Experiment: Carbon source D-Glucose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1261 and Dshi_1262 are separated by 6 nucleotides Dshi_1262 and Dshi_1263 are separated by 4 nucleotides
Dshi_1261: Dshi_1261 - sodium/glutamate symporter (RefSeq), at 1,308,092 to 1,309,300
_1261
Dshi_1262: Dshi_1262 - acriflavin resistance protein (RefSeq), at 1,309,307 to 1,312,360
_1262
Dshi_1263: Dshi_1263 - efflux transporter, RND family, MFP subunit (RefSeq), at 1,312,365 to 1,313,612
_1263
Position (kb)
1309
1310
1311
1312
1313 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1308.418 kb on + strand, within Dshi_1261 at 1308.666 kb on + strand, within Dshi_1261 at 1308.676 kb on - strand, within Dshi_1261 at 1308.857 kb on + strand, within Dshi_1261 at 1308.902 kb on + strand, within Dshi_1261 at 1309.018 kb on - strand, within Dshi_1261 at 1309.061 kb on - strand, within Dshi_1261 at 1309.126 kb on - strand, within Dshi_1261 at 1309.293 kb on + strand at 1309.311 kb on - strand at 1309.648 kb on - strand, within Dshi_1262 at 1309.759 kb on + strand, within Dshi_1262 at 1309.778 kb on - strand, within Dshi_1262 at 1309.784 kb on + strand, within Dshi_1262 at 1310.053 kb on - strand, within Dshi_1262 at 1310.146 kb on - strand, within Dshi_1262 at 1310.168 kb on + strand, within Dshi_1262 at 1310.176 kb on - strand, within Dshi_1262 at 1310.176 kb on - strand, within Dshi_1262 at 1310.179 kb on - strand, within Dshi_1262 at 1310.430 kb on - strand, within Dshi_1262 at 1310.487 kb on - strand, within Dshi_1262 at 1310.811 kb on - strand, within Dshi_1262 at 1310.862 kb on - strand, within Dshi_1262 at 1310.882 kb on + strand, within Dshi_1262 at 1310.905 kb on - strand, within Dshi_1262 at 1311.036 kb on + strand, within Dshi_1262 at 1311.156 kb on + strand, within Dshi_1262 at 1311.399 kb on - strand, within Dshi_1262 at 1311.585 kb on + strand, within Dshi_1262 at 1311.602 kb on + strand, within Dshi_1262 at 1311.692 kb on - strand, within Dshi_1262 at 1311.760 kb on + strand, within Dshi_1262 at 1311.763 kb on - strand, within Dshi_1262 at 1311.819 kb on + strand, within Dshi_1262 at 1311.827 kb on - strand, within Dshi_1262 at 1311.832 kb on + strand, within Dshi_1262 at 1311.976 kb on + strand, within Dshi_1262 at 1311.994 kb on + strand, within Dshi_1262 at 1312.053 kb on - strand, within Dshi_1262 at 1312.157 kb on + strand at 1312.206 kb on + strand at 1312.252 kb on - strand at 1312.331 kb on + strand at 1312.363 kb on - strand at 1312.521 kb on + strand, within Dshi_1263 at 1312.671 kb on + strand, within Dshi_1263 at 1312.755 kb on + strand, within Dshi_1263 at 1312.797 kb on - strand, within Dshi_1263 at 1312.867 kb on - strand, within Dshi_1263 at 1312.877 kb on + strand, within Dshi_1263 at 1312.913 kb on + strand, within Dshi_1263 at 1312.966 kb on - strand, within Dshi_1263 at 1312.976 kb on + strand, within Dshi_1263 at 1313.135 kb on + strand, within Dshi_1263 at 1313.205 kb on - strand, within Dshi_1263
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM remove 1,308,418 + Dshi_1261 0.27 -0.0 1,308,666 + Dshi_1261 0.47 -0.8 1,308,676 - Dshi_1261 0.48 -0.3 1,308,857 + Dshi_1261 0.63 -0.5 1,308,902 + Dshi_1261 0.67 -1.3 1,309,018 - Dshi_1261 0.77 -2.0 1,309,061 - Dshi_1261 0.80 -0.5 1,309,126 - Dshi_1261 0.86 -0.1 1,309,293 + +0.1 1,309,311 - -1.0 1,309,648 - Dshi_1262 0.11 -1.0 1,309,759 + Dshi_1262 0.15 -0.6 1,309,778 - Dshi_1262 0.15 -1.8 1,309,784 + Dshi_1262 0.16 +0.1 1,310,053 - Dshi_1262 0.24 +1.5 1,310,146 - Dshi_1262 0.27 -1.6 1,310,168 + Dshi_1262 0.28 -1.2 1,310,176 - Dshi_1262 0.28 -1.3 1,310,176 - Dshi_1262 0.28 +0.4 1,310,179 - Dshi_1262 0.29 -0.3 1,310,430 - Dshi_1262 0.37 -1.0 1,310,487 - Dshi_1262 0.39 -0.2 1,310,811 - Dshi_1262 0.49 -1.2 1,310,862 - Dshi_1262 0.51 -0.4 1,310,882 + Dshi_1262 0.52 -0.3 1,310,905 - Dshi_1262 0.52 -1.1 1,311,036 + Dshi_1262 0.57 +0.3 1,311,156 + Dshi_1262 0.61 -0.8 1,311,399 - Dshi_1262 0.69 +0.4 1,311,585 + Dshi_1262 0.75 -0.1 1,311,602 + Dshi_1262 0.75 -0.4 1,311,692 - Dshi_1262 0.78 +0.0 1,311,760 + Dshi_1262 0.80 +0.6 1,311,763 - Dshi_1262 0.80 +0.5 1,311,819 + Dshi_1262 0.82 +0.1 1,311,827 - Dshi_1262 0.83 +1.1 1,311,832 + Dshi_1262 0.83 +0.9 1,311,976 + Dshi_1262 0.87 +0.0 1,311,994 + Dshi_1262 0.88 -0.1 1,312,053 - Dshi_1262 0.90 -1.0 1,312,157 + -0.2 1,312,206 + +0.4 1,312,252 - -0.6 1,312,331 + -2.0 1,312,363 - -0.1 1,312,521 + Dshi_1263 0.12 -0.6 1,312,671 + Dshi_1263 0.25 +0.4 1,312,755 + Dshi_1263 0.31 +1.5 1,312,797 - Dshi_1263 0.35 -3.0 1,312,867 - Dshi_1263 0.40 -0.9 1,312,877 + Dshi_1263 0.41 +0.1 1,312,913 + Dshi_1263 0.44 +0.1 1,312,966 - Dshi_1263 0.48 +0.0 1,312,976 + Dshi_1263 0.49 -0.3 1,313,135 + Dshi_1263 0.62 -0.6 1,313,205 - Dshi_1263 0.67 +0.2
Or see this region's nucleotide sequence