand, within DVU0250 at 284.958 kb on - strand, within DVU0250 at 285.109 kb on + strand, within DVU0250 at 285.135 kb on + strand, within DVU0250 at 285.210 kb on - strand, within DVU0250 at 285.252 kb on + strand at 285.349 kb on - strand at 285.359 kb on + strand at 285.402 kb on + strand at 285.428 kb on - strand at 285.454 kb on - strand at 285.464 kb on + strand, within DVU0251 at 285.471 kb on + strand, within DVU0251 at 285.527 kb on - strand, within DVU0251 at 285.527 kb on - strand, within DVU0251 at 285.534 kb on + strand, within DVU0251 at 285.542 kb on - strand, within DVU0251 at 285.591 kb on - strand, within DVU0251 at 285.606 kb on + strand, within DVU0251 at 285.660 kb on - strand, within DVU0251 at 285.697 kb on - strand, within DVU0251 at 285.772 kb on + strand, within DVU0251 at 285.793 kb on + strand, within DVU0251 at 285.800 kb on + strand, within DVU0251 at 285.800 kb on + strand, within DVU0251 at 285.978 kb on - strand, within DVU0251 at 286.000 kb on - strand, within DVU0251 at 286.022 kb on - strand, within DVU0251 at 286.049 kb on + strand, within DVU0251 at 286.056 kb on + strand, within DVU0251 at 286.111 kb on + strand, within DVU0251 at 286.148 kb on - strand, within DVU0251 at 286.218 kb on + strand, within DVU0251 at 286.236 kb on + strand at 286.290 kb on - strand at 286.301 kb on + strand at 286.335 kb on - strand at 286.730 kb on + strand, within DVU0252 at 286.803 kb on + strand, within DVU0252 at 286.805 kb on + strand, within DVU0252 at 286.874 kb on + strand at 286.897 kb on + strand at 286.915 kb on - strand at 286.939 kb on - strand at 286.966 kb on + strand at 286.992 kb on - strand at 287.032 kb on + strand at 287.035 kb on - strand at 287.102 kb on + strand at 287.102 kb on + strand at 287.102 kb on + strand at 287.104 kb on - strand at 287.110 kb on - strand at 287.134 kb on + strand at 287.140 kb on + strand at 287.158 kb on - strand at 287.167 kb on - strand at 287.183 kb on + strand at 287.191 kb on - strand at 287.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 284,395 + -0.7 284,403 - -1.3 284,405 + +0.0 284,499 + -0.1 284,596 - -0.2 284,625 + -0.8 284,629 + -0.2 284,636 + -0.5 284,671 - +0.1 284,708 - +0.3 284,718 + +0.7 284,757 - -0.2 284,874 - DVU0250 0.29 +0.5 284,874 - DVU0250 0.29 -0.3 284,907 + DVU0250 0.35 +0.5 284,907 + DVU0250 0.35 +0.2 284,950 + DVU0250 0.42 -0.3 284,958 - DVU0250 0.43 +0.4 285,109 + DVU0250 0.69 +1.8 285,135 + DVU0250 0.73 -0.1 285,210 - DVU0250 0.86 -0.3 285,252 + +0.2 285,349 - -1.2 285,359 + -0.3 285,402 + +0.5 285,428 - -0.0 285,454 - -0.1 285,464 + DVU0251 0.10 +0.0 285,471 + DVU0251 0.11 +0.5 285,527 - DVU0251 0.17 +0.3 285,527 - DVU0251 0.17 +0.6 285,534 + DVU0251 0.17 +0.1 285,542 - DVU0251 0.18 +0.1 285,591 - DVU0251 0.23 +1.2 285,606 + DVU0251 0.25 +0.5 285,660 - DVU0251 0.30 +0.2 285,697 - DVU0251 0.34 +0.2 285,772 + DVU0251 0.42 +0.4 285,793 + DVU0251 0.44 -0.2 285,800 + DVU0251 0.45 -0.7 285,800 + DVU0251 0.45 -0.4 285,978 - DVU0251 0.63 +0.4 286,000 - DVU0251 0.66 +2.1 286,022 - DVU0251 0.68 +0.2 286,049 + DVU0251 0.71 +1.0 286,056 + DVU0251 0.72 -1.2 286,111 + DVU0251 0.77 +0.0 286,148 - DVU0251 0.81 +1.0 286,218 + DVU0251 0.88 +0.5 286,236 + +1.4 286,290 - +0.5 286,301 + -0.1 286,335 - +0.4 286,730 + DVU0252 0.31 +0.4 286,803 + DVU0252 0.66 -0.3 286,805 + DVU0252 0.67 -1.1 286,874 + +1.4 286,897 + -1.0 286,915 - +0.0 286,939 - -0.3 286,966 + +0.4 286,992 - -0.1 287,032 + -0.1 287,035 - -0.6 287,102 + +0.7 287,102 + -0.1 287,102 + +0.1 287,104 - -1.8 287,110 - -0.0 287,134 + -0.1 287,140 + +0.8 287,158 - +0.4 287,167 - +2.0 287,183 + +0.2 287,191 - -0.1 287,257 + +0.7
Or see this region's nucleotide sequence