Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1622

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1621 and Dshi_1622 are separated by 92 nucleotidesDshi_1622 and Dshi_R0029 are separated by 280 nucleotidesDshi_R0029 and Dshi_1623 are separated by 159 nucleotides Dshi_1621: Dshi_1621 - PfkB domain protein (RefSeq), at 1,685,849 to 1,686,799 _1621 Dshi_1622: Dshi_1622 - hypothetical protein (RefSeq), at 1,686,892 to 1,688,406 _1622 Dshi_R0029: Dshi_R0029 - tRNA-Arg (RefSeq), at 1,688,687 to 1,688,763 _R0029 Dshi_1623: Dshi_1623 - cysteine desulfurase, SufS subfamily (RefSeq), at 1,688,923 to 1,690,143 _1623 Position (kb) 1686 1687 1688 1689Strain fitness (log2 ratio) -3 -2 -1 0 1at 1685.984 kb on - strand, within Dshi_1621at 1686.060 kb on - strand, within Dshi_1621at 1686.069 kb on + strand, within Dshi_1621at 1686.077 kb on - strand, within Dshi_1621at 1686.077 kb on - strand, within Dshi_1621at 1686.162 kb on + strand, within Dshi_1621at 1686.222 kb on + strand, within Dshi_1621at 1686.278 kb on - strand, within Dshi_1621at 1686.306 kb on - strand, within Dshi_1621at 1686.369 kb on - strand, within Dshi_1621at 1686.408 kb on + strand, within Dshi_1621at 1686.485 kb on + strand, within Dshi_1621at 1686.587 kb on - strand, within Dshi_1621at 1686.609 kb on - strand, within Dshi_1621at 1686.609 kb on - strand, within Dshi_1621at 1686.609 kb on - strand, within Dshi_1621at 1686.653 kb on + strand, within Dshi_1621at 1686.686 kb on - strand, within Dshi_1621at 1686.703 kb on + strand, within Dshi_1621at 1686.745 kb on - strandat 1686.758 kb on + strandat 1686.819 kb on - strandat 1686.824 kb on - strandat 1686.824 kb on - strandat 1686.909 kb on - strandat 1687.100 kb on - strand, within Dshi_1622at 1687.142 kb on - strand, within Dshi_1622at 1687.158 kb on + strand, within Dshi_1622at 1687.317 kb on + strand, within Dshi_1622at 1687.379 kb on + strand, within Dshi_1622at 1687.569 kb on + strand, within Dshi_1622at 1687.710 kb on + strand, within Dshi_1622at 1687.906 kb on + strand, within Dshi_1622at 1688.042 kb on - strand, within Dshi_1622at 1688.043 kb on - strand, within Dshi_1622at 1688.048 kb on - strand, within Dshi_1622at 1688.093 kb on + strand, within Dshi_1622at 1688.093 kb on + strand, within Dshi_1622at 1688.189 kb on - strand, within Dshi_1622at 1688.343 kb on - strandat 1688.449 kb on - strandat 1688.471 kb on - strandat 1688.481 kb on + strandat 1688.499 kb on - strandat 1688.530 kb on + strandat 1688.620 kb on - strandat 1688.659 kb on - strandat 1688.815 kb on + strandat 1688.823 kb on - strandat 1688.923 kb on - strandat 1688.923 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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1,685,984 - Dshi_1621 0.14 -0.1
1,686,060 - Dshi_1621 0.22 -1.2
1,686,069 + Dshi_1621 0.23 +1.4
1,686,077 - Dshi_1621 0.24 -0.1
1,686,077 - Dshi_1621 0.24 +0.8
1,686,162 + Dshi_1621 0.33 +0.8
1,686,222 + Dshi_1621 0.39 -0.2
1,686,278 - Dshi_1621 0.45 -0.9
1,686,306 - Dshi_1621 0.48 +0.0
1,686,369 - Dshi_1621 0.55 -0.6
1,686,408 + Dshi_1621 0.59 +0.5
1,686,485 + Dshi_1621 0.67 +0.2
1,686,587 - Dshi_1621 0.78 -0.2
1,686,609 - Dshi_1621 0.80 +0.8
1,686,609 - Dshi_1621 0.80 -2.4
1,686,609 - Dshi_1621 0.80 -0.9
1,686,653 + Dshi_1621 0.85 -0.4
1,686,686 - Dshi_1621 0.88 -1.8
1,686,703 + Dshi_1621 0.90 -0.7
1,686,745 - +0.4
1,686,758 + +0.3
1,686,819 - -0.2
1,686,824 - -1.1
1,686,824 - -0.8
1,686,909 - -3.0
1,687,100 - Dshi_1622 0.14 -1.3
1,687,142 - Dshi_1622 0.17 -0.8
1,687,158 + Dshi_1622 0.18 -0.4
1,687,317 + Dshi_1622 0.28 +0.2
1,687,379 + Dshi_1622 0.32 +0.1
1,687,569 + Dshi_1622 0.45 -1.1
1,687,710 + Dshi_1622 0.54 -0.2
1,687,906 + Dshi_1622 0.67 -0.1
1,688,042 - Dshi_1622 0.76 +1.7
1,688,043 - Dshi_1622 0.76 -0.0
1,688,048 - Dshi_1622 0.76 -1.5
1,688,093 + Dshi_1622 0.79 -0.1
1,688,093 + Dshi_1622 0.79 +0.5
1,688,189 - Dshi_1622 0.86 -0.1
1,688,343 - +0.7
1,688,449 - -0.7
1,688,471 - +0.3
1,688,481 + -0.1
1,688,499 - +0.3
1,688,530 + -0.2
1,688,620 - +0.0
1,688,659 - +1.5
1,688,815 + -0.5
1,688,823 - -0.3
1,688,923 - -0.1
1,688,923 - +0.5

Or see this region's nucleotide sequence