Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1487

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1486 and Dshi_1487 are separated by 270 nucleotidesDshi_1487 and Dshi_1488 are separated by 69 nucleotides Dshi_1486: Dshi_1486 - BCCT transporter (RefSeq), at 1,542,296 to 1,544,161 _1486 Dshi_1487: Dshi_1487 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 1,544,432 to 1,546,513 _1487 Dshi_1488: Dshi_1488 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,546,583 to 1,547,743 _1488 Position (kb) 1544 1545 1546 1547Strain fitness (log2 ratio) -3 -2 -1 0 1at 1543.634 kb on + strand, within Dshi_1486at 1543.780 kb on - strand, within Dshi_1486at 1543.900 kb on + strand, within Dshi_1486at 1544.053 kb on - strandat 1544.084 kb on + strandat 1544.090 kb on + strandat 1544.183 kb on + strandat 1544.183 kb on + strandat 1544.249 kb on - strandat 1544.693 kb on - strand, within Dshi_1487at 1544.812 kb on + strand, within Dshi_1487at 1544.858 kb on - strand, within Dshi_1487at 1545.069 kb on - strand, within Dshi_1487at 1545.206 kb on - strand, within Dshi_1487at 1545.486 kb on - strand, within Dshi_1487at 1545.819 kb on + strand, within Dshi_1487at 1545.827 kb on - strand, within Dshi_1487at 1545.875 kb on - strand, within Dshi_1487at 1546.029 kb on + strand, within Dshi_1487at 1546.037 kb on - strand, within Dshi_1487at 1546.070 kb on - strand, within Dshi_1487at 1546.135 kb on - strand, within Dshi_1487at 1546.350 kb on + strandat 1546.494 kb on - strandat 1546.550 kb on - strandat 1546.636 kb on + strandat 1546.636 kb on + strandat 1546.651 kb on + strandat 1546.770 kb on + strand, within Dshi_1488at 1546.780 kb on + strand, within Dshi_1488at 1547.052 kb on - strand, within Dshi_1488at 1547.473 kb on - strand, within Dshi_1488

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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1,543,634 + Dshi_1486 0.72 +0.9
1,543,780 - Dshi_1486 0.80 -0.1
1,543,900 + Dshi_1486 0.86 +1.1
1,544,053 - -0.1
1,544,084 + -3.1
1,544,090 + +0.4
1,544,183 + -3.2
1,544,183 + +0.5
1,544,249 - +0.9
1,544,693 - Dshi_1487 0.13 -0.1
1,544,812 + Dshi_1487 0.18 -1.5
1,544,858 - Dshi_1487 0.20 -0.2
1,545,069 - Dshi_1487 0.31 -0.7
1,545,206 - Dshi_1487 0.37 -1.3
1,545,486 - Dshi_1487 0.51 -1.3
1,545,819 + Dshi_1487 0.67 -0.2
1,545,827 - Dshi_1487 0.67 -0.1
1,545,875 - Dshi_1487 0.69 +0.1
1,546,029 + Dshi_1487 0.77 +0.7
1,546,037 - Dshi_1487 0.77 -0.5
1,546,070 - Dshi_1487 0.79 -0.8
1,546,135 - Dshi_1487 0.82 +0.4
1,546,350 + -0.2
1,546,494 - -0.0
1,546,550 - +0.9
1,546,636 + -0.0
1,546,636 + -0.8
1,546,651 + +0.0
1,546,770 + Dshi_1488 0.16 -0.9
1,546,780 + Dshi_1488 0.17 -0.2
1,547,052 - Dshi_1488 0.40 +0.3
1,547,473 - Dshi_1488 0.77 +0.2

Or see this region's nucleotide sequence