Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3505

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3503 and Dshi_3504 overlap by 4 nucleotidesDshi_3504 and Dshi_3505 overlap by 4 nucleotidesDshi_3505 and Dshi_3506 overlap by 4 nucleotidesDshi_3506 and Dshi_3507 overlap by 1 nucleotides Dshi_3503: Dshi_3503 - magnesium chelatase ATPase subunit D (RefSeq), at 3,683,499 to 3,685,220 _3503 Dshi_3504: Dshi_3504 - alpha/beta hydrolase fold (RefSeq), at 3,685,217 to 3,686,125 _3504 Dshi_3505: Dshi_3505 - transcriptional regulator, MarR family (RefSeq), at 3,686,122 to 3,686,574 _3505 Dshi_3506: Dshi_3506 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq), at 3,686,571 to 3,687,404 _3506 Dshi_3507: Dshi_3507 - glutaredoxin 3 (RefSeq), at 3,687,404 to 3,687,661 _3507 Position (kb) 3686 3687Strain fitness (log2 ratio) -3 -2 -1 0 1at 3685.158 kb on + strandat 3685.247 kb on + strandat 3685.293 kb on + strandat 3685.329 kb on - strand, within Dshi_3504at 3685.330 kb on - strand, within Dshi_3504at 3685.372 kb on + strand, within Dshi_3504at 3685.432 kb on + strand, within Dshi_3504at 3685.456 kb on + strand, within Dshi_3504at 3685.572 kb on + strand, within Dshi_3504at 3685.622 kb on - strand, within Dshi_3504at 3685.709 kb on + strand, within Dshi_3504at 3685.733 kb on + strand, within Dshi_3504at 3685.734 kb on - strand, within Dshi_3504at 3685.734 kb on - strand, within Dshi_3504at 3685.736 kb on - strand, within Dshi_3504at 3685.770 kb on + strand, within Dshi_3504at 3685.814 kb on + strand, within Dshi_3504at 3685.981 kb on + strand, within Dshi_3504at 3685.989 kb on - strand, within Dshi_3504at 3686.017 kb on - strand, within Dshi_3504at 3686.045 kb on - strandat 3686.132 kb on + strandat 3686.134 kb on - strandat 3686.140 kb on - strandat 3686.213 kb on - strand, within Dshi_3505at 3686.281 kb on - strand, within Dshi_3505at 3686.342 kb on + strand, within Dshi_3505at 3686.476 kb on + strand, within Dshi_3505at 3686.494 kb on - strand, within Dshi_3505at 3686.494 kb on - strand, within Dshi_3505at 3686.496 kb on + strand, within Dshi_3505at 3686.524 kb on + strand, within Dshi_3505at 3686.569 kb on + strandat 3686.579 kb on + strandat 3686.584 kb on + strandat 3686.584 kb on + strandat 3686.667 kb on - strand, within Dshi_3506at 3686.886 kb on - strand, within Dshi_3506at 3686.886 kb on - strand, within Dshi_3506at 3686.941 kb on - strand, within Dshi_3506at 3687.360 kb on - strandat 3687.381 kb on + strandat 3687.402 kb on + strandat 3687.478 kb on - strandat 3687.571 kb on + strand, within Dshi_3507

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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3,685,158 + -1.0
3,685,247 + +0.0
3,685,293 + +0.3
3,685,329 - Dshi_3504 0.12 -0.3
3,685,330 - Dshi_3504 0.12 +0.3
3,685,372 + Dshi_3504 0.17 -2.2
3,685,432 + Dshi_3504 0.24 -1.7
3,685,456 + Dshi_3504 0.26 +0.7
3,685,572 + Dshi_3504 0.39 -1.7
3,685,622 - Dshi_3504 0.45 +1.1
3,685,709 + Dshi_3504 0.54 +0.7
3,685,733 + Dshi_3504 0.57 +0.8
3,685,734 - Dshi_3504 0.57 -1.2
3,685,734 - Dshi_3504 0.57 -0.1
3,685,736 - Dshi_3504 0.57 +0.2
3,685,770 + Dshi_3504 0.61 +0.3
3,685,814 + Dshi_3504 0.66 -1.7
3,685,981 + Dshi_3504 0.84 -1.9
3,685,989 - Dshi_3504 0.85 +0.2
3,686,017 - Dshi_3504 0.88 +0.6
3,686,045 - -0.3
3,686,132 + -0.3
3,686,134 - -0.9
3,686,140 - -2.8
3,686,213 - Dshi_3505 0.20 +0.1
3,686,281 - Dshi_3505 0.35 +0.0
3,686,342 + Dshi_3505 0.49 -0.2
3,686,476 + Dshi_3505 0.78 -0.8
3,686,494 - Dshi_3505 0.82 +0.7
3,686,494 - Dshi_3505 0.82 -2.1
3,686,496 + Dshi_3505 0.83 -0.9
3,686,524 + Dshi_3505 0.89 -1.9
3,686,569 + -1.1
3,686,579 + +0.5
3,686,584 + +0.2
3,686,584 + +0.8
3,686,667 - Dshi_3506 0.12 -2.5
3,686,886 - Dshi_3506 0.38 -0.6
3,686,886 - Dshi_3506 0.38 -0.5
3,686,941 - Dshi_3506 0.44 -0.6
3,687,360 - -1.2
3,687,381 + -0.5
3,687,402 + -2.6
3,687,478 - -0.2
3,687,571 + Dshi_3507 0.65 -2.6

Or see this region's nucleotide sequence