Experiment: Carbon source D-Glucose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1486 and Dshi_1487 are separated by 270 nucleotides Dshi_1487 and Dshi_1488 are separated by 69 nucleotides
Dshi_1486: Dshi_1486 - BCCT transporter (RefSeq), at 1,542,296 to 1,544,161
_1486
Dshi_1487: Dshi_1487 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 1,544,432 to 1,546,513
_1487
Dshi_1488: Dshi_1488 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,546,583 to 1,547,743
_1488
Position (kb)
1544
1545
1546
1547 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1543.634 kb on + strand, within Dshi_1486 at 1543.780 kb on - strand, within Dshi_1486 at 1543.900 kb on + strand, within Dshi_1486 at 1544.053 kb on - strand at 1544.084 kb on + strand at 1544.090 kb on + strand at 1544.183 kb on + strand at 1544.183 kb on + strand at 1544.249 kb on - strand at 1544.693 kb on - strand, within Dshi_1487 at 1544.812 kb on + strand, within Dshi_1487 at 1544.858 kb on - strand, within Dshi_1487 at 1545.069 kb on - strand, within Dshi_1487 at 1545.206 kb on - strand, within Dshi_1487 at 1545.486 kb on - strand, within Dshi_1487 at 1545.819 kb on + strand, within Dshi_1487 at 1545.827 kb on - strand, within Dshi_1487 at 1545.875 kb on - strand, within Dshi_1487 at 1546.029 kb on + strand, within Dshi_1487 at 1546.037 kb on - strand, within Dshi_1487 at 1546.070 kb on - strand, within Dshi_1487 at 1546.135 kb on - strand, within Dshi_1487 at 1546.350 kb on + strand at 1546.494 kb on - strand at 1546.550 kb on - strand at 1546.636 kb on + strand at 1546.636 kb on + strand at 1546.651 kb on + strand at 1546.770 kb on + strand, within Dshi_1488 at 1546.780 kb on + strand, within Dshi_1488 at 1547.052 kb on - strand, within Dshi_1488 at 1547.473 kb on - strand, within Dshi_1488
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM remove 1,543,634 + Dshi_1486 0.72 +0.9 1,543,780 - Dshi_1486 0.80 -0.1 1,543,900 + Dshi_1486 0.86 +1.1 1,544,053 - -0.1 1,544,084 + -3.1 1,544,090 + +0.4 1,544,183 + -3.2 1,544,183 + +0.5 1,544,249 - +0.9 1,544,693 - Dshi_1487 0.13 -0.1 1,544,812 + Dshi_1487 0.18 -1.5 1,544,858 - Dshi_1487 0.20 -0.2 1,545,069 - Dshi_1487 0.31 -0.7 1,545,206 - Dshi_1487 0.37 -1.3 1,545,486 - Dshi_1487 0.51 -1.3 1,545,819 + Dshi_1487 0.67 -0.2 1,545,827 - Dshi_1487 0.67 -0.1 1,545,875 - Dshi_1487 0.69 +0.1 1,546,029 + Dshi_1487 0.77 +0.7 1,546,037 - Dshi_1487 0.77 -0.5 1,546,070 - Dshi_1487 0.79 -0.8 1,546,135 - Dshi_1487 0.82 +0.4 1,546,350 + -0.2 1,546,494 - -0.0 1,546,550 - +0.9 1,546,636 + -0.0 1,546,636 + -0.8 1,546,651 + +0.0 1,546,770 + Dshi_1488 0.16 -0.9 1,546,780 + Dshi_1488 0.17 -0.2 1,547,052 - Dshi_1488 0.40 +0.3 1,547,473 - Dshi_1488 0.77 +0.2
Or see this region's nucleotide sequence