Experiment: Carbon source D-Glucose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2246 and Dshi_2247 are separated by 61 nucleotides Dshi_2247 and Dshi_2248 are separated by 112 nucleotides Dshi_2248 and Dshi_2249 are separated by 8 nucleotides Dshi_2249 and Dshi_2250 overlap by 4 nucleotides
Dshi_2246: Dshi_2246 - ISSpo6, transposase OrfB (RefSeq), at 2,369,013 to 2,369,543
_2246
Dshi_2247: Dshi_2247 - ISSpo6, transposase orf A (RefSeq), at 2,369,605 to 2,369,967
_2247
Dshi_2248: Dshi_2248 - putative aggregation factor core (RefSeq), at 2,370,080 to 2,370,526
_2248
Dshi_2249: Dshi_2249 - NusB antitermination factor (RefSeq), at 2,370,535 to 2,371,014
_2249
Dshi_2250: Dshi_2250 - 6,7-dimethyl-8-ribityllumazine synthase (RefSeq), at 2,371,011 to 2,371,562
_2250
Position (kb)
2370
2371 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2370.085 kb on - strand at 2370.118 kb on + strand at 2370.126 kb on - strand, within Dshi_2248 at 2370.236 kb on - strand, within Dshi_2248 at 2370.238 kb on + strand, within Dshi_2248 at 2370.246 kb on - strand, within Dshi_2248 at 2370.260 kb on - strand, within Dshi_2248 at 2370.292 kb on + strand, within Dshi_2248 at 2370.314 kb on + strand, within Dshi_2248
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM remove 2,370,085 - +0.2 2,370,118 + +1.9 2,370,126 - Dshi_2248 0.10 -1.8 2,370,236 - Dshi_2248 0.35 -2.9 2,370,238 + Dshi_2248 0.35 +0.0 2,370,246 - Dshi_2248 0.37 -1.3 2,370,260 - Dshi_2248 0.40 -1.0 2,370,292 + Dshi_2248 0.47 +0.2 2,370,314 + Dshi_2248 0.52 -0.8
Or see this region's nucleotide sequence