Experiment: Carbon source D-Glucose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2871 and Dshi_2872 overlap by 1 nucleotides Dshi_2872 and Dshi_2873 are separated by 12 nucleotides Dshi_2873 and Dshi_2874 are separated by 3 nucleotides Dshi_2874 and Dshi_2875 are separated by 306 nucleotides Dshi_2875 and Dshi_2876 are separated by 366 nucleotides
Dshi_2871: Dshi_2871 - MaoC domain protein dehydratase (RefSeq), at 3,026,266 to 3,027,297
_2871
Dshi_2872: Dshi_2872 - hypothetical protein (RefSeq), at 3,027,297 to 3,027,500
_2872
Dshi_2873: Dshi_2873 - NnrUfamily protein (RefSeq), at 3,027,513 to 3,028,076
_2873
Dshi_2874: Dshi_2874 - Citrate (pro-3S)-lyase (RefSeq), at 3,028,080 to 3,028,967
_2874
Dshi_2875: Dshi_2875 - hypothetical protein (RefSeq), at 3,029,274 to 3,029,597
_2875
Dshi_2876: Dshi_2876 - malate dehydrogenase, NAD-dependent (RefSeq), at 3,029,964 to 3,030,926
_2876
Position (kb)
3028
3029 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3027.131 kb on + strand, within Dshi_2871 at 3027.131 kb on + strand, within Dshi_2871 at 3027.188 kb on + strand, within Dshi_2871 at 3027.211 kb on + strand at 3027.344 kb on - strand, within Dshi_2872 at 3027.401 kb on - strand, within Dshi_2872 at 3027.575 kb on - strand, within Dshi_2873 at 3027.684 kb on - strand, within Dshi_2873 at 3027.793 kb on + strand, within Dshi_2873 at 3027.793 kb on + strand, within Dshi_2873 at 3027.878 kb on - strand, within Dshi_2873 at 3027.880 kb on - strand, within Dshi_2873 at 3028.005 kb on - strand, within Dshi_2873 at 3028.077 kb on + strand at 3028.090 kb on + strand at 3028.205 kb on + strand, within Dshi_2874 at 3028.296 kb on + strand, within Dshi_2874 at 3028.430 kb on + strand, within Dshi_2874 at 3028.435 kb on + strand, within Dshi_2874 at 3028.438 kb on - strand, within Dshi_2874 at 3028.761 kb on - strand, within Dshi_2874 at 3028.777 kb on + strand, within Dshi_2874 at 3028.818 kb on - strand, within Dshi_2874 at 3028.901 kb on + strand at 3028.909 kb on - strand at 3029.082 kb on - strand at 3029.159 kb on - strand at 3029.176 kb on - strand at 3029.218 kb on - strand at 3029.259 kb on + strand at 3029.271 kb on + strand at 3029.299 kb on + strand at 3029.299 kb on + strand at 3029.317 kb on - strand, within Dshi_2875 at 3029.363 kb on - strand, within Dshi_2875 at 3029.441 kb on + strand, within Dshi_2875 at 3029.452 kb on + strand, within Dshi_2875 at 3029.467 kb on + strand, within Dshi_2875 at 3029.495 kb on + strand, within Dshi_2875 at 3029.538 kb on + strand, within Dshi_2875 at 3029.641 kb on + strand at 3029.668 kb on - strand at 3029.707 kb on + strand at 3029.716 kb on - strand at 3029.782 kb on + strand at 3029.869 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM remove 3,027,131 + Dshi_2871 0.84 -0.4 3,027,131 + Dshi_2871 0.84 +0.8 3,027,188 + Dshi_2871 0.89 +0.5 3,027,211 + +0.2 3,027,344 - Dshi_2872 0.23 +0.9 3,027,401 - Dshi_2872 0.51 +0.6 3,027,575 - Dshi_2873 0.11 -1.1 3,027,684 - Dshi_2873 0.30 -1.3 3,027,793 + Dshi_2873 0.50 -0.1 3,027,793 + Dshi_2873 0.50 -0.5 3,027,878 - Dshi_2873 0.65 -0.6 3,027,880 - Dshi_2873 0.65 +1.1 3,028,005 - Dshi_2873 0.87 -0.6 3,028,077 + -0.1 3,028,090 + -0.4 3,028,205 + Dshi_2874 0.14 -0.7 3,028,296 + Dshi_2874 0.24 -0.1 3,028,430 + Dshi_2874 0.39 +1.2 3,028,435 + Dshi_2874 0.40 +1.1 3,028,438 - Dshi_2874 0.40 +0.0 3,028,761 - Dshi_2874 0.77 -0.9 3,028,777 + Dshi_2874 0.78 +1.7 3,028,818 - Dshi_2874 0.83 -0.0 3,028,901 + +0.4 3,028,909 - -0.6 3,029,082 - -0.1 3,029,159 - +1.0 3,029,176 - -2.1 3,029,218 - +0.1 3,029,259 + -0.9 3,029,271 + -0.1 3,029,299 + +3.0 3,029,299 + -1.5 3,029,317 - Dshi_2875 0.13 -0.7 3,029,363 - Dshi_2875 0.27 +1.5 3,029,441 + Dshi_2875 0.52 +0.9 3,029,452 + Dshi_2875 0.55 -0.6 3,029,467 + Dshi_2875 0.60 -0.1 3,029,495 + Dshi_2875 0.68 -1.2 3,029,538 + Dshi_2875 0.81 +0.6 3,029,641 + -0.1 3,029,668 - -1.5 3,029,707 + -0.2 3,029,716 - +0.3 3,029,782 + -1.2 3,029,869 + -0.4
Or see this region's nucleotide sequence