Experiment: Carbon source D-Glucose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3625 and Dshi_3626 overlap by 11 nucleotides Dshi_3626 and Dshi_3627 overlap by 29 nucleotides Dshi_3627 and Dshi_3628 are separated by 353 nucleotides
Dshi_3625: Dshi_3625 - hypothetical protein (RefSeq), at 26,601 to 27,164
_3625
Dshi_3626: Dshi_3626 - cation diffusion facilitator family transporter (RefSeq), at 27,154 to 28,119
_3626
Dshi_3627: Dshi_3627 - hypothetical protein (RefSeq), at 28,091 to 28,402
_3627
Dshi_3628: Dshi_3628 - hypothetical protein (RefSeq), at 28,756 to 29,451
_3628
Position (kb) 28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 28.731 kb on + strand at 28.744 kb on - strand at 28.746 kb on + strand at 28.754 kb on - strand at 28.777 kb on + strand at 28.793 kb on + strand at 28.793 kb on + strand at 28.793 kb on - strand at 28.814 kb on + strand at 28.824 kb on + strand at 28.824 kb on + strand at 28.824 kb on + strand at 28.832 kb on - strand at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.832 kb on - strand, within Dshi_3628 at 28.839 kb on + strand, within Dshi_3628 at 28.845 kb on + strand, within Dshi_3628 at 28.845 kb on + strand, within Dshi_3628 at 28.853 kb on - strand, within Dshi_3628 at 28.853 kb on - strand, within Dshi_3628 at 28.869 kb on + strand, within Dshi_3628 at 28.870 kb on + strand, within Dshi_3628 at 28.870 kb on + strand, within Dshi_3628 at 28.872 kb on + strand, within Dshi_3628 at 28.878 kb on - strand, within Dshi_3628 at 28.878 kb on - strand, within Dshi_3628 at 28.878 kb on - strand, within Dshi_3628 at 28.879 kb on - strand, within Dshi_3628 at 28.900 kb on + strand, within Dshi_3628 at 28.901 kb on - strand, within Dshi_3628 at 28.974 kb on + strand, within Dshi_3628 at 28.980 kb on + strand, within Dshi_3628 at 28.997 kb on + strand, within Dshi_3628 at 28.997 kb on + strand, within Dshi_3628 at 29.001 kb on + strand, within Dshi_3628 at 29.005 kb on - strand, within Dshi_3628 at 29.022 kb on + strand, within Dshi_3628 at 29.022 kb on + strand, within Dshi_3628 at 29.040 kb on - strand, within Dshi_3628 at 29.066 kb on + strand, within Dshi_3628 at 29.066 kb on + strand, within Dshi_3628 at 29.066 kb on + strand, within Dshi_3628 at 29.074 kb on - strand, within Dshi_3628 at 29.092 kb on + strand, within Dshi_3628 at 29.100 kb on - strand, within Dshi_3628 at 29.104 kb on + strand, within Dshi_3628 at 29.131 kb on + strand, within Dshi_3628 at 29.131 kb on + strand, within Dshi_3628 at 29.131 kb on + strand, within Dshi_3628 at 29.131 kb on + strand, within Dshi_3628 at 29.139 kb on - strand, within Dshi_3628 at 29.139 kb on - strand, within Dshi_3628 at 29.139 kb on - strand, within Dshi_3628 at 29.162 kb on + strand, within Dshi_3628 at 29.169 kb on + strand, within Dshi_3628 at 29.175 kb on - strand, within Dshi_3628 at 29.175 kb on - strand, within Dshi_3628 at 29.177 kb on - strand, within Dshi_3628 at 29.187 kb on - strand, within Dshi_3628 at 29.193 kb on + strand, within Dshi_3628 at 29.263 kb on - strand, within Dshi_3628 at 29.268 kb on - strand, within Dshi_3628 at 29.276 kb on - strand, within Dshi_3628 at 29.286 kb on - strand, within Dshi_3628 at 29.302 kb on + strand, within Dshi_3628 at 29.309 kb on + strand, within Dshi_3628 at 29.310 kb on - strand, within Dshi_3628 at 29.317 kb on - strand, within Dshi_3628 at 29.325 kb on - strand, within Dshi_3628 at 29.328 kb on + strand, within Dshi_3628 at 29.331 kb on - strand, within Dshi_3628 at 29.333 kb on - strand, within Dshi_3628 at 29.338 kb on + strand, within Dshi_3628 at 29.343 kb on - strand, within Dshi_3628 at 29.344 kb on + strand, within Dshi_3628 at 29.345 kb on + strand, within Dshi_3628 at 29.345 kb on + strand, within Dshi_3628 at 29.345 kb on + strand, within Dshi_3628 at 29.345 kb on + strand, within Dshi_3628 at 29.346 kb on - strand, within Dshi_3628 at 29.347 kb on + strand, within Dshi_3628 at 29.347 kb on + strand, within Dshi_3628 at 29.348 kb on - strand, within Dshi_3628 at 29.352 kb on + strand, within Dshi_3628 at 29.352 kb on - strand, within Dshi_3628 at 29.353 kb on - strand, within Dshi_3628 at 29.353 kb on - strand, within Dshi_3628 at 29.353 kb on - strand, within Dshi_3628 at 29.353 kb on - strand, within Dshi_3628 at 29.355 kb on - strand, within Dshi_3628 at 29.355 kb on - strand, within Dshi_3628 at 29.360 kb on - strand, within Dshi_3628 at 29.367 kb on - strand, within Dshi_3628
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM remove 28,731 + +0.3 28,744 - +0.2 28,746 + -2.0 28,754 - -0.3 28,777 + +0.8 28,793 + -0.4 28,793 + -1.0 28,793 - +0.8 28,814 + +0.1 28,824 + -0.3 28,824 + -0.0 28,824 + -0.2 28,832 - +0.2 28,832 - Dshi_3628 0.11 -1.1 28,832 - Dshi_3628 0.11 -1.5 28,832 - Dshi_3628 0.11 +0.5 28,832 - Dshi_3628 0.11 -0.2 28,832 - Dshi_3628 0.11 -0.9 28,832 - Dshi_3628 0.11 -0.9 28,832 - Dshi_3628 0.11 -0.2 28,832 - Dshi_3628 0.11 +0.6 28,832 - Dshi_3628 0.11 +0.3 28,832 - Dshi_3628 0.11 +0.3 28,839 + Dshi_3628 0.12 +2.2 28,845 + Dshi_3628 0.13 +0.1 28,845 + Dshi_3628 0.13 -1.7 28,853 - Dshi_3628 0.14 +0.1 28,853 - Dshi_3628 0.14 -0.3 28,869 + Dshi_3628 0.16 +0.3 28,870 + Dshi_3628 0.16 +0.2 28,870 + Dshi_3628 0.16 -0.2 28,872 + Dshi_3628 0.17 +0.1 28,878 - Dshi_3628 0.18 -0.8 28,878 - Dshi_3628 0.18 -1.5 28,878 - Dshi_3628 0.18 -1.1 28,879 - Dshi_3628 0.18 -0.1 28,900 + Dshi_3628 0.21 -0.7 28,901 - Dshi_3628 0.21 +1.1 28,974 + Dshi_3628 0.31 +0.4 28,980 + Dshi_3628 0.32 -0.0 28,997 + Dshi_3628 0.35 +0.3 28,997 + Dshi_3628 0.35 -0.6 29,001 + Dshi_3628 0.35 -0.4 29,005 - Dshi_3628 0.36 -0.7 29,022 + Dshi_3628 0.38 -0.5 29,022 + Dshi_3628 0.38 -1.2 29,040 - Dshi_3628 0.41 -0.4 29,066 + Dshi_3628 0.45 -1.5 29,066 + Dshi_3628 0.45 +2.0 29,066 + Dshi_3628 0.45 -3.0 29,074 - Dshi_3628 0.46 -1.4 29,092 + Dshi_3628 0.48 -0.7 29,100 - Dshi_3628 0.49 -0.7 29,104 + Dshi_3628 0.50 +2.5 29,131 + Dshi_3628 0.54 -0.3 29,131 + Dshi_3628 0.54 -0.1 29,131 + Dshi_3628 0.54 -0.3 29,131 + Dshi_3628 0.54 -0.4 29,139 - Dshi_3628 0.55 -0.2 29,139 - Dshi_3628 0.55 -1.1 29,139 - Dshi_3628 0.55 +0.2 29,162 + Dshi_3628 0.58 +0.1 29,169 + Dshi_3628 0.59 -1.6 29,175 - Dshi_3628 0.60 +0.4 29,175 - Dshi_3628 0.60 +1.7 29,177 - Dshi_3628 0.60 +1.0 29,187 - Dshi_3628 0.62 -1.0 29,193 + Dshi_3628 0.63 -0.8 29,263 - Dshi_3628 0.73 -0.0 29,268 - Dshi_3628 0.74 -2.2 29,276 - Dshi_3628 0.75 +0.2 29,286 - Dshi_3628 0.76 +0.1 29,302 + Dshi_3628 0.78 -1.7 29,309 + Dshi_3628 0.79 +0.1 29,310 - Dshi_3628 0.80 +0.5 29,317 - Dshi_3628 0.81 +1.8 29,325 - Dshi_3628 0.82 -1.9 29,328 + Dshi_3628 0.82 -1.5 29,331 - Dshi_3628 0.83 -1.4 29,333 - Dshi_3628 0.83 -0.2 29,338 + Dshi_3628 0.84 +0.6 29,343 - Dshi_3628 0.84 -0.2 29,344 + Dshi_3628 0.84 +0.4 29,345 + Dshi_3628 0.85 -0.5 29,345 + Dshi_3628 0.85 -0.5 29,345 + Dshi_3628 0.85 +0.1 29,345 + Dshi_3628 0.85 -0.9 29,346 - Dshi_3628 0.85 +2.8 29,347 + Dshi_3628 0.85 +0.4 29,347 + Dshi_3628 0.85 +0.6 29,348 - Dshi_3628 0.85 -0.1 29,352 + Dshi_3628 0.86 -2.1 29,352 - Dshi_3628 0.86 -0.3 29,353 - Dshi_3628 0.86 -1.4 29,353 - Dshi_3628 0.86 -1.1 29,353 - Dshi_3628 0.86 -0.8 29,353 - Dshi_3628 0.86 -0.5 29,355 - Dshi_3628 0.86 -1.5 29,355 - Dshi_3628 0.86 -1.3 29,360 - Dshi_3628 0.87 -0.9 29,367 - Dshi_3628 0.88 -1.6
Or see this region's nucleotide sequence