Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1846

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1845 and Dshi_1846 are separated by 381 nucleotidesDshi_1846 and Dshi_1847 are separated by 98 nucleotidesDshi_1847 and Dshi_1848 overlap by 26 nucleotidesDshi_1848 and Dshi_1849 overlap by 11 nucleotides Dshi_1845: Dshi_1845 - flagellar motor switch protein FliG (RefSeq), at 1,925,869 to 1,926,918 _1845 Dshi_1846: Dshi_1846 - hypothetical protein (RefSeq), at 1,927,300 to 1,927,743 _1846 Dshi_1847: Dshi_1847 - hypothetical protein (RefSeq), at 1,927,842 to 1,928,210 _1847 Dshi_1848: Dshi_1848 - putative ScnA-like protein (RefSeq), at 1,928,185 to 1,928,493 _1848 Dshi_1849: Dshi_1849 - Nitrile hydratase (RefSeq), at 1,928,483 to 1,929,094 _1849 Position (kb) 1927 1928Strain fitness (log2 ratio) -3 -2 -1 0 1at 1926.352 kb on - strand, within Dshi_1845at 1926.604 kb on - strand, within Dshi_1845at 1926.674 kb on + strand, within Dshi_1845at 1926.682 kb on - strand, within Dshi_1845at 1926.702 kb on - strand, within Dshi_1845at 1926.841 kb on + strandat 1926.920 kb on - strandat 1926.926 kb on + strandat 1926.955 kb on - strandat 1927.076 kb on - strandat 1927.254 kb on + strandat 1927.254 kb on + strandat 1927.338 kb on - strandat 1927.348 kb on - strand, within Dshi_1846at 1927.354 kb on + strand, within Dshi_1846at 1927.365 kb on + strand, within Dshi_1846at 1927.480 kb on - strand, within Dshi_1846at 1927.622 kb on - strand, within Dshi_1846at 1927.670 kb on + strand, within Dshi_1846at 1927.678 kb on - strand, within Dshi_1846at 1927.723 kb on - strandat 1927.761 kb on + strandat 1927.852 kb on + strandat 1927.921 kb on + strand, within Dshi_1847at 1927.929 kb on - strand, within Dshi_1847at 1928.238 kb on + strand, within Dshi_1848at 1928.336 kb on - strand, within Dshi_1848at 1928.348 kb on + strand, within Dshi_1848at 1928.349 kb on - strand, within Dshi_1848at 1928.409 kb on - strand, within Dshi_1848at 1928.409 kb on - strand, within Dshi_1848at 1928.431 kb on + strand, within Dshi_1848at 1928.476 kb on - strandat 1928.542 kb on - strandat 1928.542 kb on - strandat 1928.682 kb on + strand, within Dshi_1849at 1928.682 kb on + strand, within Dshi_1849

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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1,926,352 - Dshi_1845 0.46 -1.0
1,926,604 - Dshi_1845 0.70 +0.1
1,926,674 + Dshi_1845 0.77 +0.8
1,926,682 - Dshi_1845 0.77 -0.5
1,926,702 - Dshi_1845 0.79 -0.4
1,926,841 + -2.1
1,926,920 - -1.4
1,926,926 + +0.9
1,926,955 - -0.3
1,927,076 - -0.6
1,927,254 + +0.9
1,927,254 + -1.5
1,927,338 - -0.8
1,927,348 - Dshi_1846 0.11 -0.6
1,927,354 + Dshi_1846 0.12 -1.2
1,927,365 + Dshi_1846 0.15 -1.3
1,927,480 - Dshi_1846 0.41 -1.1
1,927,622 - Dshi_1846 0.73 +1.0
1,927,670 + Dshi_1846 0.83 -2.8
1,927,678 - Dshi_1846 0.85 -0.9
1,927,723 - +1.1
1,927,761 + +0.5
1,927,852 + -1.2
1,927,921 + Dshi_1847 0.21 -0.1
1,927,929 - Dshi_1847 0.24 -2.0
1,928,238 + Dshi_1848 0.17 -0.1
1,928,336 - Dshi_1848 0.49 -2.3
1,928,348 + Dshi_1848 0.53 -0.2
1,928,349 - Dshi_1848 0.53 -1.1
1,928,409 - Dshi_1848 0.72 -0.4
1,928,409 - Dshi_1848 0.72 -0.1
1,928,431 + Dshi_1848 0.80 -0.0
1,928,476 - -0.5
1,928,542 - -1.8
1,928,542 - -0.5
1,928,682 + Dshi_1849 0.33 -0.3
1,928,682 + Dshi_1849 0.33 -0.4

Or see this region's nucleotide sequence