Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2705

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2704 and Dshi_2705 are separated by 17 nucleotidesDshi_2705 and Dshi_2706 are separated by 173 nucleotides Dshi_2704: Dshi_2704 - porphobilinogen deaminase (RefSeq), at 2,864,136 to 2,865,179 _2704 Dshi_2705: Dshi_2705 - uroporphyrinogen decarboxylase (RefSeq), at 2,865,197 to 2,866,231 _2705 Dshi_2706: Dshi_2706 - major facilitator superfamily MFS_1 (RefSeq), at 2,866,405 to 2,867,619 _2706 Position (kb) 2865 2866 2867Strain fitness (log2 ratio) -2 -1 0 1 2at 2866.326 kb on - strandat 2866.379 kb on + strandat 2866.504 kb on + strandat 2866.590 kb on - strand, within Dshi_2706at 2866.619 kb on + strand, within Dshi_2706at 2866.681 kb on + strand, within Dshi_2706at 2866.686 kb on + strand, within Dshi_2706at 2866.717 kb on - strand, within Dshi_2706at 2866.799 kb on + strand, within Dshi_2706at 2866.823 kb on - strand, within Dshi_2706at 2866.888 kb on - strand, within Dshi_2706at 2866.989 kb on - strand, within Dshi_2706at 2867.032 kb on + strand, within Dshi_2706at 2867.032 kb on + strand, within Dshi_2706at 2867.042 kb on + strand, within Dshi_2706at 2867.050 kb on - strand, within Dshi_2706at 2867.083 kb on - strand, within Dshi_2706at 2867.185 kb on - strand, within Dshi_2706

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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2,866,326 - -0.2
2,866,379 + +0.8
2,866,504 + +2.2
2,866,590 - Dshi_2706 0.15 -0.5
2,866,619 + Dshi_2706 0.18 +1.1
2,866,681 + Dshi_2706 0.23 +1.2
2,866,686 + Dshi_2706 0.23 -2.0
2,866,717 - Dshi_2706 0.26 -0.3
2,866,799 + Dshi_2706 0.32 +0.3
2,866,823 - Dshi_2706 0.34 -1.2
2,866,888 - Dshi_2706 0.40 +0.9
2,866,989 - Dshi_2706 0.48 -0.6
2,867,032 + Dshi_2706 0.52 -0.7
2,867,032 + Dshi_2706 0.52 -1.2
2,867,042 + Dshi_2706 0.52 -0.1
2,867,050 - Dshi_2706 0.53 -0.6
2,867,083 - Dshi_2706 0.56 -1.4
2,867,185 - Dshi_2706 0.64 -0.7

Or see this region's nucleotide sequence